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ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip od Zongli Xu, Liang Niu, Leping Li, Jack A. Taylor

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<scp>MicroRNA</scp> levels are modulated in <i><scp>A</scp>edes aegypti</i> after exposure to <scp>D</scp>engue‐2 od Corey L. Campbell, Tabitha A. Harrison, Ann M. Hess, G. D. Ebel

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Chromatin segmentation based on a probabilistic model for read counts explains a large portion of the epigenome od Alessandro Mammana, Ho‐Ryun Chung

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How to build personalized multi-omics comorbidity profiles od Mohammad Ali Moni, Píetro Lió

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Spatial normalization of array-CGH data od Pierre Neuvial, Philippe Hupé, Isabel Martínez Brito, Stéphane Liva, Élodie Manié, Caroline Brennetot, François Radvanyi, Alain Aurias, Emmanuel Barillot

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Detection of differentially methylated regions from whole-genome bisulfite sequencing data without replicates od Hao Wu, Tianlei Xu, Hao Feng, Li Chen, Ben Li, Bing Yao, Zhaohui Qin, Peng Jin, Karen N. Conneely

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Empirical array quality weights in the analysis of microarray data od Matthew E. Ritchie, Dileepa Diyagama, Jody Neilson, Ryan K. van Laar, Alexander Dobrovic, Andrew J. Holloway, Gordon K. Smyth

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The Analysis of Gene Expression Data: Methods and Software od Thomas Boyle

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A guide to genome‐wide association analysis and post‐analytic interrogation od Eric Reed, Sara Núñez, David Kulp, Jing Qian, Muredach P. Reilly, Andrea S. Foulkes

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Analysis of cell-based RNAi screens od Michael Boutros, Lı́gia P. Brás, Wolfgang Huber

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EMDomics: a robust and powerful method for the identification of genes differentially expressed between heterogeneous classes od Sheida Nabavi, Daniel Schmolze, Mayinuer Maitituoheti, Sadhika Malladi, Andrew H. Beck

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ToPASeq: an R package for topology-based pathway analysis of microarray and RNA-Seq data od Ivana Ihnatová, Eva Budínská

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diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data od Aaron T. L. Lun, Gordon K. Smyth

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quantro: a data-driven approach to guide the choice of an appropriate normalization method od Stephanie C. Hicks, Rafael A. Irizarry

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Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation od Michael I. Love, John B. Hogenesch, Rafael A. Irizarry

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Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips od Maria A. Stalteri, Andrew Harrison

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CompGO: an R package for comparing and visualizing Gene Ontology enrichment differences between DNA binding experiments od Ashley J. Waardenberg, Samuel D. Bassett, Romaric Bouveret, Richard P. Harvey

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INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments od Stefano de Pretis, Theresia Kreß, Marco J. Morelli, Giorgio Melloni, Laura Riva, Bruno Amati, Mattia Pelizzola

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DiffVar: a new method for detecting differential variability with application to methylation in cancer and aging od Belinda Phipson, Alicia Oshlack

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Exploring Massive, Genome Scale Datasets with the GenometriCorr Package od Alexander V. Favorov, Loris Mularoni, Leslie Cope, Yulia A. Medvedeva, Andrey A. Mironov, Vsevolod J. Makeev, Sarah J. Wheelan

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