Search Results - Matthew D. Wilkerson

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  1. 1
    ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking

    ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking by Matthew D. Wilkerson, D. Neil Hayes

    Published 2010
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  2. 2
    ABRA: improved coding indel detection via assembly-based realignment

    ABRA: improved coding indel detection via assembly-based realignment by Lisle E. Mose, Matthew D. Wilkerson, D. Neil Hayes, Charles M. Perou, Joel S. Parker

    Published 2014
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  3. 3
    Comparative Plant Genomics Resources at PlantGDB

    Comparative Plant Genomics Resources at PlantGDB by Qunfeng Dong, Carolyn J. Lawrence, Shannon D. Schlueter, Matthew D. Wilkerson, Stefan Kurtz, Carol Lushbough, Volker Brendel

    Published 2005
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  4. 4
    Cafeteria diet-induced obesity causes oxidative damage in white adipose

    Cafeteria diet-induced obesity causes oxidative damage in white adipose by Amy R. Johnson, Matthew D. Wilkerson, Brante P. Sampey, Melissa A. Troester, D. Neil Hayes, Liza Makowski

    Published 2016
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  5. 5
    PlantGDB: a resource for comparative plant genomics

    PlantGDB: a resource for comparative plant genomics by Jon Duvick, Aisi Fu, Usha Muppirala, M. Sabharwal, Matthew D. Wilkerson, Carolyn J. Lawrence, C. Lushbough, Volker Brendel

    Published 2007
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  6. 6
    BlackOPs: increasing confidence in variant detection through mappability filtering

    BlackOPs: increasing confidence in variant detection through mappability filtering by Christopher R. Cabanski, Matthew D. Wilkerson, Matthew G. Soloway, Joel S. Parker, Jinze Liu, Jan F. Prins, J. S. Marron, Charles M. Perou, D. Neil Hayes

    Published 2013
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  7. 7
    Oncometabolite D-2-Hydroxyglutarate Inhibits ALKBH DNA Repair Enzymes and Sensitizes IDH Mutant Cells to Alkylating Agents

    Oncometabolite D-2-Hydroxyglutarate Inhibits ALKBH DNA Repair Enzymes and Sensitizes IDH Mutant Cells to Alkylating Agents by Pu Wang, Jing Wu, Shenghong Ma, Lei Zhang, Jun Yao, Katherine A. Hoadley, Matthew D. Wilkerson, Charles M. Perou, Kun‐Liang Guan, Dan Ye, Yue Xiong

    Published 2015
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  8. 8
    Integrated RNA and DNA sequencing improves mutation detection in low purity tumors

    Integrated RNA and DNA sequencing improves mutation detection in low purity tumors by Matthew D. Wilkerson, Christopher R. Cabanski, Wei Sun, Katherine A. Hoadley, Vonn Walter, Lisle E. Mose, Melissa A. Troester, Peter S. Hammerman, Joel S. Parker, Charles M. Perou, D. Neil Hayes

    Published 2014
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  9. 9
    BRG1/SMARCA4 Inactivation Promotes Non–Small Cell Lung Cancer Aggressiveness by Altering Chromatin Organization

    BRG1/SMARCA4 Inactivation Promotes Non–Small Cell Lung Cancer Aggressiveness by Altering Chromatin Organization by Tess Orvis, Austin J. Hepperla, Vonn Walter, Shujie Song, Jeremy M. Simon, Joel S. Parker, Matthew D. Wilkerson, Nisarg Desai, Michael B. Major, D. Neil Hayes, Ian J. Davis, Bernard E. Weissman

    Published 2014
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  10. 10
    Subtyping sub-Saharan esophageal squamous cell carcinoma by comprehensive molecular analysis

    Subtyping sub-Saharan esophageal squamous cell carcinoma by comprehensive molecular analysis by Wenjing Liu, Jeff M. Snell, William R. Jeck, Katherine A. Hoadley, Matthew D. Wilkerson, Joel S. Parker, Nirali M. Patel, Yohannie Mlombe, Gift Mulima, N. George Liomba, Lindsey L. Wolf, Carol G. Shores, Satish Gopal, Norman E. Sharpless

