Search Results - Mary J. Goldman

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  1. 1
    Exploring TCGA Pan-Cancer Data at the UCSC Cancer Genomics Browser

    Exploring TCGA Pan-Cancer Data at the UCSC Cancer Genomics Browser by Melissa Cline, Brian Craft, Teresa Swatloski, Mary J. Goldman, Singer Ma, David Haussler, Jingchun Zhu

    Published 2013
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  2. 2
    The UCSC Cancer Genomics Browser: update 2015

    The UCSC Cancer Genomics Browser: update 2015 by Mary J. Goldman, Brian Craft, Teresa Swatloski, Melissa Cline, Olena Morozova, Mark Diekhans, David Haussler, Jingchun Zhu

    Published 2014
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  3. 3
    The UCSC Xena platform for public and private cancer genomics data visualization and interpretation

    The UCSC Xena platform for public and private cancer genomics data visualization and interpretation by Mary J. Goldman, Brian Craft, Mim Hastie, Kristupas Repečka, Akhil Kamath, Fran McDade, Dave Rogers, Angela N. Brooks, Jingchun Zhu, David Haussler

    Published 2018
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  4. 4
    The UCSC Cancer Genomics Browser: update 2013

    The UCSC Cancer Genomics Browser: update 2013 by Mary J. Goldman, Brian Craft, Teresa Swatloski, Kyle Ellrott, Melissa Cline, Mark Diekhans, Singer Ma, C Wilks, Joshua M. Stuart, David Haussler, Jingchun Zhu

    Published 2012
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  5. 5
    Visualizing and interpreting cancer genomics data via the Xena platform

    Visualizing and interpreting cancer genomics data via the Xena platform by Mary J. Goldman, Brian Craft, Mim Hastie, Kristupas Repečka, Fran McDade, Akhil Kamath, Ayan Banerjee, Yunhai Luo, Dave Rogers, Angela N. Brooks, Jingchun Zhu, David Haussler

    Published 2020
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  6. 6
    The UCSC cancer genomics browser: update 2011

    The UCSC cancer genomics browser: update 2011 by Zack Sanborn, Stephen C. Benz, Brian Craft, Christopher Szeto, Kord M. Kober, Laurence Meyer, Charles Vaske, Mary J. Goldman, Kayla Smith, Robert M. Kuhn, Donna Karolchik, W. James Kent, Joshua M. Stuart, David Haussler, Jingchun Zhu

    Published 2010
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  7. 7
    ENCODE whole-genome data in the UCSC Genome Browser: update 2012

    ENCODE whole-genome data in the UCSC Genome Browser: update 2012 by Kate R. Rosenbloom, Timothy R. Dreszer, Jeffrey C. Long, Venkat S. Malladi, Catherine A. Sloan, Brian J. Raney, Melissa Cline, Donna Karolchik, G. P. Barber, Hiram Clawson, Mark Diekhans, Pauline A. Fujita, Mary J. Goldman, R. C. Gravell, Rachel Harte, Angie S. Hinrichs, Vanessa M. Kirkup, Robert M. Kuhn, Katrina Learned, Morgan Maddren, Laurence Meyer, A. Pohl, Brooke Rhead, Matthew C. Wong, Ann S. Zweig, David Haussler, W. James Kent

    Published 2011
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  8. 8
    The UCSC Genome Browser database: update 2011

    The UCSC Genome Browser database: update 2011 by Pauline A. Fujita, Brooke Rhead, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Melissa Cline, Mary J. Goldman, G. P. Barber, Hiram Clawson, André Coelho, Mark Diekhans, Timothy R. Dreszer, Belinda Giardine, Rachel Harte, Jennifer Hillman‐Jackson, F. Hsu, Vanessa M. Kirkup, Robert M. Kuhn, Katrina Learned, Chunhao Li, Laurence Meyer, A. Pohl, Brian J. Raney, Kate R. Rosenbloom, Kayla Smith, David Haussler, W. James Kent

    Published 2010
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  9. 9
    The UCSC Genome Browser database: extensions and updates 2011

