Ohcanbohtosat

Working with the DICOM and NIfTI Data Standards in<i>R</i> Dahkki Brandon Whitcher, Volker Schmid, Andrew Thornton

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H5MD: A structured, efficient, and portable file format for molecular data Dahkki Pierre de Buyl, Peter H. Colberg, Felix Höfling

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Presenting and exploring biological pathways with PathVisio Dahkki Martijn van Iersel, Thomas Kelder, Alexander R. Pico, Kristina Hanspers, Susan L. Coort, Bruce R. Conklin, Chris T. Evelo

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MDWiZ: A platform for the automated translation of molecular dynamics simulations Dahkki Victor H. Rusu, Vitor Horta, Bruno A. C. Horta, Roberto D. Lins, Riccardo Baron

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ESPript: analysis of multiple sequence alignments in PostScript. Dahkki Patrice Gouet, Emmanuel Courcelle, David I. Stuart, F Métoz

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Apical transportation associated with ProTaper® Universal F1, F2 and F3 instruments in curved canals prepared by undergraduate students Dahkki Manoel Brito-Júnior, André Luís Faria-e-Silva, Carla Cristina Camilo, Rodrigo Dantas Pereira, Neilor Mateus Antunes Braga, Manoel Damião Sousa‐Neto

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Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments Dahkki Ricardo H. Ramírez-González, Raoul J.P. Bonnal, Mario Cáccamo, Dan MacLean

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Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses Dahkki Olga Golosova, Ross Henderson, Yuriy Vaskin, Andrei Gabrielian, German Grekhov, Vijayaraj Nagarajan, Andrew J. Oler, Mariam Quiñones, Darrell E. Hurt, Mikhail Fursov, Yentram Huyen

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GlycomeDB – integration of open-access carbohydrate structure databases Dahkki René Ranzinger, Stephan Herget, Thomas C. Wetter, Claus‐Wilhelm von der Lieth

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DistMap: A Toolkit for Distributed Short Read Mapping on a Hadoop Cluster Dahkki Ram Vinay Pandey, Christian Schlötterer

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Data File Standard for Flow Cytometry, version FCS 3.1 Dahkki Josef Špidlen, Wayne Moore, David R. Parks, Michael Goldberg, Chris Bray, Pierre Bierre, Peter Gorombey, Bill Hyun, Mark Hubbard, Simon Lange, Ray Lefebvre, Robert C. Leif, David Novo, Leo J. Ostruszka, Adam Treister, James C. S. Wood, Robert F. Murphy, Mario Roederer, Damir Sudar, Robert Zigon, Ryan R. Brinkman

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Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data Dahkki Navdeep Jaitly, Anoop Mayampurath, Kyle Littlefield, Joshua Adkins, Gordon Anderson, Richard Smith

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BEAST 2: A Software Platform for Bayesian Evolutionary Analysis Dahkki Remco Bouckaert, Joseph Heled, Denise Kühnert, Tim Vaughan, Chieh‐Hsi Wu, Dong Xie, Marc A. Suchard, Andrew Rambaut, Alexei J. Drummond

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SNUFER: A software for localization and presentation of single nucleotide polymorphisms using a Clustal multiple sequence alignment output file Dahkki Marco A. B. Mansur, Giovana P. Cardozo, Elaine Vieira Santos, Mozart Marins

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Metadata matters: access to image data in the real world Dahkki Melissa Linkert, Curtis Rueden, Chris Allan, Jean‐Marie Burel, William J. Moore, Andrew Patterson, Brian Loranger, Josh Moore, Carlos Neves, Donald MacDonald, Aleksandra Tarkowska, Caitlin Sticco, Emma Hill, Mike Rossner, Kevin W. Eliceiri, Jason R. Swedlow

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eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape Dahkki Kengo Kinoshita, Yoichi Murakami, H. Nakamura

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CABS-flex: server for fast simulation of protein structure fluctuations Dahkki Michał H. Jamróz, Andrzej Koliński, Sebastian Kmiecik

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Bioinformatics for Next Generation Sequencing Data Dahkki Alberto Magi, Matteo Benelli, Alessia Gozzini, Francesca Girolami, Francesca Torricelli, Maria Luisa Brandi

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Medical Image File Formats Dahkki Michele Larobina, Loredana Murino

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Genotype harmonizer: automatic strand alignment and format conversion for genotype data integration Dahkki Patrick Deelen, Marc Jan Bonder, K van der Velde, Harm-Jan Westra, Erwin Winder, Dennis Hendriksen, Lude Franke, Morris A. Swertz

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