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Manifold Based Optimization for Single-Cell 3D Genome Reconstruction 由 Jonas Paulsen, Odin Gramstad, Philippe Collas

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ATAC‐seq: A Method for Assaying Chromatin Accessibility Genome‐Wide 由 Jason D. Buenrostro, Beijing Wu, Howard Y. Chang, William J. Greenleaf

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Mapping Cis- and Trans- Chromatin Interaction Networks Using Chromosome Conformation Capture (3C) 由 A.E. Miele, Job Dekker

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Single-cell chromatin accessibility reveals principles of regulatory variation 由 Jason D. Buenrostro, Beijing Wu, Ulrike Litzenburger, Dave Ruff, Michael L. Gonzales, M Snyder, Howard Y. Chang, William J. Greenleaf

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Chromatin Interaction Analysis Using Paired‐End Tag Sequencing 由 Melissa J. Fullwood, Yuyuan Han, Chia‐Lin Wei, Xiaoan Ruan, Yijun Ruan

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Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C 由 Tsung-Han S. Hsieh, Assaf Weiner, Bryan R. Lajoie, Job Dekker, Nir Friedman, Oliver J. Rando

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Chromosome domain architecture and dynamic organization of the fission yeast genome 由 Takeshi Mizuguchi, Jemima Barrowman, Shiv I. S. Grewal

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CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function 由 Ya Guo, Quan Xu, Daniele Canzio, Jia Shou, Jinhuan Li, David U. Gorkin, Inkyung Jung, Haiyang Wu, Yanan Zhai, Yuanxiao Tang, Yichao Lu, Yonghu Wu, Zhilian Jia, Wei Li, Michael Q. Zhang, Bing Ren, Adrian R. Krainer, Tom Maniatis, Qiang Wu

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A decade of 3C technologies: insights into nuclear organization 由 Elzo de Wit, Wouter de Laat

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Genome‐wide profiling of chromosome interactions in <i><scp>P</scp>lasmodium falciparum</i> characterizes nuclear architecture and reconfigurations associated with antigenic variat... 由 Jacob E. Lemieux, Sue Kyes, Thomas D. Otto, Avi Feller, Richard T. Eastman, Robert Pinches, Matthew Berriman, Xin‐zhuan Su, Chris Newbold

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The Hierarchy of the 3D Genome 由 Johan H. Gibcus, Job Dekker

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Advanced microscopy methods for visualizing chromatin structure 由 Melike Lakadamyali, Maria Pia Cosma

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Single-cell Hi-C reveals cell-to-cell variability in chromosome structure 由 Takashi Nagano, Yaniv Lubling, Tim J. Stevens, Stefan Schoenfelder, Eitan Yaffe, Wendy Dean, Ernest D. Laue, Amos Tanay, Peter Fraser

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Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding 由 Shin‐ichiro Takebayashi, Vishnu Dileep, Tyrone Ryba, Jonathan H. Dennis, David M. Gilbert

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Are genes switched on when they kiss? 由 Stephanie Fanucchi, Youtaro Shibayama, Musa M. Mhlanga

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Estrogen Induces Global Reorganization of Chromatin Structure in Human Breast Cancer Cells 由 Raphaël Mourad, Pei-Yin Hsu, Liran Juan, Changyu Shen, Prasad Koneru, Hai Lin, Yunlong Liu, Kenneth P. Nephew, Tim H.‐M. Huang, Lang Li

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From cells to chromatin: Capturing snapshots of genome organization with 5C technology 由 Maria Ferraiuolo, Amartya Sanyal, N. M. Naumova, Job Dekker, Josée Dostie

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Long-range regulatory interactions at the 4q25 atrial fibrillation risk locus involve PITX2c and ENPEP 由 Luis A. Aguirre, M. Eva Alonso, Claudio Badía-Careaga, Isabel Rollán, Cristina Arias, Ana Fernández‐Miñán, Elena López‐Jiménez, Amelia Aránega, José Luis Gómez-Skármeta, Diego Franco, Miguel Manzanares

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Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment 由 Jim R. Hughes, Nigel Roberts, Simon J. McGowan, Deborah Hay, Eleni Giannoulatou, Magnus Lynch, Marco De Gobbi, Stephen Taylor, Richard J. Gibbons, Douglas R. Higgs

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The sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modeling 由 Cheng Peng, Liang-Yu Fu, Pengfei Dong, Zhi-Luo Deng, Jianxin Li, Xiaotao Wang, Hongyu Zhang

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