    The UCSC Genome Browser database: extensions and updates 2011 by Timothy R. Dreszer, Donna Karolchik, Ann S. Zweig, Angie S. Hinrichs, Brian J. Raney, Robert M. Kuhn, Laurence Meyer, Matthew Wong, Catherine A. Sloan, Kate R. Rosenbloom, Glenn Roe, Brooke Rhead, A. Pohl, Venkat S. Malladi, Chunhao Li, Katrina Learned, Vanessa M. Kirkup, F. Hsu, Rachel Harte, Luvina Guruvadoo, Mary J. Goldman, Belinda Giardine, Pauline A. Fujita, Mark Diekhans, Melissa Cline, Hiram Clawson, G. P. Barber, David Haussler, W. James Kent

    Published 2011
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  10. 10
    The UCSC Genome Browser database: extensions and updates 2013

    The UCSC Genome Browser database: extensions and updates 2013 by Laurence Meyer, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Robert M. Kuhn, Matthew Wong, Cricket A. Sloan, Kate R. Rosenbloom, Greg R. Roe, Brooke Rhead, Brian J. Raney, Andy Pohl, Venkat S. Malladi, Chin H. Li, Brian T. Lee, Katrina Learned, Vanessa M. Kirkup, Fan Hsu, Steve Heitner, Rachel Harte, Maximilian Haeussler, Luvina Guruvadoo, Mary J. Goldman, Belinda Giardine, Pauline A. Fujita, Timothy R. Dreszer, Mark Diekhans, Melissa Cline, Hiram Clawson, Galt P Barber, David Haussler, W. James Kent

    Published 2012
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  11. 11
    BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2

    BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2 by Melissa Cline, Rachel G. Liao, Michael T. Parsons, Benedict Paten, Faisal Alquaddoomi, Antonis C. Antoniou, Samantha Baxter, Larry Brody, Robert Cook‐Deegan, Amy Coffin, Fergus J. Couch, Brian Craft, Robert Currie, Chloe C. Dlott, Lena Dolman, Johan T. den Dunnen, Stephanie O. M. Dyke, Susan M. Domchek, Douglas F. Easton, Zachary Fischmann, William D. Foulkes, Judy E. Garber, David E. Goldgar, Mary J. Goldman, Peter Goodhand, Steven M. Harrison, David Haussler, Yoshihiro Kato, Bartha Maria Knoppers, Charles Markello, Robert L. Nussbaum, Kenneth Offit, Sharon E. Plon, Jem Rashbass, Heidi L. Rehm, Mark E. Robson, Wendy S. Rubinstein, Dominique Stoppa‐Lyonnet, Sean V. Tavtigian, Adrian Thorogood, Can Zhang, Marc Zimmermann, John Burn, Stephen J. Chanock, Gunnar Rätsch, Amanda B. Spurdle

    Published 2018
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  12. 12
    The chromatin accessibility landscape of primary human cancers

    The chromatin accessibility landscape of primary human cancers by M. Ryan Corces, Jeffrey M. Granja, Shadi Shams, Bryan H. Louie, José A. Seoane, Wanding Zhou, Tiago C. Silva, Clarice S. Groeneveld, Christopher K. Wong, Seung Woo Cho, Ansuman T. Satpathy, Maxwell R. Mumbach, Katherine A. Hoadley, A. Gordon Robertson, Nathan C. Sheffield, Ina Felau, Mauro A. A. Castro, Benjamin P. Berman, Louis M. Staudt, Jean C. Zenklusen, Peter W. Laird, Christina Curtis, William J. Greenleaf, Howard Y. Chang, Rehan Akbani, Christopher C. Benz, Evan A. Boyle, Bradley M. Broom, Andrew D. Cherniack, Brian Craft, John A. Demchok, Ashley S. Doane, Olivier Elemento, Martin L. Ferguson, Mary J. Goldman, D. Neil Hayes, Jing He, Toshinori Hinoue, Marcin Imieliński, Steven J.M. Jones, Anab Kemal, Theo Knijnenburg, Anil Korkut, De‐Chen Lin, Yuexin Liu, M.K.A. Mensah, Gordon B. Mills, Vincent Reuter, André Schultz, Hui Shen, Jason P. Smith, Roy Tarnuzzer, Sheyla Trefflich, Linghua Wang, John N. Weinstein, Lindsay Westlake, Jin Xu, Liming Yang, Christina Yau, Zhao Yang, Jingchun Zhu

    Published 2018
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  13. 13
    Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

    Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway by Jian Carrot‐Zhang, Xiaotong Yao, Siddhartha Devarakonda, Aditya Deshpande, Jeffrey S. Damrauer, Tiago C. Silva, Christopher K. Wong, Hyo Young Choi, Ina Felau, A. Gordon Robertson, Mauro A. A. Castro, Lisui Bao, Esther Rheinbay, Eric Minwei Liu, Tuan Trieu, David Haan, Christina Yau, Toshinori Hinoue, Yuexin Liu, Ofer Shapira, Kiran Kumar, Karen Mungall, Hailei Zhang, Jake June-Koo Lee, Ashton C. Berger, Galen F. Gao, Binyamin Zhitomirsky, Wen-Wei Liang, Meng Zhou, Sitapriya Moorthi, Alice H. Berger, Jun Li, Michael C. Zody, Li Ding, Andrew D. Cherniack, Gad Getz, Olivier Elemento, Christopher C. Benz, Joshua M. Stuart, Jean C. Zenklusen, Rameen Beroukhim, Jason C. Chang, Joshua D. Campbell, D. Neil Hayes, Lixing Yang, Peter W. Laird, John N. Weinstein, David J. Kwiatkowski, Ming‐Sound Tsao, William D. Travis, Ekta Khurana, Benjamin P. Berman, Katherine A. Hoadley, Nicolas Robine, Matthew Meyerson, Ramaswamy Govindan, Marcin Imieliński, Kanika Arora, Minita Shah, Jennifer M. G. Shelton, Reanne Bowlby, Verena Friedl, Mary J. Goldman, Brian Craft, David I. Heiman, Iman Hajirasouliha, Camir Ricketts, Pavana Anur, Kami Chiotti, Rory Johnson, John A. Demchok, Martin L. Ferguson, Anab Kemal, Roy Tarnuzzer, Linghua Wang, Liming Yang, Paul T. Spellman, Benjamin J. Raphael, Rehan Akbani, Jingchun Zhu, Steven J.M. Jones, Hui Shen

    Published 2021
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  14. 14
    Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma

    Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma by Lauren Fishbein, Ignaty Leshchiner, Vonn Walter, Ludmila Danilova, A. Gordon Robertson, Amy R. Johnson, Tara M. Lichtenberg, Bradley A. Murray, Hans K. Ghayee, Tobias Else, Shiyun Ling, Joshua M. Stuart, Aguirre A. de Cubas, Brandon M. Wenz, Esther Korpershoek, Antonio L. Amelio, Liza Makowski, W. Kimryn Rathmell, Anne‐Paule Gimenez‐Roqueplo, Thomas J. Giordano, L. Sylvia, Arthur S. Tischler, Karel Pacák, Katherine L. Nathanson, Matthew D. Wilkerson, Rehan Akbani, Adrian Ally, Laurence Amar, Antonio L. Amelio, Harindra Arachchi, L. Sylvia, Richard J. Auchus, J. Todd Auman, Robert Baertsch, Miruna Balasundaram, Saianand Balu, Detlef K. Bartsch, Éric Baudin, Thomas Bauer, Allison Beaver, Christopher C. Benz, Rameen Beroukhim, Felix Beuschlein, Tom Bodenheimer, Lori Boice, Jay Bowen, Reanne Bowlby, Denise Brooks, Rebecca Carlsen, Suzie Carter, Clarissa A. Cassol, Andrew D. Cherniack, Lynda Chin, Juok Cho, Eric Chuah, Sudha Chudamani, Leslie Cope, Daniel Crain, Erin Curley, Ludmila Danilova, Aguirre A. de Cubas, Ronald R. de Krijger, John A. Demchok, Timo Deutschbein, Noreen Dhalla, David Dimmock, Winand N.M. Dinjens, Tobias Else, Charis Eng, Jennifer Eschbacher, Martin Faßnacht, Ina Felau, Michael D. Feldman, Martin L. Ferguson, Ian T. Fiddes, Lauren Fishbein, Scott Frazer, Stacey Gabriel, Johanna Gardner, Julie M. Gastier‐Foster, Nils Gehlenborg, Mark Gerken, Gad Getz, Jennifer L. Geurts, Hans K. Ghayee, Anne‐Paule Gimenez‐Roqueplo, Thomas J. Giordano, Mary J. Goldman, Kiley Graim, Manaswi Gupta, David Haan, Stefanie Hahner, Constanze Hantel, David Haussler, D. Neil Hayes, David I. Heiman, Katherine A. Hoadley, Robert A. Holt, Alan P. Hoyle, Mei Huang

