Ohcanbohtosat - Shaun D. Jackman

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  1. 1
    On the Representation of de Bruijn Graphs

    On the Representation of de Bruijn Graphs Dahkki Rayan Chikhi, Antoine Limasset, Shaun D. Jackman, Jared T. Simpson, Paul Medvedev

    Almmustuhtton 2014
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  2. 2
    ABySS-Explorer: Visualizing Genome Sequence Assemblies

    ABySS-Explorer: Visualizing Genome Sequence Assemblies Dahkki Cydney Nielsen, Shaun D. Jackman, İnanç Birol, Steven J.M. Jones

    Almmustuhtton 2009
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  3. 3
    On the Representation of De Bruijn Graphs

    On the Representation of De Bruijn Graphs Dahkki Rayan Chikhi, Antoine Limasset, Shaun D. Jackman, Jared T. Simpson, Paul Medvedev

    Almmustuhtton 2015
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  4. 4
    Sealer: a scalable gap-closing application for finishing draft genomes

    Sealer: a scalable gap-closing application for finishing draft genomes Dahkki Daniel Paulino, René L. Warren, Benjamin P. Vandervalk, Anthony Raymond, Shaun D. Jackman, İnanç Birol

    Almmustuhtton 2015
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  5. 5
    ABySS: A parallel assembler for short read sequence data

    ABySS: A parallel assembler for short read sequence data Dahkki Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J.M. Jones, İnanç Birol

    Almmustuhtton 2009
    Viečča ollesdeavstta Viečča ollesdeavstta
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  6. 6
    ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

    ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers Dahkki Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, İnanç Birol, René L. Warren

    Almmustuhtton 2018
    Viečča ollesdeavstta Viečča ollesdeavstta
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  7. 7
    BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters

    BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters Dahkki Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D. Jackman, Ka Ming Nip, Richard Mar, Hamid Mohamadi, Yaron S.N. Butterfield, A. Gordon Robertson, İnanç Birol

    Almmustuhtton 2014
    Viečča ollesdeavstta Viečča ollesdeavstta
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  8. 8
    ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

    ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter Dahkki Shaun D. Jackman, Benjamin P. Vandervalk, Hamid Mohamadi, Justin Chu, Sarah Yeo, S. Austin Hammond, Golnaz Jahesh, Hamza Khan, Lauren Coombe, René L. Warren, İnanç Birol

    Almmustuhtton 2017
    Viečča ollesdeavstta Viečča ollesdeavstta
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  9. 9
    Tigmint: correcting assembly errors using linked reads from large molecules

    Tigmint: correcting assembly errors using linked reads from large molecules Dahkki Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jöerg Bohlmann, Steven J.M. Jones, İnanç Birol

    Almmustuhtton 2018
    Viečča ollesdeavstta Viečča ollesdeavstta
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  10. 10
    Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure

    Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure Dahkki Shaun D. Jackman, Lauren Coombe, René L. Warren, Heather Kirk, Eva Trinh, Tina MacLeod, Stephen Pleasance, Pawan Pandoh, Yongjun Zhao, Robin Coope, Jean Bousquet, Jöerg Bohlmann, Steven J.M. Jones, İnanç Birol

    Almmustuhtton 2020
    Viečča ollesdeavstta Viečča ollesdeavstta
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  11. 11
    Organellar Genomes of White Spruce (<i>Picea glauca</i>): Assembly and Annotation

    Organellar Genomes of White Spruce (<i>Picea glauca</i>): Assembly and Annotation Dahkki Shaun D. Jackman, René L. Warren, Ewan A. Gibb, Benjamin P. Vandervalk, Hamid Mohamadi, Justin Chu, Anthony Raymond, Stephen Pleasance, Robin Coope, Mark R. Wildung, Carol Ritland, Jean Bousquet, Steven J.M. Jones, Jöerg Bohlmann, İnanç Birol

    Almmustuhtton 2015
    Viečča ollesdeavstta Viečča ollesdeavstta
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  12. 12
    <i>De novo</i> transcriptome assembly with ABySS

    <i>De novo</i> transcriptome assembly with ABySS Dahkki İnanç Birol, Shaun D. Jackman, Cydney Nielsen, Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Doug Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J.M. Jones

    Almmustuhtton 2009
    Viečča ollesdeavstta Viečča ollesdeavstta
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  13. 13
    Assembling the 20 Gb white spruce (<i>Picea glauca</i>) genome from whole-genome shotgun sequencing data

    Assembling the 20 Gb white spruce (<i>Picea glauca</i>) genome from whole-genome shotgun sequencing data Dahkki İnanç Birol, Anthony Raymond, Shaun D. Jackman, Stephen Pleasance, Robin Coope, Greg Taylor, Macaire M. S. Yuen, Christopher I. Keeling, Dana Brand, Benjamin P. Vandervalk, Heather Kirk, Pawan Pandoh, Richard A. Moore, Yongjun Zhao, Andrew J. Mungall, Barry Jaquish, Alvin D. Yanchuk, Carol Ritland, Brian Boyle, Jean Bousquet, Kermit Ritland, John Mackay, Jörg Bohlmann, Steven J.M. Jones

