Search Results - Richard Varhol

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  1. 1
    FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology

    FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology by Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew N. Bainbridge, Steven J.M. Jones

    Published 2008
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  2. 2
    Implementation of rural provider-to-provider telehealth in country Western Australia: a retrospective observational analysis via the RE-AIM framework

    Implementation of rural provider-to-provider telehealth in country Western Australia: a retrospective observational analysis via the RE-AIM framework by Kaylie Toll, Suzanne Robinson, Stephen Andrew, A. W. Williams, Justin Yeung, Richard Varhol, Joanna C. Moullin

    Published 2025
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  3. 3
    A SAGE Approach to Discovery of Genes Involved in Autophagic Cell Death

    A SAGE Approach to Discovery of Genes Involved in Autophagic Cell Death by Sharon M. Gorski, Suganthi Chittaranjan, Erin Pleasance, Jamie Freeman, Carrie L. Anderson, Richard Varhol, Shaun Coughlin, Scott Zuyderduyn, Steven J.M. Jones, Marco A. Marra

    Published 2003
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  4. 4
    Profiling the HeLa S3 Transcriptome using Randomly Primed cDNA and Massively Parallel Short-Read Sequencing

    Profiling the HeLa S3 Transcriptome using Randomly Primed cDNA and Massively Parallel Short-Read Sequencing by Ryan D. Morin, Matthew N. Bainbridge, Anthony P. Fejes, Martin Hirst, Martin Krzywinski, Trevor J. Pugh, Helen McDonald, Richard Varhol, Steven J.M. Jones, Marco A. Marra

    Published 2008
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  5. 5
    Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

    Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing by Elizabeth D. Wederell, Mikhail Bilenky, Rebecca Cullum, Nina Thiessen, Melis Dagpinar, Allen Delaney, Richard Varhol, Yongjun Zhao, Thomas Zeng, Bridget Bernier, Matthew Ingham, Martin Hirst, Gordon Robertson, Marco A. Marra, Steven J.M. Jones, Pamela A. Hoodless

    Published 2008
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  6. 6
    <i>De novo</i> transcriptome assembly with ABySS

    <i>De novo</i> transcriptome assembly with ABySS by İnanç Birol, Shaun D. Jackman, Cydney Nielsen, Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Doug Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J.M. Jones

    Published 2009
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  7. 7
    Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak

    Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak by Jennifer L. Gardy, James C. Johnston, Shannan J. Ho Sui, Victoria Cook, Lena Shah, Elizabeth Brodkin, Shirley Rempel, Richard Moore, Yongjun Zhao, Robert A. Holt, Richard Varhol, İnanç Birol, Marcus Lem, Meenu K. Sharma, Kevin Elwood, Steven J.M. Jones, Fiona S. L. Brinkman, Robert C. Brunham, Patrick Tang

    Published 2011
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  8. 8
    Conserved role of intragenic DNA methylation in regulating alternative promoters

    Conserved role of intragenic DNA methylation in regulating alternative promoters by Alika K. Maunakea, Raman P. Nagarajan, Mikhail Bilenky, Tracy Ballinger, Cletus A. D’Souza, Shaun D. Fouse, Brett Johnson, Chibo Hong, Cydney Nielsen, Yongjun Zhao, Gustavo Turecki, Allen Delaney, Richard Varhol, Nina Thiessen, Ksenya Shchors, Vivi M. Heine, David H. Rowitch, Xiaoyun Xing, Chris Fiore, Maximiliaan Schillebeeckx, Steven J.M. Jones, David Haussler, Marco A. Marra, Martin Hirst, Ting Wang, J Costello

    Published 2010
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  9. 9
    Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

    Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution by Sohrab P. Shah, Ryan D. Morin, Jaswinder Khattra, Leah Prentice, Trevor J. Pugh, Angela Burleigh, Allen Delaney, Karen A. Gelmon, Ryan Guliany, Janine Senz, Christian Steidl, Robert A. Holt, Steven J.M. Jones, Mark Sun, Gillian Leung, Richard A. Moore, Tesa Severson, Greg Taylor, Andrew E. Teschendorff, Kane Tse, Gulisa Turashvili, Richard Varhol, Robin M. Warren, Peter H. Watson, Yongjun Zhao, Carlos Caldas, David G. Huntsman, Martin Hirst, Marco A. Marra, Samuel Aparício

    Published 2009
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  10. 10
    Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors

    Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors by Steven J.M. Jones, Janessa Laskin, Yvonne Y. Li, Obi L. Griffith, Jianghong An, Mikhail Bilenky, Yaron S.N. Butterfield, Timothée Cezard, Eric Chuah, Richard Corbett, Anthony P. Fejes, Malachi Griffith, John Yee, Montgomery Martin, Michael Mayo, Nataliya Melnyk, Ryan D. Morin, Trevor J. Pugh, Tesa Severson, Sohrab P. Shah, Margaret Sutcliffe, Angela Tam, Jefferson Terry, Nina Thiessen, Thomas A. Thomson, Richard Varhol, Thomas Zeng, Yongjun Zhao, Richard A. Moore, David G. Huntsman, İnanç Birol, Martin Hirst, Robert A. Holt, Marco A. Marra

    Published 2010
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  11. 11
    Concurrent <i>CIC</i> mutations, <i>IDH</i> mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers

    Concurrent <i>CIC</i> mutations, <i>IDH</i> mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers by Stephen Yip, Yaron S.N. Butterfield, Olena Morozova, Suganthi Chittaranjan, Michael Blough, Jianghong An, İnanç Birol, Charles Chesnelong, Readman Chiu, Eric Chuah, Richard Corbett, Roderick Docking, Marlo Firme, Martin Hirst, Shaun D. Jackman, Aly Karsan, Haiyan Li, David N. Louis, Alexandra Maslova, Richard A. Moore, Annie Moradian, Karen Mungall, Marco Perizzolo, Jenny Q. Qian, Glòria Roldán, Eric E. Smith, Jessica Tamura‐Wells, Nina Thiessen, Richard Varhol, Samuel Weiss, Wei Wu, Sean Young, Yongjun Zhao, Andrew J. Mungall, Steven J.M. Jones, Gregg B. Morin, Jennifer A. Chan, J. Gregory Cairncross, Marco A. Marra

    Published 2011
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  12. 12
    Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin

    Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin by Ryan D. Morin, Nathalie A. Johnson, Tesa Severson, Andrew J. Mungall, Jianghong An, Rodrigo Goya, Jessica E. Paul, Merrill Boyle, Bruce W. Woolcock, Florian Kuchenbauer, Damian Yap, R. Keith Humphries, Obi L. Griffith, Sohrab P. Shah, Henry Zhu, Michelle Kimbara, Pavel Shashkin, Jean Charlot, Marianna Tcherpakov, Richard Corbett, Angela Tam, Richard Varhol, Duane E. Smailus, Michelle Moksa, Yongjun Zhao, Allen Delaney, Hong Qian, İnanç Birol, Jacqueline E. Schein, Richard A. Moore, Robert A. Holt, Doug Horsman, Joseph M. Connors, Steven J.M. Jones, Samuel Aparício, Martin Hirst, Randy D. Gascoyne, Marco A. Marra

    Published 2010
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  13. 13
    Mutation of<i>FOXL2</i>in Granulosa-Cell Tumors of the Ovary