    Published 2017
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  15. 15
    Genomic basis for RNA alterations in cancer

    Genomic basis for RNA alterations in cancer by Claudia Calabrese, Natalie R. Davidson, Deniz Demircioğlu, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban, Claudia Calabrese, Natalie R. Davidson, Deniz Demircioğlu, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban, Liliana Greger, Siliang Li, Dongbing Liu, Marc D. Perry, Qian Xiang, Fan Zhang, Junjun Zhang, Peter J. Bailey, Serap Erkek, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Helena Kilpinen, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang Pan‐Hammarström, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak, Christina K. Yung, Shida Zhu, Philip Awadalla, Chad J. Creighton, Matthew Meyerson, B. F. Francis Ouellette, Kui Wu, Huanming Yang, Nuno A. Fonseca, André Kahles, Kjong-Van Lehmann, Lara Urban, Cameron M. Soulette, Yuichi Shiraishi, Fenglin Liu, Yao He, Deniz Demircioğlu, Natalie R. Davidson, Claudia Calabrese, Junjun Zhang, Marc D. Perry, Qian Xiang, Liliana Greger, Siliang Li, Dongbing Liu, Stefan G. Stark, Fan Zhang, Samirkumar B. Amin, Peter J. Bailey, Aurélien Chateigner, Isidro Cortés‐Ciriano, Brian Craft, Serap Erkek, Milana Frenkel‐Morgenstern, Mary J. Goldman, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Ekta Khurana, Helena Kilpinen, Jan O. Korbel, Fabien C. Lamaze, David K. Chang, Xiaobo Li, Xinyue Li, Xingmin Liu, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Morten M. Nielsen, Akinyemi I. Ojesina, Qiang Pan‐Hammarström, Peter J. Park, Chandra Sekhar Pedamallu

    Published 2020
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  16. 16
    High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

    High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations by Yiqun Zhang, Fengju Chen, Nuno A. Fonseca, Yao He, Masashi Fujita, Hidewaki Nakagawa, Zemin Zhang, Alvis Brāzma, Samirkumar B. Amin, Philip Awadalla, Peter J. Bailey, Alvis Brāzma, Angela N. Brooks, Claudia Calabrese, Aurélien Chateigner, Isidro Cortés‐Ciriano, Brian Craft, David Craft, Chad J. Creighton, Natalie R. Davidson, Deniz Demircioğlu, Serap Erkek, Nuno A. Fonseca, Milana Frenkel‐Morgenstern, Mary J. Goldman, Liliana Greger, Jonathan Göke, Yao He, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, André Kahles, Ekta Khurana, Helena Kilpinen, Jan O. Korbel, Fabien C. Lamaze, Kjong-Van Lehmann, David K. Chang, Siliang Li, Xiaobo Li, Xinyue Li, Dongbing Liu, Fenglin Liu, Xingmin Liu, Maximillian G. Marin, Julia Markowski, Matthew Meyerson, Tannistha Nandi, Morten Muhlig Nielsen, Akinyemi I. Ojesina, B. F. Francis Ouellette, Qiang Pan‐Hammarström, Peter J. Park, Chandra Sekhar Pedamallu, Jakob Skou Pedersen, Marc D. Perry, Gunnar Rätsch, Roland F. Schwarz, Yuichi Shiraishi, Reiner Siebert, Cameron M. Soulette, Stefan G. Stark, Oliver Stegle, Hong Su, Patrick Tan, Bin Tean Teh, Lara Urban, Jian Wang, Sebastian M. Waszak, Kui Wu, Qian Xiang, Heng Xiong, Sergei Yakneen, Huanming Yang, Chen Ye, Christina K. Yung, Fan Zhang, Junjun Zhang, Xiuqing Zhang, Zemin Zhang, Liangtao Zheng, Jingchun Zhu, Shida Zhu, Kadir C. Akdemir, Eva G. Álvarez, Adrian Baez‐Ortega, Rameen Beroukhim, Paul C. Boutros, David D.L. Bowtell, Benedikt Brors, Kathleen H. Burns, Peter J. Campbell, Kin Chan, Ken Chen, Isidro Cortés‐Ciriano, Ana Dueso-Barroso, Andrew Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam

    Published 2020
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