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  1. 1
    IDBA – A Practical Iterative de Bruijn Graph De Novo Assembler

    IDBA – A Practical Iterative de Bruijn Graph De Novo Assembler de réir Yu Peng, Henry C. M. Leung, Siu‐Ming Yiu, Francis Y. L. Chin

    Foilsithe / Cruthaithe 2010
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  2. 2
    Read mapping on de Bruijn graphs

    Read mapping on de Bruijn graphs de réir Antoine Limasset, Bastien Cazaux, Éric Rivals, Pierre Peterlongo

    Foilsithe / Cruthaithe 2016
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  3. 3
    Variable-Order de Bruijn Graphs

    Variable-Order de Bruijn Graphs de réir Christina Boucher, Alex Bowe, Travis Gagie, Simon J. Puglisi, Kunihiko Sadakane

    Foilsithe / Cruthaithe 2015
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  4. 4
    Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph

    Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph de réir Gaëtan Benoit, Claire Lemaitre, Dominique Lavenier, Erwan Drézen, Thibault Dayris, Raluca Uricaru, Guillaume Rizk

    Foilsithe / Cruthaithe 2015
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  5. 5
    The khmer software package: enabling efficient nucleotide sequence analysis

    The khmer software package: enabling efficient nucleotide sequence analysis de réir Michael R. Crusoe, Hussien F. Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Reed A. Cartwright, Amanda Charbonneau, Bede Constantinides, Greg Edvenson, Scott Fay, Jacob Fenton, Thomas Fenzl, Jordan Fish, Leonor García-Gutierrez, Phillip Garland, Jonathan Gluck, Iván González, Sarah Guermond, Jiarong Guo, Aditi Gupta, Joshua R. Herr, Adina Howe, Alex Hyer, Andreas Härpfer, Luiz Irber, Rhys Kidd, David Lin, Justin Lippi, Tamer Mansour, Pamela McA'Nulty, Eric McDonald, Jessica E. Mizzi, Kevin Murray, Joshua Nahum, Kaben Nanlohy, Alexander J. Nederbragt, Humberto Ortiz‐Zuazaga, Jeramia Ory, Jason Pell, Charles Pepe‐Ranney, Zachary N. Russ, Erich M. Schwarz, Camille Scott, Josiah Seaman, Scott Sievert, Jared T. Simpson, Connor T. Skennerton, James S. Spencer, S. Ramakrishnan, Daniel Standage, James A. Stapleton, Susan R. Steinman, J.J. Stein, Benjamin Taylor, Will Trimble, Heather L. Wiencko, Michael Wright, Brian Wyss, Qingpeng Zhang, en zyme, C. Titus Brown

    Foilsithe / Cruthaithe 2015
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  6. 6
    On the Representation of de Bruijn Graphs

    On the Representation of de Bruijn Graphs de réir Rayan Chikhi, Antoine Limasset, Shaun D. Jackman, Jared T. Simpson, Paul Medvedev

    Foilsithe / Cruthaithe 2014
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  7. 7
    SEQuel: improving the accuracy of genome assemblies

    SEQuel: improving the accuracy of genome assemblies de réir Roy Ronen, Christina Boucher, Hamidreza Chitsaz, Pavel A. Pevzner

    Foilsithe / Cruthaithe 2012
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  8. 8
    Assembly algorithms for next-generation sequencing data

    Assembly algorithms for next-generation sequencing data de réir Jason Miller, Sergey Koren, Granger Sutton

    Foilsithe / Cruthaithe 2010
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  9. 9
    Parallel De Bruijn Graph Construction and Traversal for De Novo Genome Assembly

    Parallel De Bruijn Graph Construction and Traversal for De Novo Genome Assembly de réir Evangelos Georganas, Aydın Buluç, Jarrod Chapman, Leonid Oliker, Daniel S. Rokhsar, Katherine Yelick

    Foilsithe / Cruthaithe 2014
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  10. 10
    Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph

    Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph de réir Zhenyu Li, Y. Chen, Dezhi Mu, Jianying Yuan, Yongyong Shi, Haiyang Zhang, Jinping Gan, Ning‐Zhe Li, Xuesong Hu, B. Liu, Bin Yang, Wei Fan

    Foilsithe / Cruthaithe 2011
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  11. 11
    HipMer

    HipMer de réir Evangelos Georganas, Aydın Buluç, Jarrod Chapman, Steven Hofmeyr, Chaitanya Aluru, Rob Egan, Leonid Oliker, Daniel S. Rokhsar, Katherine Yelick

    Foilsithe / Cruthaithe 2015
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  12. 12
    Exploiting sparseness in de novo genome assembly

    Exploiting sparseness in de novo genome assembly de réir Chengxi Ye, Zhanshan Sam, Charles H. Cannon, Mihai Pop, Douglas W. Yu

    Foilsithe / Cruthaithe 2012
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  13. 13
    De novo assembly and genotyping of variants using colored de Bruijn graphs

    De novo assembly and genotyping of variants using colored de Bruijn graphs de réir Zamin Iqbal, Mario Cáccamo, Isaac Turner, Paul Flicek, Gil McVean

    Foilsithe / Cruthaithe 2012
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  14. 14
    Disk-based k-mer counting on a PC

    Disk-based k-mer counting on a PC de réir Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Szymon Grabowski

    Foilsithe / Cruthaithe 2013
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  15. 15
    Maximum Likelihood Genome Assembly

    Maximum Likelihood Genome Assembly de réir Paul Medvedev, Michael Brudno

    Foilsithe / Cruthaithe 2009
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  16. 16
    Cactus Graphs for Genome Comparisons

    Cactus Graphs for Genome Comparisons de réir Benedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma, Bernard Suh, David Haussler

    Foilsithe / Cruthaithe 2011
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  17. 17
    How to apply de Bruijn graphs to genome assembly

    How to apply de Bruijn graphs to genome assembly de réir Phillip E. C. Compeau, Pavel A. Pevzner, Glenn Tesler

    Foilsithe / Cruthaithe 2011
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  18. 18
    Comparative analysis of de novo transcriptome assembly

    Comparative analysis of de novo transcriptome assembly de réir Kaitlin Clarke, Yi Yang, Ronald Marsh, Linglin Xie, Zhang Ke K.

    Foilsithe / Cruthaithe 2013
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  19. 19
    Readjoiner: a fast and memory efficient string graph-based sequence assembler

    Readjoiner: a fast and memory efficient string graph-based sequence assembler de réir Giorgio Gonnella, Stefan Kurtz

    Foilsithe / Cruthaithe 2012
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  20. 20
    Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study

    Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study de réir Louise Cerdeira, Adriana Ribeiro Carneiro, Rommel Thiago Jucá Ramos, S. Almeida, Vivian D ́Afonseca, Maria Paula Cruz Schneider, Jan Baumbach, Andreas Tauch, John Anthony McCulloch, Vasco Azevedo, Artur Silva

    Foilsithe / Cruthaithe 2011
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