Search Results - Michele Di Pierro

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  1. 1
    Automated Optimization of Potential Parameters

    Automated Optimization of Potential Parameters by Michele, Di Pierro, Ron, Elber

    Published 2013
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  2. 2
    Mesoscale Liquid Model of Chromatin Recapitulates Nuclear Order of Eukaryotes

    Mesoscale Liquid Model of Chromatin Recapitulates Nuclear Order of Eukaryotes by Rabia Laghmach, Michele Di Pierro, Davit A. Potoyan

    Published 2019
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  3. 3
    The interplay of chromatin phase separation and lamina interactions in nuclear organization

    The interplay of chromatin phase separation and lamina interactions in nuclear organization by Rabia Laghmach, Michele Di Pierro, Davit A. Potoyan

    Published 2021
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  4. 4
    Shaping the genome via lengthwise compaction, phase separation, and lamina adhesion

    Shaping the genome via lengthwise compaction, phase separation, and lamina adhesion by Sumitabha Brahmachari, Vinícius G. Contessoto, Michele Di Pierro, José N. Onuchic

    Published 2022
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  5. 5
    Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomes

    Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomes by Michele Di Pierro, Davit A. Potoyan, Peter G. Wolynes, José N. Onuchic

    Published 2018
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  6. 6
    Transferable model for chromosome architecture

    Transferable model for chromosome architecture by Michele Di Pierro, Bin Zhang, Erez Lieberman Aiden, Peter G. Wolynes, José N. Onuchic

    Published 2016
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  7. 7
    De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture

    De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture by Michele Di Pierro, Ryan R. Cheng, Erez Lieberman Aiden, Peter G. Wolynes, José N. Onuchic

    Published 2017
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  8. 8
    Interphase chromosomes of the <i>Aedes aegypti</i> mosquito are liquid crystalline and can sense mechanical cues

    Interphase chromosomes of the <i>Aedes aegypti</i> mosquito are liquid crystalline and can sense mechanical cues by Vinícius G. Contessoto, Olga Dudchenko, Erez Lieberman Aiden, Peter G. Wolynes, José N. Onuchic, Michele Di Pierro

    Published 2022
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  9. 9
    Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues

    Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues by Vinícius G. Contessoto, Olga Dudchenko, Erez Lieberman Aiden, Peter G. Wolynes, José N. Onuchic, Michele Di Pierro

    Published 2023
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  10. 10
    Exploring Chromosomal Structural Heterogeneity Across Multiple Cell Lines

    Exploring Chromosomal Structural Heterogeneity Across Multiple Cell Lines by Ryan R. Cheng, Vinícius G. Contessoto, Erez Lieberman Aiden, Peter G. Wolynes, Michele Di Pierro, José N. Onuchic

    Published 2020
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  11. 11
    Exploring chromosomal structural heterogeneity across multiple cell lines

    Exploring chromosomal structural heterogeneity across multiple cell lines by Ryan R. Cheng, Vinícius G. Contessoto, Erez Lieberman Aiden, Peter G. Wolynes, Michele Di Pierro, José N. Onuchic

    Published 2020
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  12. 12
    Author response: Exploring chromosomal structural heterogeneity across multiple cell lines

    Author response: Exploring chromosomal structural heterogeneity across multiple cell lines by Ryan R. Cheng, Vinícius G. Contessoto, Erez Lieberman Aiden, Peter G. Wolynes, Michele Di Pierro, José N. Onuchic

    Published 2020
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  13. 13
    The Nucleome Data Bank: Web-based Resources to Simulate and Analyze the Three-Dimensional Genome

    The Nucleome Data Bank: Web-based Resources to Simulate and Analyze the Three-Dimensional Genome by Vinícius G. Contessoto, Ryan R. Cheng, Arya Hajitaheri, Esteban Dodero‐Rojas, Matheus F. Mello, Erez Lieberman-Aiden, Peter G. Wolynes, Michele Di Pierro, José N. Onuchic

    Published 2019
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  14. 14
    The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome

    The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome by Vinícius G. Contessoto, Ryan R. Cheng, Arya Hajitaheri, Esteban Dodero‐Rojas, Matheus F. Mello, Erez Lieberman-Aiden, Peter G. Wolynes, Michele Di Pierro, José N. Onuchic

    Published 2020
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  15. 15
    Chromatin alternates between A and B compartments at kilobase scale for subgenic organization

    Chromatin alternates between A and B compartments at kilobase scale for subgenic organization by Hannah L. Harris, Huiya Gu, Moshe Olshansky, Ailun Wang, Irene Farabella, Yossi Eliaz, Achyuth Kalluchi, Akshay Krishna, Mozes Jacobs, A. Gesine Cauer, Melanie Pham, Suhas S.P. Rao, Olga Dudchenko, Arina D. Omer, Kiana Mohajeri, Sungjae Kim, Michael H. Nichols, Eric S. Davis, Dimos Gkountaroulis, Devika Udupa, Aviva Presser Aiden, Victor G. Corces, Douglas H. Phanstiel, William Stafford Noble, Guy Nir, Michele Di Pierro, Jeong‐Sun Seo, Michael E. Talkowski, Erez Lieberman Aiden, M. Jordan Rowley

    Published 2023
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  16. 16
    The Energetics and Physiological Impact of Cohesin Extrusion

