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IDBA – A Practical Iterative de Bruijn Graph De Novo Assembler od Yu Peng, Henry C. M. Leung, Siu‐Ming Yiu, Francis Y. L. Chin

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Read mapping on de Bruijn graphs od Antoine Limasset, Bastien Cazaux, Éric Rivals, Pierre Peterlongo

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Variable-Order de Bruijn Graphs od Christina Boucher, Alex Bowe, Travis Gagie, Simon J. Puglisi, Kunihiko Sadakane

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Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph od Gaëtan Benoit, Claire Lemaitre, Dominique Lavenier, Erwan Drézen, Thibault Dayris, Raluca Uricaru, Guillaume Rizk

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The khmer software package: enabling efficient nucleotide sequence analysis od Michael R. Crusoe, Hussien F. Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Reed A. Cartwright, Amanda Charbonneau, Bede Constantinides, Greg Edvenson, Scott Fay, Jacob Fenton, Thomas Fenzl, Jordan Fish, Leonor García-Gutierrez, Phillip Garland, Jonathan Gluck, Iván González, Sarah Guermond, Jiarong Guo, Aditi Gupta, Joshua R. Herr, Adina Howe, Alex Hyer, Andreas Härpfer, Luiz Irber, Rhys Kidd, David Lin, Justin Lippi, Tamer Mansour, Pamela McA'Nulty, Eric McDonald, Jessica E. Mizzi, Kevin Murray, Joshua Nahum, Kaben Nanlohy, Alexander J. Nederbragt, Humberto Ortiz‐Zuazaga, Jeramia Ory, Jason Pell, Charles Pepe‐Ranney, Zachary N. Russ, Erich M. Schwarz, Camille Scott, Josiah Seaman, Scott Sievert, Jared T. Simpson, Connor T. Skennerton, James S. Spencer, S. Ramakrishnan, Daniel Standage, James A. Stapleton, Susan R. Steinman, J.J. Stein, Benjamin Taylor, Will Trimble, Heather L. Wiencko, Michael Wright, Brian Wyss, Qingpeng Zhang, en zyme, C. Titus Brown

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On the Representation of de Bruijn Graphs od Rayan Chikhi, Antoine Limasset, Shaun D. Jackman, Jared T. Simpson, Paul Medvedev

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SEQuel: improving the accuracy of genome assemblies od Roy Ronen, Christina Boucher, Hamidreza Chitsaz, Pavel A. Pevzner

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Assembly algorithms for next-generation sequencing data od Jason Miller, Sergey Koren, Granger Sutton

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Parallel De Bruijn Graph Construction and Traversal for De Novo Genome Assembly od Evangelos Georganas, Aydın Buluç, Jarrod Chapman, Leonid Oliker, Daniel S. Rokhsar, Katherine Yelick

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Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph od Zhenyu Li, Y. Chen, Dezhi Mu, Jianying Yuan, Yongyong Shi, Haiyang Zhang, Jinping Gan, Ning‐Zhe Li, Xuesong Hu, B. Liu, Bin Yang, Wei Fan

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HipMer od Evangelos Georganas, Aydın Buluç, Jarrod Chapman, Steven Hofmeyr, Chaitanya Aluru, Rob Egan, Leonid Oliker, Daniel S. Rokhsar, Katherine Yelick

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Exploiting sparseness in de novo genome assembly od Chengxi Ye, Zhanshan Sam, Charles H. Cannon, Mihai Pop, Douglas W. Yu

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De novo assembly and genotyping of variants using colored de Bruijn graphs od Zamin Iqbal, Mario Cáccamo, Isaac Turner, Paul Flicek, Gil McVean

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Disk-based k-mer counting on a PC od Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Szymon Grabowski

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Maximum Likelihood Genome Assembly od Paul Medvedev, Michael Brudno

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Cactus Graphs for Genome Comparisons od Benedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma, Bernard Suh, David Haussler

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How to apply de Bruijn graphs to genome assembly od Phillip E. C. Compeau, Pavel A. Pevzner, Glenn Tesler

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Comparative analysis of de novo transcriptome assembly od Kaitlin Clarke, Yi Yang, Ronald Marsh, Linglin Xie, Zhang Ke K.

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Readjoiner: a fast and memory efficient string graph-based sequence assembler od Giorgio Gonnella, Stefan Kurtz

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Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study od Louise Cerdeira, Adriana Ribeiro Carneiro, Rommel Thiago Jucá Ramos, S. Almeida, Vivian D ́Afonseca, Maria Paula Cruz Schneider, Jan Baumbach, Andreas Tauch, John Anthony McCulloch, Vasco Azevedo, Artur Silva

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