Search Results - Sergios‐Orestis Kolokotronis

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  1. 1
    The Real maccoyii: Identifying Tuna Sushi with DNA Barcodes – Contrasting Characteristic Attributes and Genetic Distances

    The Real maccoyii: Identifying Tuna Sushi with DNA Barcodes – Contrasting Characteristic Attributes and Genetic Distances by Jacob H. Lowenstein, George Amato, Sergios‐Orestis Kolokotronis

    Published 2009
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  2. 2
    Elevated substitution rates estimated from ancient DNA sequences

    Elevated substitution rates estimated from ancient DNA sequences by Simon Y. W. Ho, Sergios‐Orestis Kolokotronis, Robin G. Allaby

    Published 2007
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  3. 3
    To beat or not to beat a tick: comparison of DNA extraction methods for ticks (<i>Ixodes scapularis</i>)

    To beat or not to beat a tick: comparison of DNA extraction methods for ticks (<i>Ixodes scapularis</i>) by Alyssa Ammazzalorso, Christine P. Zolnik, Thomas J. Daniels, Sergios‐Orestis Kolokotronis

    Published 2015
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  4. 4
    Outer surface protein polymorphisms linked to host‐spirochete association in Lyme borreliae

    Outer surface protein polymorphisms linked to host‐spirochete association in Lyme borreliae by Danielle M. Tufts, Thomas Hart, Grace F. Chen, Sergios‐Orestis Kolokotronis, Maria A. Diuk‐Wasser, Yi‐Pin Lin

    Published 2019
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  5. 5
    Bayesian Estimation of Substitution Rates from Ancient DNA Sequences with Low Information Content

    Bayesian Estimation of Substitution Rates from Ancient DNA Sequences with Low Information Content by Simon Y. W. Ho, Robert Lanfear, Matthew J. Phillips, Ian Barnes, Jessica A. Thomas, Sergios‐Orestis Kolokotronis, Beth Shapiro

    Published 2011
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  6. 6
    Dynamically evolving novel overlapping gene as a factor in the SARS-CoV-2 pandemic

    Dynamically evolving novel overlapping gene as a factor in the SARS-CoV-2 pandemic by Chase W. Nelson, Zachary Ardern, Tony L. Goldberg, Chen Meng, Chen-Hao Kuo, Christina Ludwig, Sergios‐Orestis Kolokotronis, Xinzhu Wei

    Published 2020
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  7. 7
    Reconciling Apparent Conflicts between Mitochondrial and Nuclear Phylogenies in African Elephants

    Reconciling Apparent Conflicts between Mitochondrial and Nuclear Phylogenies in African Elephants by Yasuko Ishida, Tarás K. Oleksyk, Nicholas J. Georgiadis, Victor A. David, Kai Zhao, Robert M. Stephens, Sergios‐Orestis Kolokotronis, Alfred L. Roca

    Published 2011
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  8. 8
    Bats, Primates, and the Evolutionary Origins and Diversification of Mammalian Gammaherpesviruses

    Bats, Primates, and the Evolutionary Origins and Diversification of Mammalian Gammaherpesviruses by Marina Escalera‐Zamudio, Edith Rojas‐Anaya, Sergios‐Orestis Kolokotronis, Blanca Taboada, Elizabeth Loza‐Rubio, Maria L. Méndez‐Ojeda, Carlos F. Arias, Nikolaus Osterrieder, Alex D. Greenwood

    Published 2016
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  9. 9
    Historical Mammal Extinction on Christmas Island (Indian Ocean) Correlates with Introduced Infectious Disease

    Historical Mammal Extinction on Christmas Island (Indian Ocean) Correlates with Introduced Infectious Disease by Kelly B. Wyatt, Paula F. Campos, M. Thomas P. Gilbert, Sergios‐Orestis Kolokotronis, Wayne L. Hynes, Rob DeSalle, Peter Daszak, R. D. E. MacPhee, Alex D. Greenwood

    Published 2008
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  10. 10
    Evolution of hypervirulence by a <scp>MRSA</scp> clone through acquisition of a transposable element

