Výsledky vyhledávání - Uḡur Doḡrusöz

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  1. 1
    ChiBE: interactive visualization and manipulation of BioPAX pathway models

    ChiBE: interactive visualization and manipulation of BioPAX pathway models Autor Özgün Babur, Uḡur Doḡrusöz, Emek Demir, Chris Sander

    Vydáno 2009
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    Artigo
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  2. 2
    PathwayMapper: a collaborative visual web editor for cancer pathways and genomic data

    PathwayMapper: a collaborative visual web editor for cancer pathways and genomic data Autor Istemi Bahceci, Uḡur Doḡrusöz, Konnor La, Özgün Babur, Jianjiong Gao, Nikolaus Schultz

    Vydáno 2017
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  3. 3
    P<scp>atika</scp>: an integrated visual environment for collaborative construction and analysis of cellular pathways

    P<scp>atika</scp>: an integrated visual environment for collaborative construction and analysis of cellular pathways Autor Esra Demir, Özgün Babur, Uḡur Doḡrusöz, Attila Gürsoy, G. Nisanci, Rengül Çetin-Atalay, Mehmet Öztürk

    Vydáno 2002
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    Artigo
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  4. 4
    Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps

    Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps Autor Hasan Balcı, Metin Can Siper, Nasim Saleh, Ilkin Safarli, Ludovic Roy, Merve Kilicarslan, Rumeysa Ozaydin, Alexander Mazein, Charles Auffray, Özgün Babur, Emek Demir, Uḡur Doḡrusöz

    Vydáno 2020
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  5. 5
    Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal

    Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal Autor Jianjiong Gao, Bülent Arman Aksoy, Uḡur Doḡrusöz, Gideon Dresdner, Benjamin Groß, S. Onur Sumer, Yichao Sun, Anders J. Skanderup, Rileen Sinha, Erik Larsson, Ethan Cerami, Chris Sander, Nikolaus Schultz

    Vydáno 2013
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  6. 6
    The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data

    The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data Autor Ethan Cerami, Jianjiong Gao, Uḡur Doḡrusöz, Benjamin Groß, S. Onur Sumer, Bülent Arman Aksoy, Anders J. Skanderup, Caitlin J. Byrne, Michael Heuer, Erik Larsson, Yevgeniy Antipin, Boris Reva, Arthur P. Goldberg, Chris Sander, Nikolaus Schultz

    Vydáno 2012
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  7. 7
    Causal interactions from proteomic profiles: Molecular data meet pathway knowledge

    Causal interactions from proteomic profiles: Molecular data meet pathway knowledge Autor Özgün Babur, Augustin Luna, Anil Korkut, Funda Durupınar, Metin Can Siper, Uḡur Doḡrusöz, Alvaro Sebastian Vaca Jacome, Ryan Peckner, Karen E. Christianson, Jacob D. Jaffe, Paul T. Spellman, Joseph E. Aslan, Chris Sander, Emek Demir

    Vydáno 2021
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  8. 8
    Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0

    Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0 Autor Adrien Rougny, Vasundra Touré, Stuart Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Uḡur Doḡrusöz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly Sorokin, Falk Schreiber, Augustin Luna

    Vydáno 2019
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  9. 9
    Software support for SBGN maps: SBGN-ML and LibSBGN

    Software support for SBGN maps: SBGN-ML and LibSBGN Autor Martijn van Iersel, Alice C. Villéger, Tobias Czauderna, Sarah Boyd, Frank Bergmann, Augustin Luna, Emek Demir, Anatoly Sorokin, Uḡur Doḡrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber

    Vydáno 2012
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  10. 10
    Community-driven roadmap for integrated disease maps

    Community-driven roadmap for integrated disease maps Autor Marek Ostaszewski, Stephan Gebel, Inna Kuperstein, Alexander Mazein, Andreï Zinovyev, Uḡur Doḡrusöz, Jan Hasenauer, Ronan M. T. Fleming, Nicolas Le Novère, Piotr Gawron, Thomas Ligon, Anna Niarakis, David Nickerson, Daniel Weindl, Rudi Balling, Emmanuel Barillot, Charles Auffray, Reinhard Schneider

    Vydáno 2018
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  11. 11
    Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms

    Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms Autor Alexander Mazein, Marek Ostaszewski, Inna Kuperstein, Steven Watterson, Nicolas Le Novère, Diane Lefaudeux, Bertrand De Meulder, Johann Pellet, Irina Balaur, Mansoor Saqi, Maria Manuela Nogueira, Feng He, Andrew Parton, Nicolas Lemonnier, Piotr Gawron, Stephan Gebel, Pierre Hainaut, Markus Ollert, Uḡur Doḡrusöz, Emmanuel Barillot, Andreï Zinovyev, Reinhard Schneider, Rudi Balling, Charles Auffray

    Vydáno 2018
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  12. 12
    Pathway Commons 2019 Update: integration, analysis and exploration of pathway data

    Pathway Commons 2019 Update: integration, analysis and exploration of pathway data Autor Igor Rodchenkov, Özgün Babur, Augustin Luna, Bülent Arman Aksoy, Jeffrey V. Wong, Dylan Fong, Max Franz, Metin Can Siper, Manfred Cheung, Michael Wrana, Harsh Mistry, Logan Mosier, Jonah Dlin, Qizhi Wen, Caitlin O’Callaghan, Wanxin Li, G Domingues Elder, Peter T. Smith, Christian Dallago, Ethan Cerami, Benjamin Groß, Uḡur Doḡrusöz, Emek Demir, Gary D. Bader, Chris Sander

    Vydáno 2019
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  13. 13
    The Systems Biology Graphical Notation

    The Systems Biology Graphical Notation Autor Nicolas Le Novère, Michael Hucka, Huaiyu Mi, Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala Wimalaratne, Frank T Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villéger, Sarah Boyd, Laurence Calzone, Mélanie Courtot, Uḡur Doḡrusöz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert M. Sauro, Jacky L. Snoep, Kurt W. Kohn, Hiroaki Kitano

    Vydáno 2009
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  14. 14
    Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

    Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal Autor Ino de Bruijn, Ritika Kundra, Brooke Mastrogiacomo, Thinh Ngoc Tran, Luke Sikina, Tali Mazor, Xiang Li, Angelica Ochoa, Gaofei Zhao, Bryan Lai, Adam Abeshouse, Diana Baiceanu, Ersin Ciftci, Uḡur Doḡrusöz, Andrew Dufilie, Ziya Erkoç, Elena Garcia Lara, Zhaoyuan Fu, Benjamin E. Gross, Charles Haynes, Allison P. Heath, David Higgins, Prasanna Jagannathan, Karthik Kalletla, Priti Kumari, James Lindsay, Aaron Lisman, Bas Leenknegt, Pieter Lukasse, Divya Madela, Ramyasree Madupuri, Pim van Nierop, Oleguer Plantalech, Joyce Quach, Adam Resnick, Sander Y.A. Rodenburg, Baby A. Satravada, Fedde Schaeffer, Robert L. Sheridan, Jessica Singh, Rajat Sirohi, S. Onur Sumer, Sjoerd van Hagen, Avery Wang, Manda Wilson, Hongxin Zhang, Kelsey Zhu, Nicole Rusk, Samantha Brown, Jessica A. Lavery, Katherine S. Panageas, Julia E. Rudolph, Michele L. Lenoue-Newton, Jeremy L. Warner, Xindi Guo, Haley Hunter-Zinck, Thomas Yu, Shirin Pilai, Chelsea Nichols, Stuart M. Gardos, John Philip, Kenneth L. Kehl, Gregory J. Riely, Deborah Schrag, Jocelyn Lee, Michael V. Fiandalo, Shawn M. Sweeney, Trevor J. Pugh, Chris Sander, Ethan Cerami, Jianjiong Gao, Nikolaus Schultz

    Vydáno 2023
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  15. 15
    The BioPAX community standard for pathway data sharing

