Search Results - Timothy D. Read

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  1. 1
    Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae

    Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae by Timothy D. Read

    Published 2003
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  2. 2
    Characterizing the genetic basis of bacterial phenotypes using genome-wide association studies: a new direction for bacteriology

    Characterizing the genetic basis of bacterial phenotypes using genome-wide association studies: a new direction for bacteriology by Timothy D. Read, Ruth C. Massey

    Published 2014
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  3. 3
    <i>Staphylococcus aureus</i> viewed from the perspective of 40,000+ genomes

    <i>Staphylococcus aureus</i> viewed from the perspective of 40,000+ genomes by Robert A. Petit, Timothy D. Read

    Published 2018
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  4. 4
    Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes

    Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes by Robert A. Petit, Timothy D. Read

    Published 2020
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  5. 5
    Scaffolding and validation of bacterial genome assemblies using optical restriction maps

    Scaffolding and validation of bacterial genome assemblies using optical restriction maps by Niranjan Nagarajan, Timothy D. Read, Mihai Pop

    Published 2008
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  6. 6
    Genome-Based Prediction of Bacterial Antibiotic Resistance

    Genome-Based Prediction of Bacterial Antibiotic Resistance by Michelle Su, Sarah W. Satola, Timothy D. Read

    Published 2018
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  7. 7
    DIYA: a bacterial annotation pipeline for any genomics lab

    DIYA: a bacterial annotation pipeline for any genomics lab by Andrew C. Stewart, Brian I. Osborne, Timothy D. Read

    Published 2009
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  8. 8
    Incomplete immunity in a natural animal-microbiota interaction selects for higher pathogen virulence

    Incomplete immunity in a natural animal-microbiota interaction selects for higher pathogen virulence by Kim L. Hoang, Timothy D. Read, Kayla C. King

    Published 2024
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  9. 9
    The role of hypermutation and collateral sensitivity in antimicrobial resistance diversity of <i>Pseudomonas aeruginosa</i> populations in cystic fibrosis lung infection

    The role of hypermutation and collateral sensitivity in antimicrobial resistance diversity of <i>Pseudomonas aeruginosa</i> populations in cystic fibrosis lung infection by Jelly Vanderwoude, Sheyda Azimi, Timothy D. Read, Stephen P. Diggle

    Published 2024
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  10. 10
    Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

    Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample by Chengwei Luo, Despina Tsementzi, Nikos C. Kyrpides, Timothy D. Read, Konstantinos T. Konstantinidis

    Published 2012
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  11. 11
    A Mutation in the PP2C Phosphatase Gene in a Staphylococcus aureus USA300 Clinical Isolate with Reduced Susceptibility to Vancomycin and Daptomycin

    A Mutation in the PP2C Phosphatase Gene in a Staphylococcus aureus USA300 Clinical Isolate with Reduced Susceptibility to Vancomycin and Daptomycin by Karla D. Passalacqua, Sarah W. Satola, Emily K. Crispell, Timothy D. Read

    Published 2012
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  12. 12
    Interplay of recombination and selection in the genomes of Chlamydia trachomatis

    Interplay of recombination and selection in the genomes of Chlamydia trachomatis by Sandeep J. Joseph, Xavier Didelot, Khanjan Gandhi, Deborah Dean, Timothy D. Read

    Published 2011
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  13. 13
    Comparative Analysis of Chlamydia psittaci Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Host Range

    Comparative Analysis of Chlamydia psittaci Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Host Range by Timothy D. Read, Sandeep J. Joseph, Xavier Didelot, Brooke Liang, Lisa Patel, Deborah Dean

    Published 2013
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  14. 14
    Genotypic and Phenotypic Diversity of Staphylococcus aureus Isolates from Cystic Fibrosis Patient Lung Infections and Their Interactions with Pseudomonas aeruginosa

    Genotypic and Phenotypic Diversity of Staphylococcus aureus Isolates from Cystic Fibrosis Patient Lung Infections and Their Interactions with Pseudomonas aeruginosa by Eryn E. Bernardy, Robert A. Petit, Vishnu Raghuram, Ashley M. Alexander, Timothy D. Read, Joanna B. Goldberg

    Published 2020
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  15. 15
    Species-Wide Phylogenomics of the Staphylococcus aureus <i>Agr</i> Operon Revealed Convergent Evolution of Frameshift Mutations

    Species-Wide Phylogenomics of the Staphylococcus aureus <i>Agr</i> Operon Revealed Convergent Evolution of Frameshift Mutations by Vishnu Raghuram, Ashley M. Alexander, Hui Qi Loo, Robert A. Petit, Joanna B. Goldberg, Timothy D. Read

    Published 2022
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  16. 16
    Population Genomics of Chlamydia trachomatis: Insights on Drift, Selection, Recombination, and Population Structure

    Population Genomics of Chlamydia trachomatis: Insights on Drift, Selection, Recombination, and Population Structure by Sandeep J. Joseph, Xavier Didelot, James Rothschild, Henry J.C. de Vries, Servaas A. Morré, Timothy D. Read, Deborah Dean

    Published 2012
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  17. 17
    Transmission and Microevolution of USA300 MRSA in U.S. Households: Evidence from Whole-Genome Sequencing

    Transmission and Microevolution of USA300 MRSA in U.S. Households: Evidence from Whole-Genome Sequencing by Tauqeer Alam, Timothy D. Read, Robert A. Petit, Susan Boyle‐Vavra, Loren G. Miller, Samantha J. Eells, Robert S. Daum, Michael David

    Published 2015
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  18. 18
    Protocol for the Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort Study

    Protocol for the Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort Study by Elizabeth J. Corwin, Carol J. Hogue, Bradley D. Pearce, Cherie C. Hill, Timothy D. Read, Jennifer G. Mullé, Anne L. Dunlop

    Published 2017
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  19. 19
    Hypervirulent Chlamydia trachomatis Clinical Strain Is a Recombinant between Lymphogranuloma Venereum (L <sub>2</sub> ) and D Lineages

    Hypervirulent Chlamydia trachomatis Clinical Strain Is a Recombinant between Lymphogranuloma Venereum (L <sub>2</sub> ) and D Lineages by Naraporn Somboonna, Raymond Wan, David M. Ojcius, Matthew A. Pettengill, Sandeep J. Joseph, Alexander Chang, Ray T. Hsu, Timothy D. Read, Deborah Dean

    Published 2011
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  20. 20
    IsdB-dependent Hemoglobin Binding Is Required for Acquisition of Heme by Staphylococcus aureus

    IsdB-dependent Hemoglobin Binding Is Required for Acquisition of Heme by Staphylococcus aureus by Gleb Pishchany, Jessica R. Sheldon, Claire F. Dickson, Md Tauqeer Alam, Timothy D. Read, David A. Gell, David E. Heinrichs, Eric P. Skaar

    Published 2013
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