    Evolution of hypervirulence by a <scp>MRSA</scp> clone through acquisition of a transposable element by Meredith A. Benson, Elizabeth A. Ohneck, Chanelle Ryan, Francis Alonzo, Hannah Smith, Apurva Narechania, Sergios‐Orestis Kolokotronis, Sarah W. Satola, Anne‐Catrin Uhlemann, Robert Sebra, Gintaras Deikus, Bo Shopsin, Paul J. Planet, Victor J. Torres

    Published 2014
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  11. 11
    Emergence of the Epidemic Methicillin-Resistant Staphylococcus aureus Strain USA300 Coincides with Horizontal Transfer of the Arginine Catabolic Mobile Element and <i>speG</i> -mediated Adaptations for Survival on Skin

    Emergence of the Epidemic Methicillin-Resistant Staphylococcus aureus Strain USA300 Coincides with Horizontal Transfer of the Arginine Catabolic Mobile Element and <i>speG</i> -med... by Paul J. Planet, Samuel J. LaRussa, Ali Dana, Hannah Smith, Amy Xu, Chanelle Ryan, Anne‐Catrin Uhlemann, Sam Boundy, Julia Goldberg, Apurva Narechania, Ritwij Kulkarni, Adam J. Ratner, Joan A. Geoghegan, Sergios‐Orestis Kolokotronis, Alice Prince

    Published 2013
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  12. 12
    Genomic Epidemiology of Vancomycin-Resistant Enterococcus faecium (VREfm) in Latin America: Revisiting The Global VRE Population Structure

    Genomic Epidemiology of Vancomycin-Resistant Enterococcus faecium (VREfm) in Latin America: Revisiting The Global VRE Population Structure by Rafael Ríos, Jinnethe Reyes, Lina P Carvajal, Sandra Rincón, Diana Panesso, Aura M Echeverri, An Q Dinh, Sergios‐Orestis Kolokotronis, Apurva Narechania, Truc T. Tran, José M. Munita, Barbara E. Murray, Paul J. Planet, César A. Arias, Lorena Díaz

    Published 2020
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  13. 13
    Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary

    Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary by Johannes Krause, Tina Unger, Aline Noçon, Anna‐Sapfo Malaspinas, Sergios‐Orestis Kolokotronis, Mathias Stiller, Leopoldo Héctor Soibelzon, Helen F. Spriggs, Paul H. Dear, Adrian W. Briggs, Sarah Bray, Stephen J. O’Brien, Gernot Rabeder, Paul Matheus, Alan Cooper, Montgomery Slatkin, Svante Pääbo, Michael Hofreiter

    Published 2008
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  14. 14
    Parallel Epidemics of Community-Associated Methicillin-Resistant<i>Staphylococcus aureus</i>USA300 Infection in North and South America

    Parallel Epidemics of Community-Associated Methicillin-Resistant<i>Staphylococcus aureus</i>USA300 Infection in North and South America by Paul J. Planet, Lorena Díaz, Sergios‐Orestis Kolokotronis, Apurva Narechania, Jinnethe Reyes, Galen Xing, Sandra Rincón, Hannah Smith, Diana Panesso, Chanelle Ryan, Dylan P. Smith, Manuel Guzmán, Jeannete Zurita, Robert Sebra, Gintaras Deikus, Rathel Nolan, Fred C. Tenover, George M. Weinstock, D. Ashley Robinson, César A. Arias

    Published 2015
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  15. 15
    Zoonotic Viruses Associated with Illegally Imported Wildlife Products

    Zoonotic Viruses Associated with Illegally Imported Wildlife Products by Kristine M. Smith, Simon J. Anthony, William M. Switzer, Jonathan H. Epstein, Tracie A. Seimon, Hongwei Jia, Maria D. Sanchez, Thanh Thao Huynh, G. Gale Galland, S. Shapiro, Jonathan M. Sleeman, Denise McAloose, Margot Stuchin, George Amato, Sergios‐Orestis Kolokotronis, W. Ian Lipkin, William B. Karesh, Peter Daszak, Nina Marano

    Published 2012
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  16. 16
    Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius

    Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius by Jeffrey Rosenfeld, Darryl Reeves, Mercer R. Brugler, Apurva Narechania, Sabrina Simon, R. Durrett, Jonathan Foox, Kevin V. Shianna, Michael C. Schatz, Jorge Gandara, Ebrahim Afshinnekoo, Ernest T. Lam, Alex Hastie, Saki Chan, Han Cao, Michael Saghbini, Alex Kentsis, Paul J. Planet, Vladyslav Kholodovych, Michael Tessler, Richard H. Baker, Rob DeSalle, Louis N. Sorkin, Sergios‐Orestis Kolokotronis, Mark E. Siddall, George Amato, Christopher E. Mason

    Published 2016
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  17. 17
    Local Diversification of Methicillin- Resistant Staphylococcus aureus ST239 in South America After Its Rapid Worldwide Dissemination

    Local Diversification of Methicillin- Resistant Staphylococcus aureus ST239 in South America After Its Rapid Worldwide Dissemination by Ana Maria Nunes Botelho, Maiana Oliveira Cerqueira e Costa, Ahmed M. Moustafa, Cristiana Ossaille Beltrame, Fabienne Antunes Ferreira, Marina Farrel Côrtes, Bruno Souza Scramignon Costa, Deborah Nascimento Santos Silva, Paula Terra Bandeira, Nicholas Costa Barroso Lima, Rangel Celso Souza, Luiz Gonzaga Paula de Almeida, Ana Tereza Ribeiro de Vasconcelos, Apurva Narechania, Chanelle Ryan, Kelsey O’Brien, Sergios‐Orestis Kolokotronis, Paul J. Planet, Marisa Nicolás, Agnes Marie Sá Figueiredo

    Published 2019
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  18. 18
    Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics

    Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics by Ebrahim Afshinnekoo, Cem Meydan, Shanin Chowdhury, Dyala Jaroudi, Collin Boyer, Nick Bernstein, Julia M. Maritz, Darryl Reeves, Jorge Gandara, Sagar Chhangawala, Sofia Ahsanuddin, Amber Simmons, Timothy Nessel, Bharathi Sundaresh, Elizabeth Pereira, Ellen Jorgensen, Sergios‐Orestis Kolokotronis, Nell Kirchberger, Isaac Garcia, David R. Gandara, Sean Dhanraj, Tanzina Nawrin, Yogesh Saletore, Noah Alexander, Priyanka Vijay, Elizabeth Hénaff, Paul Zumbo, Michael Walsh, G. D. O’Mullan, Scott Tighe, Joel T. Dudley, Anya Dunaif, Sean Ennis, Eoghan O’Halloran, Tiago R. Magalhães, Braden Boone, Angela Jones, Theodore R. Muth, Katie Schneider Paolantonio, Elizabeth Alter, Eric E. Schadt, Jeanne Garbarino, Robert J. Prill, Jane M. Carlton, Shawn Levy, Christopher E. Mason

    Published 2015
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  19. 19
    Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics

    Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics by Ebrahim Afshinnekoo, Cem Meydan, Shanin Chowdhury, Dyala Jaroudi, Collin Boyer, Nick Bernstein, Julia M. Maritz, Darryl Reeves, Jorge Gandara, Sagar Chhangawala, Sofia Ahsanuddin, Amber Simmons, Timothy Nessel, Bharathi Sundaresh, Elizabeth Pereira, Ellen Jorgensen, Sergios‐Orestis Kolokotronis, Nell Kirchberger, Isaac Garcia, David R. Gandara, Sean Dhanraj, Tanzina Nawrin, Yogesh Saletore, Noah Alexander, Priyanka Vijay, Elizabeth Hénaff, Paul Zumbo, Michael Walsh, G. D. O’Mullan, Scott Tighe, Joel T. Dudley, Anya Dunaif, Sean Ennis, Eoghan O’Halloran, Tiago R. Magalhães, Braden Boone, Angela Jones, Theodore R. Muth, Katie Schneider Paolantonio, Elizabeth Alter, Eric E. Schadt, Jeanne Garbarino, Robert J. Prill, Jane M. Carlton, Shawn Levy, Christopher E. Mason

    Published 2015
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