Resultats de la cerca - Martin J. Aryee

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  1. 1
    Subset Quantile Normalization Using Negative Control Features

    Subset Quantile Normalization Using Negative Control Features per Zhijin Wu, Martin J. Aryee

    Publicat 2010
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  2. 2
    hichipper: a preprocessing pipeline for calling DNA loops from HiChIP data

    hichipper: a preprocessing pipeline for calling DNA loops from HiChIP data per Caleb A. Lareau, Martin J. Aryee

    Publicat 2018
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  3. 3
    diffloop: a computational framework for identifying and analyzing differential DNA loops from sequencing data

    diffloop: a computational framework for identifying and analyzing differential DNA loops from sequencing data per Caleb A. Lareau, Martin J. Aryee

    Publicat 2017
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  4. 4
    A cell epigenotype specific model for the correction of brain cellular heterogeneity bias and its application to age, brain region and major depression

    A cell epigenotype specific model for the correction of brain cellular heterogeneity bias and its application to age, brain region and major depression per Jerry Guintivano, Martin J. Aryee, Zachary Kaminsky

    Publicat 2013
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  5. 5
    Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing

    Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing per Michael J. Ziller, Kasper D. Hansen, Alexander Meissner, Martin J. Aryee

    Publicat 2014
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  6. 6
    Feature Selection and Dimension Reduction for Single Cell RNA-Seq based on a Multinomial Model

    Feature Selection and Dimension Reduction for Single Cell RNA-Seq based on a Multinomial Model per F. William Townes, Stephanie C. Hicks, Martin J. Aryee, Rafael A. Irizarry

    Publicat 2019
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  7. 7
    Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model

    Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model per F. William Townes, Stephanie C. Hicks, Martin J. Aryee, Rafael A. Irizarry

    Publicat 2019
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  8. 8
    Estimating Diarrhea Mortality among Young Children in Low and Middle Income Countries

    Estimating Diarrhea Mortality among Young Children in Low and Middle Income Countries per Christa L. Fischer Walker, Martin J. Aryee, Cynthia Boschi-Pinto, Robert E. Black

    Publicat 2012
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  9. 9
    An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation)

    An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation) per Martin J. Aryee, José A. Gutiérrez‐Pabello, Igor Kramnik, Tapabrata Maiti, John Quackenbush

    Publicat 2009
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  10. 10
    Data-Driven Polymer Model for Mechanistic Exploration of Diploid Genome Organization

    Data-Driven Polymer Model for Mechanistic Exploration of Diploid Genome Organization per Yifeng Qi, Alejandro Reyes, Sarah E. Johnstone, Martin J. Aryee, B Bernstein, Bin Zhang

    Publicat 2020
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  11. 11
    Diarrhea incidence in low- and middle-income countries in 1990 and 2010: a systematic review

    Diarrhea incidence in low- and middle-income countries in 1990 and 2010: a systematic review per Christa L. Fischer Walker, Jamie Perin, Martin J. Aryee, Cynthia Boschi-Pinto, Robert E. Black

    Publicat 2012
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  12. 12
    CIRCLE-seq: a highly sensitive in vitro screen for genome-wide CRISPR–Cas9 nuclease off-targets

    CIRCLE-seq: a highly sensitive in vitro screen for genome-wide CRISPR–Cas9 nuclease off-targets per Shengdar Q. Tsai, Nathalie T. Nguyen, Jose Malagon-Lopez, Ved V. Topkar, Martin J. Aryee, J. Keith Joung

    Publicat 2017
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  13. 13
    Global Causes of Diarrheal Disease Mortality in Children <5 Years of Age: A Systematic Review

    Global Causes of Diarrheal Disease Mortality in Children <5 Years of Age: A Systematic Review per Claudio F. Lanata, Christa Fischer-Walker, Ana Cecilia Olascoaga, Carla X. Torres, Martin J. Aryee, Robert E. Black

    Publicat 2013
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  14. 14
    Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors

    Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors per Julian Grünewald, Ronghao Zhou, Sara P. Garcia, Sowmya Iyer, Caleb A. Lareau, Martin J. Aryee, J. Keith Joung

    Publicat 2019
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  15. 15
    CRISPR DNA base editors with reduced RNA off-target and self-editing activities

    CRISPR DNA base editors with reduced RNA off-target and self-editing activities per Julian Grünewald, Ronghao Zhou, Sowmya Iyer, Caleb A. Lareau, Sara P. Garcia, Martin J. Aryee, J. Keith Joung

    Publicat 2019
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  16. 16
    Extended-representation bisulfite sequencing of gene regulatory elements in multiplexed samples and single cells

    Extended-representation bisulfite sequencing of gene regulatory elements in multiplexed samples and single cells per Sarah J. Shareef, Samantha M. Bevill, Ayush T. Raman, Martin J. Aryee, Peter van Galen, Volker Hovestadt, B Bernstein

    Publicat 2021
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  17. 17
    Accurate genome-scale percentage DNA methylation estimates from microarray data

    Accurate genome-scale percentage DNA methylation estimates from microarray data per Martin J. Aryee, Zhijin Wu, Christine Ladd‐Acosta, Brian R. Herb, Andrew P. Feinberg, Srinivasan Yegnasubramanian, Rafael A. Irizarry

    Publicat 2010
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  18. 18
    Lysine Demethylase KDM4A Associates with Translation Machinery and Regulates Protein Synthesis

    Lysine Demethylase KDM4A Associates with Translation Machinery and Regulates Protein Synthesis per Capucine Van Rechem, Joshua C. Black, Myriam Boukhali, Martin J. Aryee, S. Gräslund, Wilhelm Haas, Cyril H. Benes, Johnathan R. Whetstine

    Publicat 2015
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  19. 19
    Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

    Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays per Martin J. Aryee, Andrew E. Jaffe, Héctor Corrada Bravo, Christine Ladd‐Acosta, Andrew P. Feinberg, Kasper D. Hansen, Rafael A. Irizarry

    Publicat 2014
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  20. 20
    Reversible switching between epigenetic states in honeybee behavioral subcastes

    Reversible switching between epigenetic states in honeybee behavioral subcastes per Brian R. Herb, Florian Wolschin, Kasper D. Hansen, Martin J. Aryee, Ben Langmead, Rafael A. Irizarry, Gro V. Amdam, Andrew P. Feinberg

    Publicat 2012
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