    Mutation of<i>FOXL2</i>in Granulosa-Cell Tumors of the Ovary by Sohrab P. Shah, Martin Köbel, Janine Senz, Ryan D. Morin, Blaise Clarke, Kimberly C. Wiegand, Gillian Leung, Abdalnasser Zayed, Erika Mehl, Steve E. Kalloger, Mark Sun, Ryan Giuliany, Erika Yorida, Steven J.M. Jones, Richard Varhol, Kenneth D. Swenerton, Dianne Miller, Philip B. Clement, Colleen Crane, Jason Madore, Diane Provencher, Peter C. K. Leung, Anna deFazio, Jaswinder Khattra, Gulisa Turashvili, Yongjun Zhao, Thomas Zeng, J. N. Mark Glover, Barbara C. Vanderhyden, Chengquan Zhao, Christine Parkinson, Mercedes Jimenez‐Liñan, David D.L. Bowtell, Anne‐Marie Mes‐Masson, James D. Brenton, Samuel Aparício, Niki Boyd, Martin Hirst, C. Blake Gilks, Marco A. Marra, David G. Huntsman

    Published 2009
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  14. 14
    A mouse atlas of gene expression: Large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells

    A mouse atlas of gene expression: Large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells by Asim Siddiqui, Jaswinder Khattra, Allen Delaney, Yongjun Zhao, Caroline R. Astell, Jennifer Asano, Ryan Babakaiff, Sarah Barber, Jaclyn Beland, Slavita Bohacec, Mabel Brown-John, Steve Chand, David L. Charest, Anita M. Charters, Rebecca Cullum, Noreen Dhalla, Ruth Featherstone, Daniela S. Gerhard, Brad G. Hoffman, Robert A. Holt, Juan Hou, Byron Kuo, Lisa L. C. Lee, Stephanie J. Lee, Derek Leung, Kevin Ma, Corey Matsuo, Michael Mayo, Helen McDonald, Anna‐Liisa Prabhu, Pawan Pandoh, Gregory J. Riggins, Teresa Ruiz de Algara, James L. Rupert, Duane E. Smailus, Jeff Stott, Miranda Tsai, Richard Varhol, Pavle Vrljicak, David Wong, Mona K. Wu, Yuan-Yun Xie, George Yang, Ida Zhang, Martin Hirst, Steven J.M. Jones, Cheryl D. Helgason, Elizabeth M. Simpson, Pamela A. Hoodless, Marco A. Marra

    Published 2005
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  15. 15
    The clonal and mutational evolution spectrum of primary triple-negative breast cancers

    The clonal and mutational evolution spectrum of primary triple-negative breast cancers by Sohrab P. Shah, Andrew Roth, Rodrigo Goya, Arusha Oloumi, Gavin Ha, Yongjun Zhao, Gulisa Turashvili, Jiarui Ding, Kane Tse, Gholamreza Haffari, Ali Bashashati, Leah Prentice, Jaswinder Khattra, Angela Burleigh, Damian Yap, Virginie Bernard, Andrew McPherson, Karey Shumansky, Anamaria Crisan, Ryan Giuliany, Alireza Heravi‐Moussavi, Jamie Rosner, Daniel Lai, İnanç Birol, Richard Varhol, Angela Tam, Noreen Dhalla, Thomas Zeng, Kevin Ma, Simon K. Chan, Malachi Griffith, Annie Moradian, S.‐W. Grace Cheng, Gregg B. Morin, Peter H. Watson, Karen A. Gelmon, Stephen Chia, Suet‐Feung Chin, Christina Curtis, Oscar M. Rueda, Paul D.P. Pharoah, Sambasivarao Damaraju, John R. Mackey, Kelly Hoon, Timothy T. Harkins, Vasisht Tadigotla, Mahvash Sigaroudinia, Philippe Gascard, Thea D. Tlsty, J Costello, Irmtraud M. Meyer, Connie J. Eaves, Wyeth W. Wasserman, Steven J.M. Jones, David G. Huntsman, Martin Hirst, Carlos Caldas, Marco A. Marra, Samuel Aparício

    Published 2012
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  16. 16
    A regulatory toolbox of MiniPromoters to drive selective expression in the brain