    The BioPAX community standard for pathway data sharing Autor Emek Demir, Michael P. Cary, Suzanne Paley, Ken Fukuda, Christian Lemer, Imre Västrik, Guanming Wu, Peter D’Eustachio, Carl F. Schaefer, Joanne Luciano, Frank Schacherer, Irma Martínez‐Flores, Zhenjun Hu, Verónica Jiménez‐Jacinto, Joshi-Tope Geeta, Kumaran Kandasamy, Alejandra López-Fuentes, Huaiyu Mi, Elgar Pichler, Igor Rodchenkov, Andrea Splendiani, Sasha Tkachev, Jeremy Zucker, Gopal Gopinath, Harsha Rajasimha, Ranjani Ramakrishnan, Imran Shah, Mustafa Syed, Nadia Anwar, Özgün Babur, Michael L. Blinov, Erik Brauner, Dan Corwin, Sylva L. Donaldson, Frank Gibbons, Robert N. Goldberg, Peter Hornbeck, Augustin Luna, Peter Murray‐Rust, Eric Neumann, Oliver Ruebenacker, Matthias Samwald, Martijn van Iersel, Sarala Wimalaratne, K.W. Allen, Burk Braun, Michelle Whirl‐Carrillo, Kei-Hoi Cheung, Kam D. Dahlquist, Andrew Finney, Marc Gillespie, Elizabeth M. Glass, Li Gong, Robin Haw, Michael Honig, Olivier Hubaut, David W. Kane, Shiva Krupa, Martina Kutmon, Julie Mosty Leonard, Debbie Marks, David Merberg, Victoria Petri, Alexander R. Pico, Dean Ravenscroft, Liya Ren, Nigam H. Shah, Margot Sunshine, Rebecca Tang, Ryan Whaley, Stan Letovksy, Kenneth H. Buetow, Andrey Rzhetsky, Vincent Schächter, Bruno Sobral, Uḡur Doḡrusöz, Shannon K. McWeeney, Mirit I. Aladjem, Ewan Birney, Julio Collado‐Vides, Susumu Goto, Michael Hucka, Nicolas Le Novère, Natalia Maltsev, Akhilesh Pandey, Paul D. Thomas, Edgar Wingender, Peter D. Karp, Chris Sander, Gary D. Bader

    Vydáno 2010
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  16. 16
    Oncogenic Signaling Pathways in The Cancer Genome Atlas

    Oncogenic Signaling Pathways in The Cancer Genome Atlas Autor Francisco Sánchez-Vega, Marco Mina, Joshua Armenia, Walid K. Chatila, Augustin Luna, Konnor La, Sofia Dimitriadoy, David L. Liu, Havish S. Kantheti, Sadegh Saghafinia, Debyani Chakravarty, Foysal Daian, Qingsong Gao, Matthew H. Bailey, Wen-Wei Liang, Steven M. Foltz, Ilya Shmulevich, Li Ding, Zachary Heins, Angelica Ochoa, Benjamin Groß, Galen F. Gao, Hongxin Zhang, Ritika Kundra, Cyriac Kandoth, Istemi Bahceci, Leonard Dervishi, Uḡur Doḡrusöz, Wanding Zhou, Hui Shen, Peter W. Laird, Gregory P. Way, Casey S. Greene, Han Liang, Yonghong Xiao, Chen Wang, Antonio Iavarone, Alice H. Berger, Trever G. Bivona, Alexander J. Lazar, Gary D. Hammer, Thomas J. Giordano, Lawrence N. Kwong, Grant A. McArthur, Chenfei Huang, Aaron D. Tward, Mitchell J. Frederick, Frank McCormick, Matthew Meyerson, Eliezer M. Van Allen, Andrew D. Cherniack, Giovanni Ciriello, Chris Sander, Nikolaus Schultz, Rory Johnson, John A. Demchok, Ina Felau, Melpomeni Kasapi, Martin L. Ferguson, Carolyn M. Hutter, Heidi J. Sofia, Roy Tarnuzzer, Linghua Wang, Liming Yang, Jean C. Zenklusen, Jiashan Zhang, Sudha Chudamani, Jia Liu, Laxmi Lolla, Rashi Naresh, Todd Pihl, Qiang Sun, Yunhu Wan, Ye Wu, Juok Cho, Timothy Defreitas, Scott Frazer, Nils Gehlenborg, Gad Getz, David I. Heiman, Seungchan Kim, Michael S. Lawrence, Pei Lin, Thomas J. Giordano, Michael S. Noble, Gordon Saksena, Doug Voet, Hailei Zhang, Brady Bernard, Nyasha Chambwe, Varsha Dhankani, Theo Knijnenburg, Roger Kramer, Kalle Leinonen, Yuexin Liu, Michael Miller, Sheila M. Reynolds, Ilya Shmulevich, Vésteinn Thórsson, Wei Zhang

    Vydáno 2018
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