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  1. 1
    IDBA – A Practical Iterative de Bruijn Graph De Novo Assembler

    IDBA – A Practical Iterative de Bruijn Graph De Novo Assembler by Yu Peng, Henry C. M. Leung, Siu‐Ming Yiu, Francis Y. L. Chin

    Published 2010
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  2. 2
    Read mapping on de Bruijn graphs

    Read mapping on de Bruijn graphs by Antoine Limasset, Bastien Cazaux, Éric Rivals, Pierre Peterlongo

    Published 2016
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  3. 3
    Variable-Order de Bruijn Graphs

    Variable-Order de Bruijn Graphs by Christina Boucher, Alex Bowe, Travis Gagie, Simon J. Puglisi, Kunihiko Sadakane

    Published 2015
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  4. 4
    Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph

    Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph by Gaëtan Benoit, Claire Lemaitre, Dominique Lavenier, Erwan Drézen, Thibault Dayris, Raluca Uricaru, Guillaume Rizk

    Published 2015
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  5. 5
    The khmer software package: enabling efficient nucleotide sequence analysis

    The khmer software package: enabling efficient nucleotide sequence analysis by Michael R. Crusoe, Hussien F. Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Reed A. Cartwright, Amanda Charbonneau, Bede Constantinides, Greg Edvenson, Scott Fay, Jacob Fenton, Thomas Fenzl, Jordan Fish, Leonor García-Gutierrez, Phillip Garland, Jonathan Gluck, Iván González, Sarah Guermond, Jiarong Guo, Aditi Gupta, Joshua R. Herr, Adina Howe, Alex Hyer, Andreas Härpfer, Luiz Irber, Rhys Kidd, David Lin, Justin Lippi, Tamer Mansour, Pamela McA'Nulty, Eric McDonald, Jessica E. Mizzi, Kevin Murray, Joshua Nahum, Kaben Nanlohy, Alexander J. Nederbragt, Humberto Ortiz‐Zuazaga, Jeramia Ory, Jason Pell, Charles Pepe‐Ranney, Zachary N. Russ, Erich M. Schwarz, Camille Scott, Josiah Seaman, Scott Sievert, Jared T. Simpson, Connor T. Skennerton, James S. Spencer, S. Ramakrishnan, Daniel Standage, James A. Stapleton, Susan R. Steinman, J.J. Stein, Benjamin Taylor, Will Trimble, Heather L. Wiencko, Michael Wright, Brian Wyss, Qingpeng Zhang, en zyme, C. Titus Brown

    Published 2015
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  6. 6
    On the Representation of de Bruijn Graphs

    On the Representation of de Bruijn Graphs by Rayan Chikhi, Antoine Limasset, Shaun D. Jackman, Jared T. Simpson, Paul Medvedev

    Published 2014
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  7. 7
    SEQuel: improving the accuracy of genome assemblies

    SEQuel: improving the accuracy of genome assemblies by Roy Ronen, Christina Boucher, Hamidreza Chitsaz, Pavel A. Pevzner

    Published 2012
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  8. 8
    Assembly algorithms for next-generation sequencing data

    Assembly algorithms for next-generation sequencing data by Jason Miller, Sergey Koren, Granger Sutton

    Published 2010
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  9. 9
    Parallel De Bruijn Graph Construction and Traversal for De Novo Genome Assembly

    Parallel De Bruijn Graph Construction and Traversal for De Novo Genome Assembly by Evangelos Georganas, Aydın Buluç, Jarrod Chapman, Leonid Oliker, Daniel S. Rokhsar, Katherine Yelick

    Published 2014
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  10. 10
    Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph

    Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph by Zhenyu Li, Y. Chen, Dezhi Mu, Jianying Yuan, Yongyong Shi, Haiyang Zhang, Jinping Gan, Ning‐Zhe Li, Xuesong Hu, B. Liu, Bin Yang, Wei Fan

    Published 2011
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  11. 11
    HipMer

    HipMer by Evangelos Georganas, Aydın Buluç, Jarrod Chapman, Steven Hofmeyr, Chaitanya Aluru, Rob Egan, Leonid Oliker, Daniel S. Rokhsar, Katherine Yelick

    Published 2015
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  12. 12
    Exploiting sparseness in de novo genome assembly

    Exploiting sparseness in de novo genome assembly by Chengxi Ye, Zhanshan Sam, Charles H. Cannon, Mihai Pop, Douglas W. Yu

    Published 2012
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  13. 13
    De novo assembly and genotyping of variants using colored de Bruijn graphs

    De novo assembly and genotyping of variants using colored de Bruijn graphs by Zamin Iqbal, Mario Cáccamo, Isaac Turner, Paul Flicek, Gil McVean

    Published 2012
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  14. 14
    Disk-based k-mer counting on a PC

    Disk-based k-mer counting on a PC by Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Szymon Grabowski

    Published 2013
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  15. 15
    Maximum Likelihood Genome Assembly

    Maximum Likelihood Genome Assembly by Paul Medvedev, Michael Brudno

    Published 2009
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  16. 16
    Cactus Graphs for Genome Comparisons

    Cactus Graphs for Genome Comparisons by Benedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma, Bernard Suh, David Haussler

    Published 2011
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  17. 17
    How to apply de Bruijn graphs to genome assembly

    How to apply de Bruijn graphs to genome assembly by Phillip E. C. Compeau, Pavel A. Pevzner, Glenn Tesler

    Published 2011
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  18. 18
    Comparative analysis of de novo transcriptome assembly

    Comparative analysis of de novo transcriptome assembly by Kaitlin Clarke, Yi Yang, Ronald Marsh, Linglin Xie, Zhang Ke K.

    Published 2013
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  19. 19
    Readjoiner: a fast and memory efficient string graph-based sequence assembler

    Readjoiner: a fast and memory efficient string graph-based sequence assembler by Giorgio Gonnella, Stefan Kurtz

    Published 2012
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  20. 20
    Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study

    Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study by Louise Cerdeira, Adriana Ribeiro Carneiro, Rommel Thiago Jucá Ramos, S. Almeida, Vivian D ́Afonseca, Maria Paula Cruz Schneider, Jan Baumbach, Andreas Tauch, John Anthony McCulloch, Vasco Azevedo, Artur Silva

    Published 2011
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