Search Results - Thomas Sicheritz‐Pontén

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  1. 1
    A phylogenomic approach to microbial evolution

    A phylogenomic approach to microbial evolution by Thomas Sicheritz‐Pontén

    Published 2001
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  2. 2
    Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes

    Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes by Cecilia Alsmark, Peter G. Foster, Thomas Sicheritz‐Pontén, Sirintra Nakjang, T. Martin Embley, Robert P. Hirt

    Published 2013
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  3. 3
    Rapid discovery of novel prophages using biological feature engineering and machine learning

    Rapid discovery of novel prophages using biological feature engineering and machine learning by Kimmo Sirén, Andrew Millard, Bent Petersen, M. Thomas P. Gilbert, Martha R. J. Clokie, Thomas Sicheritz‐Pontén

    Published 2021
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  4. 4
    Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples

    Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples by Henrik Hasman, Dhany Saputra, Thomas Sicheritz‐Pontén, Ole Lund, Christina Aaby Svendsen, Niels Frimodt‐Møller, Frank M. Aarestrup

    Published 2013
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  5. 5
    Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis

    Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis by Agata Wesolowska‐Andersen, Martin Iain Bahl, Vera Carvalho, Karsten Kristiansen, Thomas Sicheritz‐Pontén, Ramneek Gupta, Tine Rask Licht

    Published 2014
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  6. 6
    Trichomonas vaginalis vast BspA-like gene family: evidence for functional diversity from structural organisation and transcriptomics

    Trichomonas vaginalis vast BspA-like gene family: evidence for functional diversity from structural organisation and transcriptomics by Christophe Noël, Nicia Diaz, Thomas Sicheritz‐Pontén, Lucie Šafaříková, Jan Tachezy, Petrus Tang, Pier Luigi Fiori, Robert P. Hirt

    Published 2010
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  7. 7
    MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

    MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads by Thomas Nordahl Petersen, Oksana Lukjančenko, Martin Christen Frølund Thomsen, Maria Maddalena Sperotto, Ole Lund, Frank M. Aarestrup, Thomas Sicheritz‐Pontén

    Published 2017
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  8. 8
    Benchmarking of Methods for Genomic Taxonomy

    Benchmarking of Methods for Genomic Taxonomy by Mette Voldby Larsen, Salvatore Cosentino, Oksana Lukjančenko, Dhany Saputra, Simon Rasmussen, Henrik Hasman, Thomas Sicheritz‐Pontén, Frank M. Aarestrup, David W. Ussery, Ole Lund

    Published 2014
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  9. 9
    Single‐tube library preparation for degraded <scp>DNA</scp>

    Single‐tube library preparation for degraded <scp>DNA</scp> by Christian Carøe, Shyam Gopalakrishnan, Lasse Vinner, Sarah S. T. Mak, Mikkel‐Holger S. Sinding, José Alfredo Samaniego Castruita, Nathan Wales, Thomas Sicheritz‐Pontén, M. Thomas P. Gilbert

    Published 2017
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  10. 10
    Whole-Genome Pyrosequencing of an Epidemic Multidrug-Resistant <i>Acinetobacter baumannii</i> Strain Belonging to the European Clone II Group

    Whole-Genome Pyrosequencing of an Epidemic Multidrug-Resistant <i>Acinetobacter baumannii</i> Strain Belonging to the European Clone II Group by Michele Iacono, Laura Villa, D. Fortini, Roberta Bordoni, Francesco Imperi, Raoul J.P. Bonnal, Thomas Sicheritz‐Pontén, Gianluca De Bellis, Paolo Visca, Antonio Cassone, Alessandra Carattoli

    Published 2008
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  11. 11
    Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

    Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria by Mette Voldby Larsen, Salvatore Cosentino, Simon Rasmussen, Carsten Friis, Henrik Hasman, Rasmus L. Marvig, Lars Jelsbak, Thomas Sicheritz‐Pontén, David W. Ussery, Frank M. Aarestrup, Ole Lund

    Published 2012
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  12. 12
    Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance

    Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance by Thomas Nordahl Petersen, Simon Rasmussen, Henrik Hasman, Christian Carøe, Jacob Bælum, Anna Charlotte Schultz, Lasse Bergmark, Christina Aaby Svendsen, Ole Lund, Thomas Sicheritz‐Pontén, Frank M. Aarestrup

    Published 2015
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  13. 13
    The genome sequence of Rickettsia prowazekii and the origin of mitochondria

    The genome sequence of Rickettsia prowazekii and the origin of mitochondria by Siv G. E. Andersson, Alireza Zomorodipour, Jan O. Andersson, Thomas Sicheritz‐Pontén, U. Cecilia M. Alsmark, Raf M. Podowski, A. Kristina Näslund, Ann-Sofie Eriksson, Herbert H. Winkler, C. G. Kurland