    Published 2016
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  11. 11
    Coexistent ARID1A–PIK3CA mutations promote ovarian clear-cell tumorigenesis through pro-tumorigenic inflammatory cytokine signalling

    Coexistent ARID1A–PIK3CA mutations promote ovarian clear-cell tumorigenesis through pro-tumorigenic inflammatory cytokine signalling by Ronald L. Chandler, Jeffrey S. Damrauer, Jesse R. Raab, Jonathan C. Schisler, Matthew D. Wilkerson, John P. Didion, Joshua Starmer, Daniel Serber, Della Yee, Jessie Xiong, David B. Darr, Fernando Pardo‐Manuel de Villena, William Y. Kim, Terry Magnuson

    Published 2015
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  12. 12
    Inhibitor-Sensitive FGFR2 and FGFR3 Mutations in Lung Squamous Cell Carcinoma

    Inhibitor-Sensitive FGFR2 and FGFR3 Mutations in Lung Squamous Cell Carcinoma by Rachel G. Liao, Joonil Jung, Jeremy H. Tchaicha, Matthew D. Wilkerson, Andrey Sivachenko, Ellen M. Beauchamp, Qingsong Liu, Trevor J. Pugh, Chandra Sekhar Pedamallu, D. Neil Hayes, Nathanael S. Gray, Gad Getz, Kwok‐Kin Wong, Robert I. Haddad, Matthew Meyerson, Peter S. Hammerman

    Published 2013
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  13. 13
    Immune response profiles from humans experimentally exposed to Phlebotomus duboscqi bites

    Immune response profiles from humans experimentally exposed to Phlebotomus duboscqi bites by Fernanda Fortes de Araújo, Maha Abdeladhim, Clarissa Teixeira, Kelly A. Hummer, Matthew D. Wilkerson, Roseanne Ressner, Inès Lakhal-Naouar, Michael W. Ellis, Claudio Meneses, Saule Nurmukhambetova, Régis Gomes, William D. Tolbert, George W. Turiansky, Marzena Pazgier, Fabiano Oliveira, Jesús G. Valenzuela, Shaden Kamhawi, Naomi Aronson

    Published 2024
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  14. 14
    Differential Pathogenesis of Lung Adenocarcinoma Subtypes Involving Sequence Mutations, Copy Number, Chromosomal Instability, and Methylation

    Differential Pathogenesis of Lung Adenocarcinoma Subtypes Involving Sequence Mutations, Copy Number, Chromosomal Instability, and Methylation by Matthew D. Wilkerson, Xiaoying Yin, Vonn Walter, Ni Zhao, Christopher R. Cabanski, Michele C. Hayward, C. Ryan Miller, Mark A. Socinski, Alden M. Parsons, Leigh B. Thorne, Benjamin E. Haithcock, Nirmal K. Veeramachaneni, William K. Funkhouser, Scott H. Randell, Philip S. Bernard, Charles M. Perou, D. Neil Hayes

    Published 2012
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  15. 15
    Alterations of LKB1 and KRAS and risk of brain metastasis: Comprehensive characterization by mutation analysis, copy number, and gene expression in non-small-cell lung carcinoma

    Alterations of LKB1 and KRAS and risk of brain metastasis: Comprehensive characterization by mutation analysis, copy number, and gene expression in non-small-cell lung carcinoma by Ni Zhao, Matthew D. Wilkerson, Usman Shah, Xiaoying Yin, Anyou Wang, Michele C. Hayward, Patrick J. Roberts, Carrie B. Lee, Alden M. Parsons, Leigh B. Thorne, Benjamin E. Haithcock, Juneko E. Grilley‐Olson, Thomas E. Stinchcombe, William K. Funkhouser, Kwok‐Kin Wong, Norman E. Sharpless, D. Neil Hayes

    Published 2014
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  16. 16
    Lung Squamous Cell Carcinoma mRNA Expression Subtypes Are Reproducible, Clinically Important, and Correspond to Normal Cell Types

    Lung Squamous Cell Carcinoma mRNA Expression Subtypes Are Reproducible, Clinically Important, and Correspond to Normal Cell Types by Matthew D. Wilkerson, Xiaoying Yin, Katherine A. Hoadley, Yufeng Liu, Michele C. Hayward, Christopher R. Cabanski, Kenneth L. Muldrew, C. Ryan Miller, Scott H. Randell, Mark A. Socinski, Alden M. Parsons, William K. Funkhouser, Carrie B. Lee, Patrick J. Roberts, Leigh B. Thorne, Philip S. Bernard, Charles M. Perou, D. Neil Hayes

