Search Results - Maxwell R. Mumbach

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  1. 1
    Transcriptome-Wide Mapping of 5-methylcytidine RNA Modifications in Bacteria, Archaea, and Yeast Reveals m5C within Archaeal mRNAs

    Transcriptome-Wide Mapping of 5-methylcytidine RNA Modifications in Bacteria, Archaea, and Yeast Reveals m5C within Archaeal mRNAs by Sarit Edelheit, Schraga Schwartz, Maxwell R. Mumbach, Omri Wurtzel, Rotem Sorek

    Published 2013
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  2. 2
    Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE

    Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE by Ryan A. Flynn, Qiangfeng Cliff Zhang, Robert C. Spitale, Byron Lee, Maxwell R. Mumbach, Howard Y. Chang

    Published 2016
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  3. 3
    HiChIP: efficient and sensitive analysis of protein-directed genome architecture

    HiChIP: efficient and sensitive analysis of protein-directed genome architecture by Maxwell R. Mumbach, Adam J. Rubin, Ryan A. Flynn, Chao Dai, Paul A. Khavari, William J. Greenleaf, Howard Y. Chang

    Published 2016
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  4. 4
    Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA

    Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA by Schraga Schwartz, Douglas A. Bernstein, Maxwell R. Mumbach, Marko Jovanović, Rebecca H. Herbst, Brian X. León-Ricardo, J Engreitz, Mitchell Guttman, Rahul Satija, Eric S. Lander, Gerald R. Fink, Aviv Regev

    Published 2014
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  5. 5
    High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis

    High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis by Schraga Schwartz, Sudeep D. Agarwala, Maxwell R. Mumbach, Marko Jovanović, Philipp Mertins, A.A. Shishkin, Yuval Tabach, Tarjei S. Mikkelsen, Rahul Satija, Gary Ruvkun, Steven A. Carr, Eric S. Lander, Gerald R. Fink, Aviv Regev

    Published 2013
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  6. 6
    Dynamic chromatin regulatory landscape of human CAR T cell exhaustion

    Dynamic chromatin regulatory landscape of human CAR T cell exhaustion by David Gennert, Rachel C. Lynn, Jeff M. Granja, Evan Weber, Maxwell R. Mumbach, Yang Zhao, Zhana Duren, Elena Sotillo, William J. Greenleaf, Wing Hung Wong, Ansuman T. Satpathy, Crystal L. Mackall, Howard Y. Chang

    Published 2021
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  7. 7
    A Mutation in the Transcription Factor Foxp3 Drives T Helper 2 Effector Function in Regulatory T Cells

    A Mutation in the Transcription Factor Foxp3 Drives T Helper 2 Effector Function in Regulatory T Cells by Frédéric Van Gool, Michelle Nguyen, Maxwell R. Mumbach, Ansuman T. Satpathy, Wendy Rosenthal, Simone Giacometti, Duy Le, Weihong Liu, Todd M. Brusko, Mark S. Anderson, Alexander Y. Rudensky, Alexander Marson, Howard Y. Chang, Jeffrey A. Bluestone

    Published 2019
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  8. 8
    Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks

    Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks by Adam J. Rubin, Kevin R. Parker, Ansuman T. Satpathy, Yanyan Qi, Beijing Wu, Alvin J. Ong, Maxwell R. Mumbach, Andrew L. Ji, Daniel Sunwook Kim, Seung Woo Cho, Brian Zarnegar, William J. Greenleaf, Howard Y. Chang, Paul A. Khavari

    Published 2018
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  9. 9
    KLF4 recruits SWI/SNF to increase chromatin accessibility and reprogram the endothelial enhancer landscape under laminar shear stress

    KLF4 recruits SWI/SNF to increase chromatin accessibility and reprogram the endothelial enhancer landscape under laminar shear stress by Jan-Renier Moonen, James Chappell, Minyi Shi, Tsutomu Shinohara, Dan Li, Maxwell R. Mumbach, Fan Zhang, Ramesh V. Nair, Joseph Nasser, H. Daniel, Shalina Taylor, Lingli Wang, Ross J. Metzger, Howard Y. Chang, J Engreitz, M Snyder, Marlene Rabinovitch

    Published 2022
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  10. 10
    Dynamic profiling of the protein life cycle in response to pathogens

    Dynamic profiling of the protein life cycle in response to pathogens by Marko Jovanović, Michael S. Rooney, Philipp Mertins, Dariusz Przybylski, Nicolas Chevrier, Rahul Satija, Edwin Rodriguez, Alexander P. Fields, Schraga Schwartz, Raktima Raychowdhury, Maxwell R. Mumbach, Thomas Eisenhaure, Michal Rabani, Dave Gennert, Diana Lu, Toni Delorey, Jonathan S. Weissman, Steven A. Carr, Nir Hacohen, Aviv Regev

    Published 2015
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  11. 11
    Promoter of lncRNA Gene PVT1 Is a Tumor-Suppressor DNA Boundary Element

    Promoter of lncRNA Gene PVT1 Is a Tumor-Suppressor DNA Boundary Element by Seung Woo Cho, Jin Xu, Ruping Sun, Maxwell R. Mumbach, Ava C. Carter, Y. Grace Chen, Kathryn E. Yost, Jeewon Kim, Jing He, Stephanie Nevins, Suet‐Feung Chin, Carlos Caldas, Siyuan Liu, Max A. Horlbeck, Daniel A. Lim, Jonathan S. Weissman, Christina Curtis, Howard Y. Chang

    Published 2018
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  12. 12
    Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases

    Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases by M. Ryan Corces, Anna Shcherbina, Soumya Kundu, Michael J. Gloudemans, Laure Frésard, Jeffrey M. Granja, Bryan H. Louie, Tiffany Eulalio, Shadi Shams, S. Tansu Bagdatli, Maxwell R. Mumbach, Boxiang Liu, Kathleen S. Montine, William J. Greenleaf, Anshul Kundaje, Stephen B. Montgomery, Howard Y. Chang, Thomas J. Montine

    Published 2020
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  13. 13
    Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites

    Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites by Schraga Schwartz, Maxwell R. Mumbach, Marko Jovanović, Timothy C. Wang, Karolina Maciag, G. Guy Bushkin, Philipp Mertins, Dmitry Ter‐Ovanesyan, Naomi Habib, Davide Cacchiarelli, Neville E. Sanjana, Elizaveta Freinkman, Michael E. Pacold, Rahul Satija, Tarjei S. Mikkelsen, Nir Hacohen, Feng Zhang, Steven A. Carr, Eric S. Lander, Aviv Regev

    Published 2014
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  14. 14
    Retinoic acid and BMP4 cooperate with p63 to alter chromatin dynamics during surface epithelial commitment

    Retinoic acid and BMP4 cooperate with p63 to alter chromatin dynamics during surface epithelial commitment by Jillian M. Pattison, Sandra P. Melo, Samantha N. Piekos, Jessica L. Torkelson, Elizaveta Bashkirova, Maxwell R. Mumbach, Charlotte M. Rajasingh, Hanson H. Zhen, Lingjie Li, Eric J. Liaw, Daniel Alber, Adam J. Rubin, Gautam Shankar, Xiaomin Bao, Howard Y. Chang, Paul A. Khavari, Anthony E. Oro

    Published 2018
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  15. 15
    Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques

    Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques by Jelena Petrovic, Yeqiao Zhou, Maria Fasolino, Naomi Goldman, Gregory W. Schwartz, Maxwell R. Mumbach, Son C. Nguyen, Kelly S. Rome, Yogev Sela, Zachary Zapataro, Stephen C. Blacklow, Michael J. Kruhlak, Junwei Shi, Jon C. Aster, Eric F. Joyce, Shawn C. Little, Golnaz Vahedi, Warren S. Pear, Robert B. Faryabi

    Published 2019
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  16. 16
    Endogenous Retrovirus-Derived lncRNA BANCR Promotes Cardiomyocyte Migration in Humans and Non-human Primates

    Endogenous Retrovirus-Derived lncRNA BANCR Promotes Cardiomyocyte Migration in Humans and Non-human Primates by Kitchener D. Wilson, Mohamed Ameen, Hongchao Guo, Oscar J. Abilez, Lei Tian, Maxwell R. Mumbach, Sebastian Diecke, Xulei Qin, Yonggang Liu, Huaxiao Yang, Nan Ma, Sadhana Gaddam, Nathan James Cunningham, Mingxia Gu, Evgenios Neofytou, Maricela Prado, Thomas B. Hildebrandt, Ioannis Karakikes, Howard Y. Chang, Joseph C. Wu

    Published 2020
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  17. 17
    Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation

    Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation by Adam J. Rubin, Brook C. Barajas, Mayra Furlan-Magaril, Vanessa Lopez-Pajares, Maxwell R. Mumbach, I. BRIAN HOWARD, Daniel Sunwook Kim, Lisa D. Boxer, Jonathan Cairns, Mikhail Spivakov, Steven W. Wingett, Minyi Shi, Zhixin Zhao, William J. Greenleaf, Anshul Kundaje, M Snyder, Howard Y. Chang, Peter Fraser, Paul A. Khavari

    Published 2017
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  18. 18
    HiChIRP reveals RNA-associated chromosome conformation

    HiChIRP reveals RNA-associated chromosome conformation by Maxwell R. Mumbach, Jeffrey M. Granja, Ryan A. Flynn, Caitlin M. Roake, Ansuman T. Satpathy, Adam J. Rubin, Yanyan Qi, Zhaozhao Jiang, Shadi Shams, Bryan H. Louie, Jimmy K. Guo, David Gennert, M. Ryan Corces, Paul A. Khavari, Maninjay Atianand, Steven E. Artandi, Katherine A. Fitzgerald, William J. Greenleaf, Howard Y. Chang

    Published 2019
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  19. 19
    Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions

    Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions by Ryan A. Flynn, Julia A. Belk, Yanyan Qi, Yuki Yasumoto, Jin Wei, Mia Madel Alfajaro, Quanming Shi, Maxwell R. Mumbach, Aditi Limaye, Peter C. DeWeirdt, Cameron O. Schmitz, Kevin R. Parker, Elizabeth Woo, Howard Y. Chang, Tamás L. Horváth, Jan E. Carette, Carolyn R. Bertozzi, Craig B. Wilen, Ansuman T. Satpathy

    Published 2021
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  20. 20
    An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

    An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues by M. Ryan Corces, Alexandro E. Trevino, Emily G. Hamilton, Peyton Greenside, Nicholas A. Sinnott‐Armstrong, Sam Vesuna, Ansuman T. Satpathy, Adam J. Rubin, Kathleen S. Montine, Beijing Wu, Arwa S. Kathiria, Seung Woo Cho, Maxwell R. Mumbach, Ava C. Carter, Maya Kasowski, Lisa A. Orloff, Viviana I. Risca, Anshul Kundaje, Paul A. Khavari, Thomas J. Montine, William J. Greenleaf, Howard Y. Chang

    Published 2017
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