Search Results - Nils Gehlenborg

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  1. 1
    Tasks, Techniques, and Tools for Genomic Data Visualization

    Tasks, Techniques, and Tools for Genomic Data Visualization by Sabrina Nusrat, Theresa Harbig, Nils Gehlenborg

    Published 2019
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  2. 2
    UpSetR: an R package for the visualization of intersecting sets and their properties

    UpSetR: an R package for the visualization of intersecting sets and their properties by Jake R. Conway, Alexander Lex, Nils Gehlenborg

    Published 2017
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  3. 3
    Gos: a declarative library for interactive genomics visualization in Python

    Gos: a declarative library for interactive genomics visualization in Python by Trevor Manz, Sehi L’Yi, Nils Gehlenborg

    Published 2023
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  4. 4
    Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization

    Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization by Sehi L’Yi, Qianwen Wang, Fritz Lekschas, Nils Gehlenborg

    Published 2021
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  5. 5
    HiPiler: Visual Exploration of Large Genome Interaction Matrices with Interactive Small Multiples

    HiPiler: Visual Exploration of Large Genome Interaction Matrices with Interactive Small Multiples by Fritz Lekschas, Benjamin Bach, Peter Kerpedjiev, Nils Gehlenborg, Hanspeter Pfister

    Published 2017
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  6. 6
    Vitessce: integrative visualization of multimodal and spatially-resolved single-cell data

    Vitessce: integrative visualization of multimodal and spatially-resolved single-cell data by Mark S. Keller, Ilan Gold, Chuck McCallum, Trevor Manz, Peter V. Kharchenko, Nils Gehlenborg

    Published 2021
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  7. 7
    Cistrome Data Browser: integrated search, analysis and visualization of chromatin data

    Cistrome Data Browser: integrated search, analysis and visualization of chromatin data by Len Taing, Ariaki Dandawate, Sehi L’Yi, Nils Gehlenborg, Myles Brown, Clifford A. Meyer

    Published 2023
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  8. 8
    Vitessce: integrative visualization of multimodal and spatially resolved single-cell data

    Vitessce: integrative visualization of multimodal and spatially resolved single-cell data by Mark S. Keller, Ilan Gold, Chuck McCallum, Trevor Manz, Peter V. Kharchenko, Nils Gehlenborg

    Published 2024
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  9. 9
    StratomeX: Visual Analysis of Large‐Scale Heterogeneous Genomics Data for Cancer Subtype Characterization

    StratomeX: Visual Analysis of Large‐Scale Heterogeneous Genomics Data for Cancer Subtype Characterization by Alexander Lex, Marc Streit, Hans‐Jörg Schulz, Christian Partl, Dieter Schmalstieg, P.J. Park, Nils Gehlenborg

    Published 2012
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  10. 10
    Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web

    Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web by Trevor Manz, Ilan Gold, Nathan Heath Patterson, Chuck McCallum, Mark S. Keller, Bruce W. Herr, Katy Börner, Jeffrey M. Spraggins, Nils Gehlenborg

    Published 2022
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  11. 11
    Diverse Mechanisms of Somatic Structural Variations in Human Cancer Genomes

    Diverse Mechanisms of Somatic Structural Variations in Human Cancer Genomes by Lixing Yang, Lovelace J. Luquette, Nils Gehlenborg, Ruibin Xi, Psalm Haseley, Chih-Heng Hsieh, Chengsheng Zhang, Xiaojia Ren, Alexei Protopopov, Lynda Chin, Raju Kucherlapati, Charles Lee, Peter J. Park

    Published 2013
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  12. 12
    A systems approach to prion disease

    A systems approach to prion disease by Daehee Hwang, Inyoul Y. Lee, Hyuntae Yoo, Nils Gehlenborg, Ji‐Hoon Cho, Brianne Petritis, David Baxter, Rose Pitstick, Rebecca Young, Doug Spicer, Nathan D. Price, John G. Hohmann, Stephen J. DeArmond, George A. Carlson, Leroy Hood

    Published 2009
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  13. 13
    HiGlass: web-based visual exploration and analysis of genome interaction maps

    HiGlass: web-based visual exploration and analysis of genome interaction maps by Peter Kerpedjiev, Nezar Abdennur, Fritz Lekschas, Chuck McCallum, Kasper Dinkla, Hendrik Strobelt, Jacob M. Luber, Scott Ouellette, Alaleh Azhir, Nikhil Kumar, Jeewon Hwang, Soohyun Lee, B. Alver, Hanspeter Pfister, Leonid A. Mirny, Peter J. Park, Nils Gehlenborg

    Published 2018
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  14. 14
    Guidelines for reporting single-cell RNA-seq experiments

    Guidelines for reporting single-cell RNA-seq experiments by Anja Füllgrabe, Nancy George, Matthew Green, Parisa Nejad, Bruce J. Aronow, Silvie Fexová, Clay Fischer, Mallory Freeberg, Laura Huerta, Norman Morrison, Richard H. Scheuermann, Deanne Taylor, Nicole Vasilevsky, Laura Clarke, Nils Gehlenborg, Jim Kent, John C. Marioni, Sarah A. Teichmann, Alvis Brāzma, Irene Papatheodorou

    Published 2020
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  15. 15
    Determining the characteristics of genetic disorders that predict inclusion in newborn genomic sequencing programs