    The Energetics and Physiological Impact of Cohesin Extrusion by Laura Vian, Aleksandra Pękowska, Suhas S.P. Rao, Kyong-Rim Kieffer-Kwon, Seolkyoung Jung, Laura Baranello, Su-Chen Huang, Laïla El Khattabi, Marei Dose, Nathanael Pruett, Adrian L. Sanborn, Andrés Canela, Yaakov Maman, Anna Oksanen, Wolfgang Resch, Xingwang Li, Byoungkoo Lee, Alexander L. Kovalchuk, Zhonghui Tang, Steevenson Nelson, Michele Di Pierro, Ryan R. Cheng, Ido Machol, Brian Glenn St Hilaire, Neva C. Durand, Muhammad S. Shamim, Elena K. Stamenova, José N. Onuchic, Yijun Ruan, André Nussenzweig, David Levens, Erez Lieberman Aiden, Rafael Casellas

    Published 2018
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  17. 17
    Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling

    Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling by Guy Nir, Irene Farabella, Cynthia Pérez Estrada, Carl G. Ebeling, Brian J. Beliveau, Hiroshi Sasaki, S. Dean Lee, Son C. Nguyen, Ruth B. McCole, Shyamtanu Chattoraj, Jelena Erceg, Jumana AlHaj Abed, Nuno M. C. Martins, Huy Q. Nguyen, Mohammed A. Hannan, Sheikh Russell, Neva C. Durand, Suhas S.P. Rao, Jocelyn Y. Kishi, Paula Soler-Vila, Michele Di Pierro, José N. Onuchic, Steven P. Callahan, John M. Schreiner, Jeff A. Stuckey, Peng Yin, Erez Lieberman Aiden, Marc A. Martı́-Renom, Chao-ting Wu

    Published 2018
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  18. 18
    Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample

    Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample by Marcela Sandoval‐Velasco, Olga Dudchenko, Juan Antonio Rodríguez, Cynthia Pérez Estrada, Marianne Dehasque, Claudia Fontsere, Sarah S. T. Mak, Ruqayya Khan, Vinícius G. Contessoto, Antonio B. Oliveira, Achyuth Kalluchi, Bernardo J. Zubillaga Herrera, Jiyun Jeong, Renata P. Roy, Ishawnia Christopher, David Weisz, Arina D. Omer, Sanjit Singh Batra, Muhammad S. Shamim, Neva C. Durand, Brendan L. O’Connell, Alfred L. Roca, Maksim V. Plikus, Mariya A. Kusliy, Svetlana A. Romanenko, Natalya A. Lemskaya, Natalya A. Serdyukova, Svetlana A. Modina, Polina L. Perelman, Elena A. Kizilova, С. И. Байбородин, Н. Б. Рубцов, Gur Machol, Krisha Rath, Ragini Mahajan, Parwinder Kaur, Andreas Gnirke, Isabel Garcia-Treviño, Rob L. Coke, Joseph P. Flanagan, Kelcie Pletch, Aurora Ruiz‐Herrera, Valerii Plotnikov, Innokentiy S. Pavlov, Naryya Innokentievna Pavlova, А. В. Протопопов, Michele Di Pierro, Alexander S. Graphodatsky, Eric S. Lander, M. Jordan Rowley, Peter G. Wolynes, José N. Onuchic, Love Dalén, Marc A. Martı́-Renom, M. Thomas P. Gilbert, Erez Lieberman Aiden

    Published 2024
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  19. 19
    3D genomics across the tree of life reveals condensin II as a determinant of architecture type

    3D genomics across the tree of life reveals condensin II as a determinant of architecture type by Claire Hoencamp, Olga Dudchenko, Ahmed M.O. Elbatsh, Sumitabha Brahmachari, Jonne A. Raaijmakers, Tom van Schaik, Ángela Sedeño Cacciatore, Vinícius G. Contessoto, Roy G. H. P. van Heesbeen, Bram van den Broek, Aditya N. Mhaskar, Hans Teunissen, Brian Glenn St Hilaire, David Weisz, Arina D. Omer, Melanie Pham, Zane Colaric, Zhenzhen Yang, Suhas S.P. Rao, Namita Mitra, Christopher Lui, Weijie Yao, Ruqayya Khan, Leonid L. Moroz, Andrea B. Kohn, Judy St. Leger, Alexandria Mena, Karen Holcroft, Maria Cristina Gambetta, Fabian Lim, Emma K. Farley, Nils Stein, Alexander F. Haddad, Daniel Chauss, Ayse Sena Mutlu, Meng C. Wang, Neil D. Young, Evin Hildebrandt, Hans H. Cheng, Christopher J. Knight, Theresa L.U. Burnham, Kevin A. Hovel, Andrew J. Beel, Pierre-Jean Mattei, Roger D. Kornberg, Wesley C. Warren, Gregory A. Cary, José Luis Gómez-Skármeta, Veronica F. Hinman, Kerstin Lindblad‐Toh, Federica Di Palma, Kazuhiro Maeshima, Asha S. Multani, Sen Pathak, Liesl Nel‐Themaat, Richard R. Behringer, Parwinder Kaur, René H. Medema, Bas van Steensel, Elzo de Wit, José N. Onuchic, Michele Di Pierro, Erez Lieberman Aiden, Benjamin D. Rowland

    Published 2021
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