    A regulatory toolbox of MiniPromoters to drive selective expression in the brain by Élodie Portales-Casamar, Douglas J. Swanson, Li Liu, Charles N. de Leeuw, Kathleen G. Banks, Shannan J. Ho Sui, Debra L. Fulton, Johar Ali, Mahsa Amirabbasi, David J. Arenillas, Nazar Babyak, Sonia F. Black, Russell J. Bonaguro, Erich Brauer, Tara Candido, Mauro Castellarin, Jing Chen, Ying Chen, Jason C. Y. Cheng, Vik Chopra, Roderick Docking, Lisa Dreolini, Cletus A. D’Souza, Erin K. Flynn, Randy Glenn, Kristi Hatakka, Taryn G. Hearty, Behzad Imanian, Steven Jiang, Shadi Khorasan-zadeh, Ivana Komljenović, Stéphanie Laprise, Nancy Liao, Jonathan Lim, Stuart Lithwick, Flora Liu, Jun Liu, Meifen Lu, Melissa K. McConechy, Andrea J. McLeod, Marko Milisavljevic, Jacek Mis, Katie O’Connor, Betty Palma, Diana Palmquist, Jean-François Schmouth, Magdalena I. Swanson, Bonny Tam, Amy Ticoll, Jenna L. Turner, Richard Varhol, Jenny Vermeulen, Russell F. Watkins, Gary M. Wilson, Bibiana K. Y. Wong, Siaw H. Wong, Tony Y. T. Wong, George Yang, Athéna R. Ypsilanti, Steven J.M. Jones, Robert A. Holt, Dan Goldowitz, Wyeth W. Wasserman, Elizabeth M. Simpson

    Published 2010
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  17. 17
    Integrated genomic characterization of endometrial carcinoma

    Integrated genomic characterization of endometrial carcinoma by Gad Getz, Stacey B. Gabriel, Kristian Cibulskis, Eric Lander, Andrey Sivachenko, Carrie Sougnez, Robert Lawrence, Cyriac Kandoth, David J. Dooling, Robert W. Fulton, Lucinda Fulton, Joelle Kalicki-Veizer, Michael D. McLellan, Michelle D. O’Laughlin, Heather K. Schmidt, Richard K. Wilson, Kai Ye, Li Ding, Adrian Ally, Miruna Balasundaram, İnanç Birol, Yaron S.N. Butterfield, Rebecca Carlsen, Candace Carter, Andy Chu, Eric Chuah, Hye Jung E. Chun, Noreen Dhalla, Ranabir Guin, Carrie Hirst, Robert A. Holt, Steven J.M. Jones, Darlene Lee, Haiyan I. Li, Marco A. Marra, Michael Mayo, Richard A. Moore, Andrew J. Mungall, Patrick Plettner, Jacqueline E. Schein, Payal Sipahimalani, Angela Tam, Richard Varhol, A. Gordon Robertson, Andrew D. Cherniack, Itai Pashtan, Gordon Saksena, Robert C. Onofrio, Steven E. Schumacher, Barbara Tabak, Scott L. Carter, Bryan Hernandez, Jeff Gentry, Helga B. Salvesen, Kristin Ardlie, Wendy Winckler, Rameen Beroukhim, Matthew Meyerson, Angela Hadjipanayis, Semin Lee, Harshad S. Mahadeshwar, Peter J. Park, Alexei Protopopov, Xiaojia Ren, Sahil Seth, Xingzhi Song, Jiabin Tang, Ruibin Xi, Lixing Yang, Zeng Dong, Raju Kucherlapati, Lynda Chin, Jianhua Zhang, J. Todd Auman, Saianand Balu, Tom Bodenheimer, Elizabeth Buda, D. Neil Hayes, Alan P. Hoyle, Joshua M. Stuart, Corbin D. Jones, Shaowu Meng, Piotr A. Mieczkowski, Lisle E. Mose, Joel S. Parker, Charles M. Perou, Jeffrey Roach, Yan Shi, Janae V. Simons, Mathew G. Soloway, Donghui Tan, Michael D. Topal, Stephen C. Waring, Junyuan Wu, Katherine A. Hoadley, Stephen B. Baylin, Moiz Bootwalla, Phillip H. Lai, Timothy J. Triche, David Van Den Berg