    Almmustuhtton 2013
    Viečča ollesdeavstta Viečča ollesdeavstta
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  14. 14
    Improved white spruce (<i>Picea glauca</i>) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism

    Improved white spruce (<i>Picea glauca</i>) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism Dahkki René L. Warren, Christopher I. Keeling, Macaire M. S. Yuen, Anthony Raymond, Greg Taylor, Benjamin P. Vandervalk, Hamid Mohamadi, Daniel Paulino, Readman Chiu, Shaun D. Jackman, Gordon Robertson, Chen Yang, Brian Boyle, Margarete Hoffmann, Detlef Weigel, David R. Nelson, Carol Ritland, Nathalie Isabel, Barry Jaquish, Alvin D. Yanchuk, Jean Bousquet, Steven J.M. Jones, John Mackay, İnanç Birol, Jöerg Bohlmann

    Almmustuhtton 2015
    Viečča ollesdeavstta Viečča ollesdeavstta
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  15. 15
    Concurrent <i>CIC</i> mutations, <i>IDH</i> mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers

    Concurrent <i>CIC</i> mutations, <i>IDH</i> mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers Dahkki Stephen Yip, Yaron S.N. Butterfield, Olena Morozova, Suganthi Chittaranjan, Michael Blough, Jianghong An, İnanç Birol, Charles Chesnelong, Readman Chiu, Eric Chuah, Richard Corbett, Roderick Docking, Marlo Firme, Martin Hirst, Shaun D. Jackman, Aly Karsan, Haiyan Li, David N. Louis, Alexandra Maslova, Richard A. Moore, Annie Moradian, Karen Mungall, Marco Perizzolo, Jenny Q. Qian, Glòria Roldán, Eric E. Smith, Jessica Tamura‐Wells, Nina Thiessen, Richard Varhol, Samuel Weiss, Wei Wu, Sean Young, Yongjun Zhao, Andrew J. Mungall, Steven J.M. Jones, Gregg B. Morin, Jennifer A. Chan, J. Gregory Cairncross, Marco A. Marra

    Almmustuhtton 2011
    Viečča ollesdeavstta Viečča ollesdeavstta
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  16. 16
    A robust benchmark for germline structural variant detection

    A robust benchmark for germline structural variant detection Dahkki Justin M. Zook, Nancy F. Hansen, Nathan D. Olson, Lesley M. Chapman, James C. Mullikin, Chunlin Xiao, Stephen T. Sherry, Sergey Koren, Adam M. Phillippy, Paul C. Boutros, Sayed Mohammad Ebrahim Sahraeian, Vincent Huang, Alexandre Rouette, Noah Alexander, Christopher E. Mason, Iman Hajirasouliha, Camir Ricketts, Joyce Lee, Rick Tearle, Ian T. Fiddes, Álvaro Martínez Barrio, Jeremiah A. Wala, Andrew Carroll, Noushin Ghaffari, Oscar L. Rodriguez, Ali Bashir, Shaun D. Jackman, John J. Farrell, Aaron M. Wenger, Can Alkan, Arda Söylev, Michael C. Schatz, Shilpa Garg, George M. Church, Tobias Marschall, Ken Chen, Xian Fan, Adam C. English, Jeffrey Rosenfeld, Weichen Zhou, Ryan E. Mills, Jay M. Sage, Jennifer R. Davis, Michael D. Kaiser, John S. Oliver, Anthony P. Catalano, Mark Chaisson, Noah Spies, Fritz J. Sedlazeck, Marc Salit

    Almmustuhtton 2019
    Viečča ollesdeavstta Viečča ollesdeavstta
    Pré-impressão
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  17. 17
    A robust benchmark for detection of germline large deletions and insertions

    A robust benchmark for detection of germline large deletions and insertions Dahkki Justin M. Zook, Nancy F. Hansen, Nathan D. Olson, Lesley M. Chapman, James C. Mullikin, Chunlin Xiao, Stephen T. Sherry, Sergey Koren, Adam M. Phillippy, Paul C. Boutros, Sayed Mohammad Ebrahim Sahraeian, Vincent Huang, Alexandre Rouette, Noah Alexander, Christopher E. Mason, Iman Hajirasouliha, Camir Ricketts, Joyce Lee, Rick Tearle, Ian T. Fiddes, Álvaro Martínez Barrio, Jeremiah A. Wala, Andrew Carroll, Noushin Ghaffari, Oscar L. Rodriguez, Ali Bashir, Shaun D. Jackman, John J. Farrell, Aaron M. Wenger, Can Alkan, Arda Söylev, Michael C. Schatz, Shilpa Garg, George M. Church, Tobias Marschall, Ken Chen, Xian Fan, Adam C. English, Jeffrey Rosenfeld, Weichen Zhou, Ryan E. Mills, Jay M. Sage, Jennifer R. Davis, Michael D. Kaiser, John S. Oliver, Anthony P. Catalano, Mark Chaisson, Noah Spies, Fritz J. Sedlazeck, Marc Salit

