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cPath: open source software for collecting, storing, and querying biological pathways by Ethan Cerami, Gary D. Bader, Benjamin Groß, Chris Sander

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Health-information exchange: why are we doing it, and what are we doing? by Gilad J. Kuperman

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NDEx, the Network Data Exchange by Dexter Pratt, Jing Chen, David Welker, Ricardo Rivas, Rudolf Pillich, Vladimir Rynkov, Keiichiro Ono, Carol Miello, Lyndon Hicks, Sándor Szalma, Aleksandar Stojmirović, Radu Dobrin, Michael Braxenthaler, Jan Kuentzer, Barry Demchak, Trey Ideker

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Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format by Akira R. Kinjo, Hiroshi Suzuki, Riu Yamashita, Yojiro Ikegawa, Takahiro KUDOU, Ryo Igarashi, Yumiko Kengaku, Hyun Jin Cho, Daron M. Standley, Atsushi Nakagawa, H. Nakamura

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The BioPAX community standard for pathway data sharing by Emek Demir, Michael P. Cary, Suzanne Paley, Ken Fukuda, Christian Lemer, Imre Västrik, Guanming Wu, Peter D’Eustachio, Carl F. Schaefer, Joanne Luciano, Frank Schacherer, Irma Martínez‐Flores, Zhenjun Hu, Verónica Jiménez‐Jacinto, Joshi-Tope Geeta, Kumaran Kandasamy, Alejandra López-Fuentes, Huaiyu Mi, Elgar Pichler, Igor Rodchenkov, Andrea Splendiani, Sasha Tkachev, Jeremy Zucker, Gopal Gopinath, Harsha Rajasimha, Ranjani Ramakrishnan, Imran Shah, Mustafa Syed, Nadia Anwar, Özgün Babur, Michael L. Blinov, Erik Brauner, Dan Corwin, Sylva L. Donaldson, Frank Gibbons, Robert N. Goldberg, Peter Hornbeck, Augustin Luna, Peter Murray‐Rust, Eric Neumann, Oliver Ruebenacker, Matthias Samwald, Martijn van Iersel, Sarala Wimalaratne, K.W. Allen, Burk Braun, Michelle Whirl‐Carrillo, Kei-Hoi Cheung, Kam D. Dahlquist, Andrew Finney, Marc Gillespie, Elizabeth M. Glass, Li Gong, Robin Haw, Michael Honig, Olivier Hubaut, David W. Kane, Shiva Krupa, Martina Kutmon, Julie Mosty Leonard, Debbie Marks, David Merberg, Victoria Petri, Alexander R. Pico, Dean Ravenscroft, Liya Ren, Nigam H. Shah, Margot Sunshine, Rebecca Tang, Ryan Whaley, Stan Letovksy, Kenneth H. Buetow, Andrey Rzhetsky, Vincent Schächter, Bruno Sobral, Uḡur Doḡrusöz, Shannon K. McWeeney, Mirit I. Aladjem, Ewan Birney, Julio Collado‐Vides, Susumu Goto, Michael Hucka, Nicolas Le Novère, Natalia Maltsev, Akhilesh Pandey, Paul D. Thomas, Edgar Wingender, Peter D. Karp, Chris Sander, Gary D. Bader

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MorphML: Level 1 of the NeuroML Standards for Neuronal Morphology Data and Model Specification by Sharon Crook, Padraig Gleeson, Fred Howell, Joseph Svitak, R. Angus Silver

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Protein interaction data curation: the International Molecular Exchange (IMEx) consortium by Sandra Orchard, Samuel Kerrien, Sara Abbani, Bruno Aranda, Jignesh Bhate, Shelby Bidwell, Alan Bridge, Leonardo Briganti, Fiona S. L. Brinkman, Gianni Cesareni, Andrew Chatr‐aryamontri, Émilie Chautard, Carol Chen, Marine Dumousseau, Johannes B. Goll, Robert E. W. Hancock, Linda I. Hannick, Igor Jurišica, Jyoti Khadake, David J. Lynn, Usha Mahadevan, Livia Perfetto, Arathi Raghunath, Sylvie Ricard‐Blum, Bernd Roechert, Łukasz Salwiński, Volker Stümpflen, Mike Tyers, Peter Uetz, Ioannis Xénarios, Henning Hermjakob