    Published 2013
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  18. 18
    Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia

    Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia by T J Ley, Christopher A. Miller, Li Ding, Benjamin J. Raphael, Andrew J. Mungall, Gordon L. Robertson, Katherine A. Hoadley, Timothy J. Triche, Peter W. Laird, Jack Baty, Lucinda Fulton, Robert S. Fulton, Sharon E. Heath, Joelle Kalicki-Veizer, Cyriac Kandoth, Jeffery M. Klco, Daniel C. Koboldt, Krishna Kanchi, Shashikant Kulkarni, Tamara Lamprecht, David E. Larson, Ge Lin, Charles Lu, Michael D. McLellan, Joshua F. McMichael, Jacqueline E. Payton, Heather K. Schmidt, David H. Spencer, Michael H. Tomasson, John W. Wallis, Lukas D. Wartman, Mark A. Watson, John S. Welch, Michael C. Wendl, Adrian Ally, Miruna Balasundaram, İnanç Birol, Yaron S.N. Butterfield, Readman Chiu, Andy Chu, Eric Chuah, Hye Jung E. Chun, Richard Corbett, Noreen Dhalla, Ranabir Guin, Anyuan He, Carrie Hirst, Martin Hirst, Robert A. Holt, Steven J.M. Jones, Aly Karsan, Darlene Lee, Haiyan I. Li, Marco A. Marra, Michael Mayo, Richard A. Moore, Karen Mungall, Jeremy Parker, Erin Pleasance, Patrick Plettner, Jacquie Schein, Dominik Stoll, Lucas Swanson, Angela Tam, Nina Thiessen, Richard Varhol, Natasja Wye, Yongjun Zhao, Stacey Gabriel, Gad Getz, Carrie Sougnez, Lihua Zou, Mark D.M. Leiserson, Fabio Vandin, Hsin Ta Wu, Frederick R. Applebaum, Stephen B. Baylin, Rehan Akbani, Bradley M. Broom, Ken Chen, Thomas Motter, Khanh Cong Nguyen, John N. Weinstein, Nianziang Zhang, Martin L. Ferguson, Christopher M. Adams, Aaron Black, Jay Bowen, Julie M. Gastier‐Foster, Thomas W. Grossman, Tara M. Lichtenberg, Lisa Wise, Tanja M. Davidsen, John A. Demchok, Kenna Shaw, Margi Sheth, Heidi J. Sofia, Liming Yang, James R. Downing, Greg Eley

    Published 2013
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  19. 19
    Subgroup-specific structural variation across 1,000 medulloblastoma genomes