    Published 1998
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  14. 14
    Multi-omic detection of<i>Mycobacterium leprae</i>in archaeological human dental calculus

    Multi-omic detection of<i>Mycobacterium leprae</i>in archaeological human dental calculus by Anna K. Fotakis, Sean Dexter Denham, Meaghan Mackie, Miren Iraeta-Orbegozo, Dorothea Mylopotamitaki, Shyam Gopalakrishnan, Thomas Sicheritz‐Pontén, Jesper V. Olsen, Enrico Cappellini, Guojie Zhang, Axel Christophersen, M. Thomas P. Gilbert, Åshild J. Vågene‬

    Published 2020
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  15. 15
    The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics

    The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics by Shyam Gopalakrishnan, José Alfredo Samaniego Castruita, Mikkel‐Holger S. Sinding, Lukas F. K. Kuderna, Jannikke Räikkönen, Bent Petersen, Thomas Sicheritz‐Pontén, Greger Larson, Ludovic Orlando, Tomàs Marquès‐Bonet, Anders J. Hansen, Love Dalén, M. Thomas P. Gilbert

    Published 2017
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  16. 16
    Ancient proteins resolve controversy over the identity of<i>Genyornis</i>eggshell

    Ancient proteins resolve controversy over the identity of<i>Genyornis</i>eggshell by Beatrice Demarchi, Josefin Stiller, Alicia Grealy, Meaghan Mackie, Yuan Deng, M. Thomas P. Gilbert, Julia A. Clarke, Lucas J. Legendre, Rosa Boano, Thomas Sicheritz‐Pontén, John Magee, Guojie Zhang, Michael Bunce, Matthew J. Collins, Gifford H. Miller

    Published 2022
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  17. 17
    Bacterial natural transformation by highly fragmented and damaged DNA

    Bacterial natural transformation by highly fragmented and damaged DNA by Søren Overballe‐Petersen, Klaus Harms, Ludovic Orlando, J. Víctor Moreno-Mayar, Simon Rasmussen, Tais W. Dahl, Minik T. Rosing, Anthony M. Poole, Thomas Sicheritz‐Pontén, Søren Brunak, Sabrina Inselmann, Johann de Vries, Wilfried Wackernagel, Oliver G. Pybus, Rasmus Nielsen, Pål J. Johnsen, Kaare Magne Nielsen, Eske Willerslev

    Published 2013
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  18. 18
    Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (<i>Ceratotherium simum</i>)

    Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (<i>Ceratotherium simum</i>) by Fátima Sánchez Barreiro, Shyam Gopalakrishnan, Jazmín Ramos‐Madrigal, Michael V. Westbury, Marc de Manuel, Ashot Margaryan, Marta Maria Ciucani, Filipe Garrett Vieira, Yannis Patramanis, Daniela C. Kalthoff, Zena Timmons, Thomas Sicheritz‐Pontén, Love Dalén, Oliver A. Ryder, Guojie Zhang, Tomàs Marquès‐Bonet, Yoshan Moodley, M. Thomas P. Gilbert

    Published 2021
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  19. 19
    Linear Motif Atlas for Phosphorylation-Dependent Signaling

    Linear Motif Atlas for Phosphorylation-Dependent Signaling by Martin L. Miller, Lars Juhl Jensen, Francesca Diella, Claus Jørgensen, Michele Tinti, Lei Li, Marilyn S. Hsiung, Sirlester A. Parker, Jennifer Bordeaux, Thomas Sicheritz‐Pontén, Marina Olhovsky, Adrian Pasculescu, Jes Alexander, Stefan Knapp, Nikolaj Blom, Peer Bork, Shawn Li, Gianni Cesareni, Tony Pawson, Benjamin E. Turk, Michael B. Yaffe, Søren Brunak, Rune Linding

    Published 2008
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  20. 20
    Speciation with gene flow in equids despite extensive chromosomal plasticity

    Speciation with gene flow in equids despite extensive chromosomal plasticity by Hákon Jónsson, Mikkel Schubert, Andaine Seguin‐Orlando, Aurélien Ginolhac, Lillian Petersen, Matteo Fumagalli, Anders Albrechtsen, Bent Petersen, Thorfinn Sand Korneliussen, Julia T. Vilstrup, T.L. Lear, Jennifer Leigh Myka, J. Lundquist, Donald C. Miller, Ahmed Alfarhan, Saleh A. Alquraishi, Khaled A. S. Al‐Rasheid, Julia Stagegaard, G Strauss, Mads F. Bertelsen, Thomas Sicheritz‐Pontén, Douglas F. Antczak, Ernest Bailey, Rasmus Nielsen, Eske Willerslev, Ludovic Orlando

    Published 2014
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