    Almmustuhtton 2020
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  18. 18
    Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma

    Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma Dahkki Ryan D. Morin, María Méndez-Lago, Andrew J. Mungall, Rodrigo Goya, Karen Mungall, Richard Corbett, Nathalie A. Johnson, Tesa Severson, Readman Chiu, Matthew A. Field, Shaun D. Jackman, Martin Krzywinski, David W. Scott, Diane L. Trinh, Jessica Tamura‐Wells, Sa Li, Marlo Firme, Sanja Rogić, Malachi Griffith, Susanna Chan, Oleksandr Yakovenko, Irmtraud M. Meyer, Eric Y. Stutheit-Zhao, Duane E. Smailus, Michelle Moksa, Suganthi Chittaranjan, Lisa M. Rimsza, Angela Brooks‐Wilson, John J. Spinelli, Susana Ben‐Neriah, Barbara Meissner, Bruce W. Woolcock, Merrill Boyle, Helen McDonald, Angela Tam, Yongjun Zhao, Allen Delaney, Thomas Zeng, Kane Tse, Yaron S.N. Butterfield, İnanç Birol, Robert A. Holt, Jacqueline E. Schein, Douglas E. Horsman, Richard A. Moore, Steven J.M. Jones, Joseph M. Connors, Martin Hirst, Randy D. Gascoyne, Marco A. Marra

    Almmustuhtton 2011
    Viečča ollesdeavstta Viečča ollesdeavstta
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  19. 19
    The genetic landscape of high-risk neuroblastoma

    The genetic landscape of high-risk neuroblastoma Dahkki Trevor J. Pugh, Olena Morozova, Edward F. Attiyeh, Shahab Asgharzadeh, Jun S. Wei, Daniel Auclair, Scott L. Carter, Kristian Cibulskis, Megan Hanna, Adam Kieżun, Jaegil Kim, Michael S. Lawrence, Lee Lichenstein, Aaron McKenna, Chandra Sekhar Pedamallu, Alex H. Ramos, Erica Shefler, Andrey Sivachenko, Carrie Sougnez, Chip Stewart, Adrian Ally, İnanç Birol, Readman Chiu, Richard Corbett, Martin Hirst, Shaun D. Jackman, Baljit Kamoh, Alireza Hadj Khodabakshi, Martin Krzywinski, Allan Lo, Richard A. Moore, Karen Mungall, Jenny Q. Qian, Angela Tam, Nina Thiessen, Yongjun Zhao, Kristina A. Cole, Maura Diamond, Sharon J. Diskin, Yaël P. Mossé, Andrew Wood, Lingyun Ji, Richard Sposto, Thomas Badgett, Wendy B. London, Yvonne Moyer, Julie M. Gastier‐Foster, Malcolm A. Smith, Jaime M. Guidry Auvil, Daniela S. Gerhard, Michael D. Hogarty, Steven J.M. Jones, Eric S. Lander, Stacey Gabriel, Gad Getz, Robert C. Seeger, Javed Khan, Marco A. Marra, Matthew Meyerson, John M. Maris

    Almmustuhtton 2013
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  20. 20
    Assemblathon 1: A competitive assessment of de novo short read assembly methods

    Assemblathon 1: A competitive assessment of de novo short read assembly methods Dahkki Dent Earl, Keith Bradnam, John St. John, Aaron E. Darling, Dawei Lin, Joseph Fass, Hung On Ken Yu, Vince Buffalo, Daniel R. Zerbino, Mark Diekhans, Ngan Nguyen, Pramila Ariyaratne, Wing‐Kin Sung, Zemin Ning, Matthias Haimel, Jared T. Simpson, Nuno A. Fonseca, İnanç Birol, Roderick Docking, Isaac Ho, Daniel S. Rokhsar, Rayan Chikhi, Dominique Lavenier, Guillaume Chapuis, Delphine Naquin, Nicolas Maillet, Michael C. Schatz, David R. Kelley, Adam M. Phillippy, Sergey Koren, Shiaw‐Pyng Yang, Wei Wu, Wen‐Chi Chou, Anuj Srivastava, Timothy I. Shaw, J. Graham Ruby, Peter Skewes-Cox, Miguel Betegon, Michelle Dimon, Victor Solovyev, Igor Seledtsov, Petr Kosarev, Denis Vorobyev, Ricardo H. Ramírez-González, Richard M. Leggett, Dan MacLean, Fangfang Xia, Ruibang Luo, Zhenyu Li, Yinlong Xie, Binghang Liu, Sante Gnerre, Iain MacCallum, Dariusz Przybylski, Filipe J. Ribeiro, Shuangye Yin, Ted Sharpe, Giles Hall, Paul Kersey, Richard Durbin, Shaun D. Jackman, Jarrod Chapman, Xiaoqiu Huang, Joseph L. DeRisi, Mario Cáccamo, Yingrui Li, David B. Jaffe, Richard E. Green, David Haussler, Ian Korf, Benedict Paten

    Almmustuhtton 2011
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