    Subgroup-specific structural variation across 1,000 medulloblastoma genomes by Paul A. Northcott, David Shih, John Peacock, Livia Garzia, A. Sorana Morrissy, Thomas Zichner, Adrian M. Stütz, Andrey Korshunov, Jüri Reimand, Steven E. Schumacher, Rameen Beroukhim, David W. Ellison, Christian R. Marshall, Anath C. Lionel, Stephen C. Mack, Adrian M. Dubuc, Yuan Yao, Vijay Ramaswamy, Betty Luu, Adi Rolider, Florence M.G. Cavalli, Xin Wang, Marc Remke, Xiaochong Wu, Readman Chiu, Andy Chu, Eric Chuah, Richard Corbett, Gemma R Hoad, Shaun D. Jackman, Yisu Li, Allan Lo, Karen Mungall, Ka Ming Nip, Jenny Q. Qian, Anthony Raymond, Nina Thiessen, Richard Varhol, İnanç Birol, Richard A. Moore, Andrew J. Mungall, Robert A. Holt, Daisuke Kawauchi, Martine F. Roussel, Marcel Kool, David Jones, Hendrick Witt, Africa Fernández-L, Anna Marie Kenney, Robert J. Wechsler‐Reya, Peter B. Dirks, Tzvi Aviv, Wiesława Grajkowska, Marta Perek‐Polnik, Christine Haberler, Olivier Delattre, Stéphanie Reynaud, François Doz, Sarah S. Pernet-Fattet, Byung-Kyu Cho, Seung-Ki Kim, Kyu‐Chang Wang, Wolfram Scheurlen, Charles G. Eberhart, Michelle Fèvre‐Montange, Anne Jouvet, Ian F. Pollack, Xing Fan, Karin M. Muraszko, G. Yancey Gillespie, Concezio Di Rocco, Luca Massimi, Erna Michiels, Nanne K. Kloosterhof, Pim J. French, Johan M. Kros, James M. Olson, Richard G. Ellenbogen, Karel Zitterbart, Leoš Křen, Reid C. Thompson, Michael K. Cooper, Bolesław Lach, Roger E. McLendon, Darell D. Bigner, Adam M. Fontebasso, Steffen Albrecht, Nada Jabado, Janet C. Lindsey, Simon Bailey, Nalin Gupta, William A. Weiss, László Bognár, Álmos Klekner, Timothy Van Meter, Toshihiro Kumabe, Teiji Tominaga, Samer K. Elbabaa, Jeffrey R. Leonard, Joshua B. Rubin

    Published 2012
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  20. 20
    Comprehensive molecular portraits of human breast tumours

    Comprehensive molecular portraits of human breast tumours by Daniel C. Koboldt, Robert S. Fulton, Michael D. McLellan, Heather K. Schmidt, Joelle Kalicki-Veizer, Joshua F. McMichael, Lucinda Fulton, David J. Dooling, Li Ding, Elaine R. Mardis, Richard K. Wilson, Adrian Ally, Miruna Balasundaram, Yaron S.N. Butterfield, Rebecca Carlsen, Candace Carter, Andy Chu, Eric Chuah, Hye Jung E. Chun, Robin Coope, Noreen Dhalla, Ranabir Guin, Carrie Hirst, Martin Hirst, Robert A. Holt, Darlene Lee, Haiyan I. Li, Michael Mayo, Richard A. Moore, Andrew J. Mungall, Erin Pleasance, A. Gordon Robertson, Jacqueline E. Schein, Arash Shafiei, Payal Sipahimalani, Jared R. Slobodan, Dominik Stoll, Angela Tam, Nina Thiessen, Richard Varhol, Natasja Wye, Thomas Zeng, Yongjun Zhao, İnanç Birol, Steven J.M. Jones, Marco A. Marra, Andrew D. Cherniack, Gordon Saksena, Robert C. Onofrio, Nam Pho, Scott L. Carter, Steven E. Schumacher, Barbara Tabak, Bryan Hernandez, Jeff Gentry, Huy Nguyen, Andrew Crenshaw, Kristin Ardlie, Rameen Beroukhim, Wendy Winckler, Gad Getz, Stacey Gabriel, Matthew Meyerson, Lynda Chin, Raju Kucherlapati, Katherine A. Hoadley, J. Todd Auman, Huihui Fan, Yidi J. Turman, Yan Shi, Ling Li, Michael D. Topal, Xiaping He, Hann Hsiang Chao, Aleix Prat, Grace O. Silva, Michael D. Iglesia, Zhao Wei, Jerry Usary, Jonathan S. Berg, Michael C. C. Adams, Jessica K. Booker, Junyuan Wu, Anisha Gulabani, Tom Bodenheimer, Alan P. Hoyle, Janae V. Simons, Matthew G. Soloway, Lisle E. Mose, Joshua M. Stuart, Saianand Balu, Peter J. Park, D. Neil Hayes, Charles M. Perou, Simeen Malik, Swapna Mahurkar‐Joshi, Hui Shen, Daniel J. Weisenberger, Timothy J. Triche, Phillip H. Lai

    Published 2012
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