    Determining the characteristics of genetic disorders that predict inclusion in newborn genomic sequencing programs by Thomas Minten, Nina B. Gold, Sarah K. Bick, Sophia Adelson, Nils Gehlenborg, Laura M. Amendola, François Boemer, Alison J. Coffey, Nicolas Encina, Alessandra Ferlini, Janbernd Kirschner, Bianca Russell, Laurent Servais, Kristen L. Sund, Ryan J. Taft, Petros Tsipouras, Hana Zouk, David Bick, Robert C. Green

    Published 2024
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  16. 16
    The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

    The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data by Sarah B. Reiff, Andrew J. Schroeder, Koray Kırlı, Andrea Cosolo, Clara Bakker, Luisa Mercado, Soohyun Lee, Alexander Veit, Alexander Balashov, Carl Vitzthum, William Ronchetti, Kent M. Pitman, Jeremy Johnson, Shannon Ehmsen, Peter Kerpedjiev, Nezar Abdennur, Maxim Imakaev, Serkan Utku Öztürk, Uğur Çamoğlu, Leonid A. Mirny, Nils Gehlenborg, B. Alver, Peter J. Park

    Published 2022
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  17. 17
    Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging

    Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging by Ellen M. Quardokus, Diane C. Saunders, Elizabeth McDonough, John W. Hickey, Christopher Werlein, Christine Surrette, Presha Rajbhandari, Anna Martinez Casals, Hua Tian, Lisa Lowery, Elizabeth K. Neumann, Frida Björklund, Taruna V. Neelakantan, Joshua Croteau, Anne E. Wiblin, Jeremy Fisher, April J. Livengood, Karen Dowell, Jonathan C. Silverstein, Jeffrey M. Spraggins, Gloria Pryhuber, Gail Deutsch, Fiona Ginty, Garry P. Nolan, Simon Melov, Danny Jonigk, Michael A. Caldwell, Ioannis S. Vlachos, Werner Müller, Nils Gehlenborg, Brent R. Stockwell, Emma Lundberg, M Snyder, Ronald N. Germain, Jeannie M. Camarillo, Neil L. Kelleher, Katy Börner, Andrea J. Radtke

    Published 2023
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  18. 18
    What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask

    What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask by Isaac S. Kohane, Bruce J. Aronow, Paul Avillach, Brett K. Beaulieu‐Jones, Riccardo Bellazzi, Robert L. Bradford, Gabriel A. Brat, Mario Cannataro, James J. Cimino, Noelia García Barrio, Nils Gehlenborg, Marzyeh Ghassemi, Alba Gutiérrez‐Sacristán, David A. Hanauer, John H. Holmes, Chuan Hong, Jeffrey G. Klann, Ne Hooi Will Loh, Yuan Luo, Kenneth D. Mandl, Mohamad Daniar, Jason H. Moore, Shawn N. Murphy, Antoine Neuraz, Kee Yuan Ngiam, Gilbert S. Omenn, Nathan Palmer, Lav P. Patel, Miguel Pedrera‐Jiménez, Piotr Sliz, Andrew M. South, Amelia L.M. Tan, Deanne Taylor, Bradley Taylor, Carlo Torti, Andrew Vallejos, Kavishwar B. Wagholikar, Griffin M. Weber, Tianxi Cai

    Published 2021
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  19. 19
    International electronic health record-derived post-acute sequelae profiles of COVID-19 patients

    International electronic health record-derived post-acute sequelae profiles of COVID-19 patients by Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez‐Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L’Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J Sanz Vidorreta, Vincent Benoît, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk‐Lam Ho, Amelia L.M. Tan, Byorn W.L. Tan, Nils Gehlenborg, Sara Lozano‐Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, Tianxi Cai, Andrew M. South, Isaac S. Kohane, Griffin M. Weber

    Published 2022
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  20. 20
    OME-Zarr: a cloud-optimized bioimaging file format with international community support

    OME-Zarr: a cloud-optimized bioimaging file format with international community support by Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John Bogovic, Jordão Bragantini, Eva Maxfield Brown, Jean‐Marie Burel, Xavier Casas Moreno, Gustavo de Medeiros, Erin E. Diel, David Gault, Satrajit Ghosh, Ilan Gold, Yaroslav O. Halchenko, Matthew Hartley, Dave Horsfall, Mark S. Keller, Mark Kittisopikul, Gabor Kovacs, A. Yoldaş, Koji Kyoda, Albane le Tournoulx de la Villegeorges, Tong Li, Prisca Liberali, Dominik Lindner, Melissa Linkert, Joel Lüthi, Jeremy Maitin-Shepard, Trevor Manz, Luca Marconato, Matthew McCormick, Merlin Lange, Khaled Mohamed, William J. Moore, Nils Norlin, Wei Ouyang, Buğra Özdemir, Giovanni Palla, Constantin Pape, Lucas Pelkmans, Tobias Pietzsch, Stephan Preibisch, Martin Prete, Norman Rzepka, Sameeul Samee, Nicholas J. Schaub, Hythem Sidky, Ahmet Can Solak, David R. Stirling, Jonathan Striebel, Christian Tischer, Daniel Toloudis, Isaac Virshup, Petr Walczysko, Alan M. Watson, Erin Weisbart, Frances Wong, Kevin A. Yamauchi, Omer Ali Bayraktar, Beth A. Cimini, Nils Gehlenborg, Muzlifah Haniffa, Nathan Hotaling, Shuichi Onami, Loïc A. Royer, Stephan Saalfeld, Oliver Stegle, Fabian J. Theis, Jason R. Swedlow

    Published 2023
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