著者検索結果

1

One Thousand Two Hundred Ninety Nuclear Genes from a Genome-Wide Survey Support Lungfishes as the Sister Group of Tetrapods 著者: Dan Liang, Xing‐Xing Shen, Peng Zhang

出版事項 2013

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Artigo

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2

A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference 著者: Xing‐Xing Shen, Leonidas Salichos, Antonis Rokas

出版事項 2016

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Artigo

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3

Multiple Genome Alignments Facilitate Development of NPCL Markers: A Case Study of Tetrapod Phylogeny Focusing on the Position of Turtles 著者: Xing‐Xing Shen, Dan Liang, Jianping Wen, Ping Zhang

出版事項 2011

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Artigo

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4

Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets 著者: Xiaofan Zhou, Xing‐Xing Shen, Chris Todd Hittinger, Antonis Rokas

出版事項 2017

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Artigo

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5

A robust phylogenomic timetree for biotechnologically and medically important fungi in the genera Aspergillus and Penicillium 著者: Jacob L. Steenwyk, Xing‐Xing Shen, Abigail Lind, Gustavo H. Goldman, Antonis Rokas

出版事項 2018

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Pré-impressão

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6

A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium 著者: Jacob L. Steenwyk, Xing‐Xing Shen, Abigail Lind, Gustavo H. Goldman, Antonis Rokas

出版事項 2019

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Artigo

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7

ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference 著者: Jacob L. Steenwyk, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas

出版事項 2020

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Artigo

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8

An investigation of irreproducibility in maximum likelihood phylogenetic inference 著者: Xing‐Xing Shen, Yuanning Li, Chris Todd Hittinger, Xue‐Xin Chen, Antonis Rokas

出版事項 2020

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Artigo

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9

Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data 著者: Xing‐Xing Shen, Xiaofan Zhou, Jacek Kominek, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas

出版事項 2016

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Artigo

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10

OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees 著者: Jacob L. Steenwyk, Dayna Goltz, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas

出版事項 2022

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Artigo

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11

PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data 著者: Jacob L. Steenwyk, Thomas J. Buida, Abigail L. LaBella, Yuanning Li, Xing‐Xing Shen, Antonis Rokas

出版事項 2021

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Artigo

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12

Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts 著者: David Krause, Jacek Kominek, Dana A. Opulente, Xing‐Xing Shen, Xiaofan Zhou, Quinn K. Langdon, Jeremy DeVirgilio, Amanda Beth Hulfachor, Cletus P. Kurtzman, Antonis Rokas, Chris Todd Hittinger

出版事項 2018

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Artigo

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13

Saccharomycotina yeasts defy long-standing macroecological patterns 著者: Kyle T. David, Marie‐Claire Harrison, Dana A. Opulente, Abigail L. LaBella, John F. Wolters, Xiaofan Zhou, Xing‐Xing Shen, Marizeth Groenewald, Matt Pennell, Chris Todd Hittinger, Antonis Rokas

出版事項 2024

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Artigo

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14

Eukaryotic Acquisition of a Bacterial Operon 著者: Jacek Kominek, Drew T. Doering, Dana A. Opulente, Xing‐Xing Shen, Xiaofan Zhou, Jeremy DeVirgilio, Amanda Beth Hulfachor, Marizeth Groenewald, Mcsean A. Mcgee, Steven D. Karlen, Cletus P. Kurtzman, Antonis Rokas, Chris Todd Hittinger

出版事項 2019

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Artigo

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15

Evolutionary instability of CUG-Leu in the genetic code of budding yeasts 著者: Tadeusz Krassowski, Aisling Y. Coughlan, Xing‐Xing Shen, Xiaofan Zhou, Jacek Kominek, Dana A. Opulente, Robert Riley, Igor V. Grigoriev, Nikunj Maheshwari, Denis C. Shields, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas, Kenneth H. Wolfe