    Published 2010
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  17. 17
    Factor XIIIA—expressing inflammatory monocytes promote lung squamous cancer through fibrin cross-linking

    Factor XIIIA—expressing inflammatory monocytes promote lung squamous cancer through fibrin cross-linking by Alessandro Porrello, Patrick L. Leslie, Emily B. Harrison, Balachandra K. Gorentla, Sravya Kattula, Subrata Ghosh, Salma H. Azam, Alisha Holtzhausen, Yvonne Chao, Michele C. Hayward, Trent A. Waugh, Sanggyu Bae, Virginia Godfrey, Scott H. Randell, Cecilia Oderup, Liza Makowski, Jared Weiss, Matthew D. Wilkerson, D. Neil Hayes, H. Shelton Earp, Albert S. Baldwin, Alisa S. Wolberg, Chad V. Pecot

    Published 2018
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  18. 18
    Torin 2 Derivative, NCATS-SM3710, Has Potent Multistage Antimalarial Activity through Inhibition of <i>P. falciparum</i> Phosphatidylinositol 4-Kinase (<i>Pf</i> PI4KIIIβ)

    Torin 2 Derivative, NCATS-SM3710, Has Potent Multistage Antimalarial Activity through Inhibition of <i>P. falciparum</i> Phosphatidylinositol 4-Kinase (<i>Pf</i> PI4KIIIβ) by Karthik Krishnan, Peter Ziniel, Hao Li, Xiuli Huang, Daniel Hupalo, Nita Gombakomba, Sandra Mendoza Guerrero, Thoai Dotrang, Xiao Lu, Diana Caridha, Anna R. Sternberg, Emma Hughes, Wei Sun, Daniel Y. Bargieri, Paul D. Roepe, Richard J. Sciotti, Matthew D. Wilkerson, Clifton L. Dalgard, Gregory J. Tawa, Amy Q. Wang, Xin Xu, Wei Zheng, Philip E.J. Sanderson, Wenwei Huang, Kim C. Williamson

    Published 2020
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  19. 19
    High XRCC1 Protein Expression Is Associated with Poorer Survival in Patients with Head and Neck Squamous Cell Carcinoma

    High XRCC1 Protein Expression Is Associated with Poorer Survival in Patients with Head and Neck Squamous Cell Carcinoma by Mei‐Kim Ang, Mihir R. Patel, Xiaoying Yin, Sneha Sundaram, Karen Fritchie, Ni Zhao, Yufeng Liu, Alex J. Freemerman, Matthew D. Wilkerson, Vonn Walter, Mark C. Weissler, W. Shockley, Marion E. Couch, Adam M. Zanation, Trevor Hackman, Bhishamjit S. Chera, Stephen L. Harris, C. Ryan Miller, Leigh B. Thorne, Michele C. Hayward, William K. Funkhouser, Andrew F. Olshan, Carol G. Shores, Liza Makowski, D. Neil Hayes

    Published 2011
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  20. 20
    Integrative Genomic and Proteomic Analyses Identify Targets for Lkb1-Deficient Metastatic Lung Tumors

    Integrative Genomic and Proteomic Analyses Identify Targets for Lkb1-Deficient Metastatic Lung Tumors by Julián Carretero, Takeshi Shimamura, Klarisa Rikova, Autumn L. Jackson, Matthew D. Wilkerson, Christa L. Borgman, Matthew S. Buttarazzi, Benjamin A. Sanofsky, Kate L. McNamara, K. Brandstetter, Zandra E. Walton, Ting-Lei Gu, Jeffrey C. Silva, Katherine Crosby, Geoffrey I. Shapiro, Sauveur-Michel Maira, Hongbin Ji, Diego H. Castrillón, Carla F. Kim, Carlos Garcı́a-Echeverrı́a, Nabeel Bardeesy, Norman E. Sharpless, D. Neil Hayes, William Y. Kim, Jeffrey A. Engelman, Kwok‐Kin Wong

    Published 2010
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