Risultati della ricerca - Christina Boucher

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  1. 1
    Sequencing Technologies and Analyses: Where Have We Been and Where Are We Going?

    Sequencing Technologies and Analyses: Where Have We Been and Where Are We Going? di Vikas Bansal, Christina Boucher

    Pubblicazione 2019
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  2. 2
    Building large updatable colored de Bruijn graphs via merging

    Building large updatable colored de Bruijn graphs via merging di Martin D. Muggli, Bahar Alipanahi, Christina Boucher

    Pubblicazione 2019
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  3. 3
    A comparative study of antibiotic resistance patterns in Mycobacterium tuberculosis

    A comparative study of antibiotic resistance patterns in Mycobacterium tuberculosis di Mohammadali Serajian, Conrad Testagrose, Mattia Prosperi, Christina Boucher

    Pubblicazione 2025
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  4. 4
    SEQuel: improving the accuracy of genome assemblies

    SEQuel: improving the accuracy of genome assemblies di Roy Ronen, Christina Boucher, Hamidreza Chitsaz, Pavel A. Pevzner

    Pubblicazione 2012
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  5. 5
    Misassembly detection using paired-end sequence reads and optical mapping data

    Misassembly detection using paired-end sequence reads and optical mapping data di Martin D. Muggli, Simon J. Puglisi, Roy Ronen, Christina Boucher

    Pubblicazione 2015
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  6. 6
    SPUMONI 2: improved classification using a pangenome index of minimizer digests

    SPUMONI 2: improved classification using a pangenome index of minimizer digests di Omar Ahmed, Massimiliano Rossi, Travis Gagie, Christina Boucher, Ben Langmead

    Pubblicazione 2023
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  7. 7
    Variable-Order de Bruijn Graphs

    Variable-Order de Bruijn Graphs di Christina Boucher, Alex Bowe, Travis Gagie, Simon J. Puglisi, Kunihiko Sadakane

    Pubblicazione 2015
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  8. 8
    Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful?

    Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful? di Ilya B. Slizovskiy, Kingshuk Mukherjee, Christopher Dean, Christina Boucher, Noelle Noyes

    Pubblicazione 2020
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  9. 9
    MONI: A Pangenomic Index for Finding Maximal Exact Matches

    MONI: A Pangenomic Index for Finding Maximal Exact Matches di Massimiliano Rossi, Marco Antônio Oliva, Ben Langmead, Travis Gagie, Christina Boucher

    Pubblicazione 2022
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  10. 10
    The SLOW GROWTH3 Pentatricopeptide Repeat Protein Is Required for the Splicing of Mitochondrial <i>NADH Dehydrogenase Subunit7</i> Intron 2 in Arabidopsis

    The SLOW GROWTH3 Pentatricopeptide Repeat Protein Is Required for the Splicing of Mitochondrial <i>NADH Dehydrogenase Subunit7</i> Intron 2 in Arabidopsis di Wei‐Yu Hsieh, Jo‐Chien Liao, Chiung‐Yun Chang, Thomas Harrison, Christina Boucher, Ming‐Hsiun Hsieh

    Pubblicazione 2015
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  11. 11
    Computational graph pangenomics: a tutorial on data structures and their applications

    Computational graph pangenomics: a tutorial on data structures and their applications di Jasmijn A. Baaijens, Paola Bonizzoni, Christina Boucher, Gianluca Della Vedova, Yuri Pirola, Raffaella Rizzi, Jouni Sirén

    Pubblicazione 2022
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  12. 12
    MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing

    MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput seque... di Nathalie Bonin, Enrique Doster, Hannah Worley, Lee J. Pinnell, Jonathan E Bravo, Peter Ferm, Simone Marini, Mattia Prosperi, Noelle Noyes, Paul S. Morley, Christina Boucher

    Pubblicazione 2022
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  13. 13
    Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences

    Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences di Steven M. Lakin, Alan Kuhnle, Bahar Alipanahi, Noelle Noyes, Chris Dean, Martin D. Muggli, Rob Raymond, Zaid Abdo, Mattia Prosperi, K. E. Belk, Paul S. Morley, Christina Boucher

    Pubblicazione 2019
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  14. 14
    MEGARes: an antimicrobial resistance database for high throughput sequencing

    MEGARes: an antimicrobial resistance database for high throughput sequencing di Steven M. Lakin, Chris Dean, Noelle Noyes, Adam Dettenwanger, Anne Spencer Ross, Enrique Doster, Pablo Rovira, Zaid Abdo, Kenneth L. Jones, Jaime Ruiz, K. E. Belk, Paul S. Morley, Christina Boucher

    Pubblicazione 2016
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  15. 15
    Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period

    Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period di Enrique Doster, Pablo Rovira, Noelle Noyes, Brandy A. Burgess, Xiang Yang, Margaret D. Weinroth, Steven M. Lakin, Christopher Dean, Lyndsey Linke, Roberta J. Magnuson, Kenneth Jones, Christina Boucher, Jamie Ruiz, K. E. Belk, Paul S. Morley

    Pubblicazione 2018
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  16. 16
    Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing

    Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing di Noelle Noyes, Margaret D. Weinroth, Jennifer K. Parker, Chris Dean, Steven M. Lakin, Robert A. Raymond, Pablo Rovira, Enrique Doster, Zaid Abdo, Jennifer Martin, Kenneth L. Jones, Jaime Ruiz, Christina Boucher, K. E. Belk, Paul S. Morley

    Pubblicazione 2017
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  17. 17
    Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

    Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable di Carla Mavian, Sergei L. Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne–Mieke Vandamme, Simon Dellicour, Samuel V. Scarpino, Charlotte J. Houldcroft, Julian Villabona-Arenas, Taylor Paisie, Nídia S. Trovão, Christina Boucher, Yun Zhang, Richard H. Scheuermann, Olivier Gascuel, Tommy Tsan‐Yuk Lam, Marc A. Suchard, Ana Abecasis, Eduan Wilkinson, Túlio de Oliveira, Ana I. Bento, Heiko A. Schmidt, Darren P. Martin, James Hadfield, Nuno R. Faria, Nathan D. Grubaugh, Richard A. Neher, Guy Baele, Philippe Lemey, Tanja Stadler, Jan Albert, Keith A. Crandall, Thomas Leitner, Alexandros Stamatakis, Mattia Prosperi, Marco Salemi

    Pubblicazione 2020
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