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  1. 1
    Manifold Based Optimization for Single-Cell 3D Genome Reconstruction

    Manifold Based Optimization for Single-Cell 3D Genome Reconstruction by Jonas Paulsen, Odin Gramstad, Philippe Collas

    Published 2015
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  2. 2
    ATAC‐seq: A Method for Assaying Chromatin Accessibility Genome‐Wide

    ATAC‐seq: A Method for Assaying Chromatin Accessibility Genome‐Wide by Jason D. Buenrostro, Beijing Wu, Howard Y. Chang, William J. Greenleaf

    Published 2015
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  3. 3
    Mapping Cis- and Trans- Chromatin Interaction Networks Using Chromosome Conformation Capture (3C)

    Mapping Cis- and Trans- Chromatin Interaction Networks Using Chromosome Conformation Capture (3C) by A.E. Miele, Job Dekker

    Published 2008
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  4. 4
    Single-cell chromatin accessibility reveals principles of regulatory variation

    Single-cell chromatin accessibility reveals principles of regulatory variation by Jason D. Buenrostro, Beijing Wu, Ulrike Litzenburger, Dave Ruff, Michael L. Gonzales, M Snyder, Howard Y. Chang, William J. Greenleaf

    Published 2015
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  5. 5
    Chromatin Interaction Analysis Using Paired‐End Tag Sequencing

    Chromatin Interaction Analysis Using Paired‐End Tag Sequencing by Melissa J. Fullwood, Yuyuan Han, Chia‐Lin Wei, Xiaoan Ruan, Yijun Ruan

    Published 2010
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  6. 6
    Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C

    Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C by Tsung-Han S. Hsieh, Assaf Weiner, Bryan R. Lajoie, Job Dekker, Nir Friedman, Oliver J. Rando

    Published 2015
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  7. 7
    Chromosome domain architecture and dynamic organization of the fission yeast genome

    Chromosome domain architecture and dynamic organization of the fission yeast genome by Takeshi Mizuguchi, Jemima Barrowman, Shiv I. S. Grewal

    Published 2015
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  8. 8
    CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

    CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function by Ya Guo, Quan Xu, Daniele Canzio, Jia Shou, Jinhuan Li, David U. Gorkin, Inkyung Jung, Haiyang Wu, Yanan Zhai, Yuanxiao Tang, Yichao Lu, Yonghu Wu, Zhilian Jia, Wei Li, Michael Q. Zhang, Bing Ren, Adrian R. Krainer, Tom Maniatis, Qiang Wu

    Published 2015
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  9. 9
    A decade of 3C technologies: insights into nuclear organization

    A decade of 3C technologies: insights into nuclear organization by Elzo de Wit, Wouter de Laat

    Published 2012
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  10. 10
    Genome‐wide profiling of chromosome interactions in <i><scp>P</scp>lasmodium falciparum</i> characterizes nuclear architecture and reconfigurations associated with antigenic variation

    Genome‐wide profiling of chromosome interactions in <i><scp>P</scp>lasmodium falciparum</i> characterizes nuclear architecture and reconfigurations associated with antigenic variat... by Jacob E. Lemieux, Sue Kyes, Thomas D. Otto, Avi Feller, Richard T. Eastman, Robert Pinches, Matthew Berriman, Xin‐zhuan Su, Chris Newbold

    Published 2013
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  11. 11
    The Hierarchy of the 3D Genome

    The Hierarchy of the 3D Genome by Johan H. Gibcus, Job Dekker

    Published 2013
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  12. 12
    Advanced microscopy methods for visualizing chromatin structure

    Advanced microscopy methods for visualizing chromatin structure by Melike Lakadamyali, Maria Pia Cosma

    Published 2015
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  13. 13
    Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

    Single-cell Hi-C reveals cell-to-cell variability in chromosome structure by Takashi Nagano, Yaniv Lubling, Tim J. Stevens, Stefan Schoenfelder, Eitan Yaffe, Wendy Dean, Ernest D. Laue, Amos Tanay, Peter Fraser

    Published 2013
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  14. 14
    Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding

    Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding by Shin‐ichiro Takebayashi, Vishnu Dileep, Tyrone Ryba, Jonathan H. Dennis, David M. Gilbert

    Published 2012
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  15. 15
    Are genes switched on when they kiss?

    Are genes switched on when they kiss? by Stephanie Fanucchi, Youtaro Shibayama, Musa M. Mhlanga

    Published 2014
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  16. 16
    Estrogen Induces Global Reorganization of Chromatin Structure in Human Breast Cancer Cells

    Estrogen Induces Global Reorganization of Chromatin Structure in Human Breast Cancer Cells by Raphaël Mourad, Pei-Yin Hsu, Liran Juan, Changyu Shen, Prasad Koneru, Hai Lin, Yunlong Liu, Kenneth P. Nephew, Tim H.‐M. Huang, Lang Li

    Published 2014
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  17. 17
    From cells to chromatin: Capturing snapshots of genome organization with 5C technology

    From cells to chromatin: Capturing snapshots of genome organization with 5C technology by Maria Ferraiuolo, Amartya Sanyal, N. M. Naumova, Job Dekker, Josée Dostie

    Published 2012
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  18. 18
    Long-range regulatory interactions at the 4q25 atrial fibrillation risk locus involve PITX2c and ENPEP

    Long-range regulatory interactions at the 4q25 atrial fibrillation risk locus involve PITX2c and ENPEP by Luis A. Aguirre, M. Eva Alonso, Claudio Badía-Careaga, Isabel Rollán, Cristina Arias, Ana Fernández‐Miñán, Elena López‐Jiménez, Amelia Aránega, José Luis Gómez-Skármeta, Diego Franco, Miguel Manzanares

    Published 2015
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  19. 19
    Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment

    Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment by Jim R. Hughes, Nigel Roberts, Simon J. McGowan, Deborah Hay, Eleni Giannoulatou, Magnus Lynch, Marco De Gobbi, Stephen Taylor, Richard J. Gibbons, Douglas R. Higgs

    Published 2014
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  20. 20
    The sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modeling

    The sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modeling by Cheng Peng, Liang-Yu Fu, Pengfei Dong, Zhi-Luo Deng, Jianxin Li, Xiaotao Wang, Hongyu Zhang

    Published 2013
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