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ATAC‐seq: A Method for Assaying Chromatin Accessibility Genome‐Wide 由 Jason D. Buenrostro, Beijing Wu, Howard Y. Chang, William J. Greenleaf

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Context-specific role of SOX9 in NF-Y mediated gene regulation in colorectal cancer cells 由 Zhongcheng Shi, Chi-I Chiang, Paul Labhart, Yanling Zhao, Jianhua Yang, Toni-Ann Mistretta, Susan Henning, Sankar N. Maity, Yuko Mori–Akiyama

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Characterization of Nucleophosmin (B23) as a Myc Target by Scanning Chromatin Immunoprecipitation 由 Karen Zeller, Timothy J. Haggerty, John F. Barrett, Qingbin Guo, Diane R. Wonsey, Chi V. Dang

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SRY, like HMG1, recognizes sharp angles in DNA. 由 Sérgio Ferrari, Vincent R. Harley, Andrea Pontiggia, P.N. Goodfellow, Robin Lovell‐Badge, Marco E. Bianchi

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Chromatin remodeling in the aging genome of Drosophila 由 Jason G. Wood, Sara Hillenmeyer, Charles E. Lawrence, Cheng-Yi Chang, Suzanne Hosier, Will Lightfoot, Eric Mukherjee, Nan Jiang, Christoph Schorl, Alexander S. Brodsky, Nicola Neretti, Stephen L. Helfand

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Active promoters give rise to false positive ‘Phantom Peaks’ in ChIP-seq experiments 由 Dhawal Jain, Sandro Baldi, Angelika Zabel, Tobias Straub, Peter B. Becker

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Chromatin Interaction Analysis Using Paired‐End Tag Sequencing 由 Melissa J. Fullwood, Yuyuan Han, Chia‐Lin Wei, Xiaoan Ruan, Yijun Ruan

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Calibrating ChIP-Seq with Nucleosomal Internal Standards to Measure Histone Modification Density Genome Wide 由 Adrian T. Grzybowski, Zhonglei Chen, Alexander J. Ruthenburg

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Structure and function of active chromatin and DNase I hypersensitive sites 由 Peter N. Cockerill

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Protein–DNA binding in high-resolution 由 Shaun Mahony, B. Franklin Pugh

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High mobility group protein-mediated transcription requires DNA damage marker γ-H2AX 由 Indrabahadur Singh, Nihan Öztürk, Julio Cordero, Aditi Mehta, Diya Hasan, Claudia Cosentino, Carlos Sebastián, Marcus Krüger, Mario Looso, Gianni Carraro, Savério Bellusci, Werner Seeger, Thomas Braun, Raúl Mostoslavsky, Guillermo Barreto

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ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors 由 Christian Schmidl, André F. Rendeiro, Nathan C. Sheffield, Christoph Bock

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The physical size of transcription factors is key to transcriptional regulation in chromatin domains 由 Kazuhiro Maeshima, Kazunari Kaizu, Sachiko Tamura, Tadasu Nozaki, Tetsuro Kokubo, Koichi Takahashi

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Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages 由 Xun Lan, Heather Witt, Koichi R. Katsumura, Zhenqing Ye, Qianben Wang, Emery H. Bresnick, Peggy Farnham, Victor X. Jin

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High-Resolution Genome-wide Mapping of the Primary Structure of Chromatin 由 Zhenhai Zhang, B. Franklin Pugh

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High-resolution genome-wide mapping of HIF-binding sites by ChIP-seq 由 Johannes Schödel, Spyros Oikonomopoulos, Jiannis Ragoussis, Christopher W. Pugh, Peter J. Ratcliffe, David R. Mole

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Genome-wide analysis of the relationships between DNaseI HS, histone modifications and gene expression reveals distinct modes of chromatin domains 由 Wenjie Shu, Hebing Chen, Xiaochen Bo, Shengqi Wang

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A DNA unwinding factor involved in DNA replication in cell-free extracts of Xenopus eggs 由 Koji Okuhara, Kunihiro Ohta, Hidetaka Seo, Masaki Shioda, Takatomi Yamada, Yasuhiro Tanaka, Naoshi Dohmae, Yousuke Seyama, Takehiko Shibata, Hiromu Murofushi

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i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly 由 Hana Imrichová, Gert Hulselmans, Zeynep Kalender Atak, Delphine Potier, Stein Aerts

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Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes 由 Scott J Westenberger, Long Cui, Neekesh V. Dharia, Elizabeth A. Winzeler, Liwang Cui

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