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Electronic database of arterial aneurysms by Fabiano Luiz Erzinger, Osvaldo Malafaia, Jorge Rufino Ribas Timi

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Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project by Susan Rea, Jyotishman Pathak, Guergana Savova, Thomas A. Oniki, Les Westberg, Calvin E Beebe, Cui Tao, Craig G. Parker, Peter J. Haug, Stanley M. Huff, Christopher G. Chute

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A Standard MIGS/MIMS Compliant XML Schema: Toward the Development of the Genomic Contextual Data Markup Language (GCDML) by Renzo Kottmann, Tanya Gray, Sean D. Murphy, Leonid Kagan, Saul Kravitz, Thierry Lombardot, Dawn Field, Frank Oliver Glöckner

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Hurdles, Barriers, and Successes of a National Living Donor Kidney Exchange Program by Marry de Klerk, Marian D. Witvliet, Bernadette Haase‐Kromwijk, Frans H.J. Claas, Willem Weimar

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RDML: structured language and reporting guidelines for real-time quantitative PCR data by Steve Lefever, Jan Hellemans, Filip Pattyn, Daniel R. Przybylski, Chris Taylor, R. Geurts, Andreas Untergasser, Jo Vandesompele

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DASMiner: discovering and integrating data from DAS sources by Diogo F. T. Veiga, Helena Deus, Caner Akdemir, Ana Tereza Ribeiro de Vasconcelos, Jonas S. Almeida

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Electronic Health Record Standards by D. Kalra

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Run-Time Interoperability Between Neuronal Network Simulators Based on the MUSIC Framework by Mikael Djurfeldt, J. J. Johannes Hjorth, Jochen Martin Eppler, Niraj Dudani, Moritz Helias, Tobias C. Potjans, Upinder S. Bhalla, Markus Diesmann, Jeanette Hellgren Kotaleski, Örjan Ekeberg

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The Matchmaker Exchange API: Automating Patient Matching Through the Exchange of Structured Phenotypic and Genotypic Profiles by Orion J. Buske, François Schiettecatte, Benjamin Hutton, Sergiu Dumitriu, Andriy Misyura, Lijia Huang, Taila Hartley, Marta Gîrdea, Nara Sobreira, Chris Mungall, Michael Brudno

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A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB by Tim F. Rayner, Philippe Rocca‐Serra, Paul T. Spellman, Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald S Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J. Stoeckert, Joseph White, Patricia L. Whetzel, Farrell Wymore, Helen Parkinson, Uğis Sarkans, Catherine A. Ball, Alvis Brāzma

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A Framework for evaluating the costs, effort, and value of nationwide health information exchange by Brian E. Dixon, Atif Zafar, J. Marc Overhage

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Creating a data exchange strategy for radiotherapy research: Towards federated databases and anonymised public datasets by Tomas Skripcak, Claus Belka, Walter Bosch, Carsten Brink, Thomas Brunner, Volker Budach, Daniel Büttner, Jürgen Debus, André Dekker, Cai Grau, S. Gulliford, Coen Hurkmans, Uwe Just, Mechthild Krause, Philippe Lambin, Johannes A. Langendijk, Rolf Lewensohn, Armin Lühr, P. Maingon, Michele Masucci, Maximilian Niyazi, Philip Poortmans, Monique Simon, Heinz Schmidberger, Emiliano Spezi, Martin Stuschke, Vincenzo Valentini, Marcel Verheij, Gillian Whitfield, Björn Zackrisson, Daniel Zips, Michaël Baumann

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National-scale clinical information exchange in the United Kingdom: lessons for the United States by Thomas H. Payne, Don E. Detmer, Jeremy C Wyatt, Iain Buchan

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