出版事項 2018

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Artigo

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16

Convergent expansions of keystone gene families drive metabolic innovation in Saccharomycotina yeasts 著者: Kyle T. David, Joshua G. Schraiber, Johnathan G. Crandall, Abigail L. LaBella, Dana A. Opulente, Marie‐Claire Harrison, John F. Wolters, Xiaofan Zhou, Xing‐Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Matthew W. Pennell, Antonis Rokas

出版事項 2025

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Artigo

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17

PhyloFisher: A phylogenomic package for resolving eukaryotic relationships 著者: Alexander K. Tice, David Žihala, Tomáš Pánek, Robert E. Jones, Eric D. Salomaki, Serafim Nenarokov, Fabien Burki, Marek Eliáš, Laura Eme, Andrew J. Roger, Antonis Rokas, Xing‐Xing Shen, Jürgen F. H. Strassert, Martin Kolísko, Matthew W. Brown

出版事項 2021

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Artigo

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18

Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts 著者: Jacob L. Steenwyk, Dana A. Opulente, Jacek Kominek, Xing‐Xing Shen, Xiaofan Zhou, Abigail L. LaBella, Noah P. Bradley, Brandt F. Eichman, Neža Čadež, Diego Libkind, Jeremy DeVirgilio, Amanda Beth Hulfachor, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas

出版事項 2019

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Artigo

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19

Prickly waterlily and rigid hornwort genomes shed light on early angiosperm evolution 著者: Yongzhi Yang, Pengchuan Sun, Leke Lv, Donglei Wang, Dafu Ru, Ying Li, Tao Ma, Lei Zhang, Xing‐Xing Shen, Fanbo Meng, Beibei Jiao, Lanxing Shan, Man Liu, Qingfeng Wang, Zhiji Qin, Zhenxiang Xi, Xiyin Wang, Charles C. Davis, Jianquan Liu

出版事項 2020

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Artigo

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20

Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum 著者: Xing‐Xing Shen, Dana A. Opulente, Jacek Kominek, Xiaofan Zhou, Jacob L. Steenwyk, Kelly V. Buh, Max A. B. Haase, Jennifer H. Wisecaver, Mingshuang Wang, Drew T. Doering, James T. Boudouris, Rachel M. Schneider, Quinn K. Langdon, Moriya Ohkuma, Rikiya Endoh, Masako Takashima, Ri‐Ichiroh Manabe, Neža Čadež, Diego Libkind, Carlos A. Rosa, Jeremy DeVirgilio, Amanda Beth Hulfachor, Marizeth Groenewald, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas

出版事項 2018

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Artigo

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One Thousand Two Hundred Ninety Nuclear Genes from a Genome-Wide Survey Support Lungfishes as the Sister Group of Tetrapods 著者: Dan Liang, Xing‐Xing Shen, Peng Zhang

A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference 著者: Xing‐Xing Shen, Leonidas Salichos, Antonis Rokas

Multiple Genome Alignments Facilitate Development of NPCL Markers: A Case Study of Tetrapod Phylogeny Focusing on the Position of Turtles 著者: Xing‐Xing Shen, Dan Liang, Jianping Wen, Ping Zhang

Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets 著者: Xiaofan Zhou, Xing‐Xing Shen, Chris Todd Hittinger, Antonis Rokas

A robust phylogenomic timetree for biotechnologically and medically important fungi in the genera <i>Aspergillus</i> and <i>Penicillium</i> 著者: Jacob L. Steenwyk, Xing‐Xing Shen, Abigail Lind, Gustavo H. Goldman, Antonis Rokas

A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera <i>Aspergillus</i> and <i>Penicillium</i> 著者: Jacob L. Steenwyk, Xing‐Xing Shen, Abigail Lind, Gustavo H. Goldman, Antonis Rokas

ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference 著者: Jacob L. Steenwyk, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas

An investigation of irreproducibility in maximum likelihood phylogenetic inference 著者: Xing‐Xing Shen, Yuanning Li, Chris Todd Hittinger, Xue‐Xin Chen, Antonis Rokas

Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data 著者: Xing‐Xing Shen, Xiaofan Zhou, Jacek Kominek, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas

OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees 著者: Jacob L. Steenwyk, Dayna Goltz, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas

PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data 著者: Jacob L. Steenwyk, Thomas J. Buida, Abigail L. LaBella, Yuanning Li, Xing‐Xing Shen, Antonis Rokas

Saccharomycotina yeasts defy long-standing macroecological patterns 著者: Kyle T. David, Marie‐Claire Harrison, Dana A. Opulente, Abigail L. LaBella, John F. Wolters, Xiaofan Zhou, Xing‐Xing Shen, Marizeth Groenewald, Matt Pennell, Chris Todd Hittinger, Antonis Rokas

Eukaryotic Acquisition of a Bacterial Operon 著者: Jacek Kominek, Drew T. Doering, Dana A. Opulente, Xing‐Xing Shen, Xiaofan Zhou, Jeremy DeVirgilio, Amanda Beth Hulfachor, Marizeth Groenewald, Mcsean A. Mcgee, Steven D. Karlen, Cletus P. Kurtzman, Antonis Rokas, Chris Todd Hittinger

検索結果 - Xing‐Xing Shen

One Thousand Two Hundred Ninety Nuclear Genes from a Genome-Wide Survey Support Lungfishes as the Sister Group of Tetrapods 著者: Dan Liang, Xing‐Xing Shen, Peng Zhang

A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference 著者: Xing‐Xing Shen, Leonidas Salichos, Antonis Rokas

Multiple Genome Alignments Facilitate Development of NPCL Markers: A Case Study of Tetrapod Phylogeny Focusing on the Position of Turtles 著者: Xing‐Xing Shen, Dan Liang, Jianping Wen, Ping Zhang

Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets 著者: Xiaofan Zhou, Xing‐Xing Shen, Chris Todd Hittinger, Antonis Rokas

A robust phylogenomic timetree for biotechnologically and medically important fungi in the genera <i>Aspergillus</i> and <i>Penicillium</i> 著者: Jacob L. Steenwyk, Xing‐Xing Shen, Abigail Lind, Gustavo H. Goldman, Antonis Rokas

A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera <i>Aspergillus</i> and <i>Penicillium</i> 著者: Jacob L. Steenwyk, Xing‐Xing Shen, Abigail Lind, Gustavo H. Goldman, Antonis Rokas

ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference 著者: Jacob L. Steenwyk, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas

An investigation of irreproducibility in maximum likelihood phylogenetic inference 著者: Xing‐Xing Shen, Yuanning Li, Chris Todd Hittinger, Xue‐Xin Chen, Antonis Rokas

Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data 著者: Xing‐Xing Shen, Xiaofan Zhou, Jacek Kominek, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas

OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees 著者: Jacob L. Steenwyk, Dayna Goltz, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas

PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data 著者: Jacob L. Steenwyk, Thomas J. Buida, Abigail L. LaBella, Yuanning Li, Xing‐Xing Shen, Antonis Rokas

Saccharomycotina yeasts defy long-standing macroecological patterns 著者: Kyle T. David, Marie‐Claire Harrison, Dana A. Opulente, Abigail L. LaBella, John F. Wolters, Xiaofan Zhou, Xing‐Xing Shen, Marizeth Groenewald, Matt Pennell, Chris Todd Hittinger, Antonis Rokas

Eukaryotic Acquisition of a Bacterial Operon 著者: Jacek Kominek, Drew T. Doering, Dana A. Opulente, Xing‐Xing Shen, Xiaofan Zhou, Jeremy DeVirgilio, Amanda Beth Hulfachor, Marizeth Groenewald, Mcsean A. Mcgee, Steven D. Karlen, Cletus P. Kurtzman, Antonis Rokas, Chris Todd Hittinger

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