Search Results - Mario Nicodemi

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  1. 1
    Models of chromosome structure

    Models of chromosome structure by Mario Nicodemi, Ana Pombo

    Published 2014
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  2. 2
    Thermodynamic Pathways to Genome Spatial Organization in the Cell Nucleus

    Thermodynamic Pathways to Genome Spatial Organization in the Cell Nucleus by Mario Nicodemi, Antonella Prisco

    Published 2009
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  3. 3
    Symmetry-Breaking Model for<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:mi mathvariant="normal">X</mml:mi></mml:math>-Chromosome Inactivation

    Symmetry-Breaking Model for<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:mi mathvariant="normal">X</mml:mi></mml:math>-Chromosome Inactivation by Mario Nicodemi, Antonella Prisco

    Published 2007
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  4. 4
    Polymer physics of chromosome large-scale 3D organisation

    Polymer physics of chromosome large-scale 3D organisation by Andrea M. Chiariello, Carlo Annunziatella, Simona Bianco, Andrea Esposito, Mario Nicodemi

    Published 2016
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  5. 5
    Polymer physics indicates chromatin folding variability across single-cells results from state degeneracy in phase separation

    Polymer physics indicates chromatin folding variability across single-cells results from state degeneracy in phase separation by Mattia Conte, Luca Fiorillo, Simona Bianco, Andrea M. Chiariello, Andrea Esposito, Mario Nicodemi

    Published 2020
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  6. 6
    Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding

    Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding by Mattia Conte, Ehsan Irani, Andrea M. Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito, Mario Nicodemi

    Published 2022
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  7. 7
    Complexity of chromatin folding is captured by the strings and binders switch model

    Complexity of chromatin folding is captured by the strings and binders switch model by Mariano Barbieri, Mita Chotalia, James A. Fraser, Liron-Mark Lavitas, Josée Dostie, Ana Pombo, Mario Nicodemi

    Published 2012
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  8. 8
    Nonequilibrium Chromosome Looping via Molecular Slip Links

    Nonequilibrium Chromosome Looping via Molecular Slip Links by Chris A. Brackley, James Johnson, Davide Michieletto, A. N. Morozov, Mario Nicodemi, Peter R. Cook, Davide Marenduzzo

    Published 2017
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  9. 9
    Extrusion without a motor: a new take on the loop extrusion model of genome organization

    Extrusion without a motor: a new take on the loop extrusion model of genome organization by Chris A. Brackley, James Johnson, Davide Michieletto, A. N. Morozov, Mario Nicodemi, Peter R. Cook, Davide Marenduzzo

    Published 2018
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  10. 10
    Polymer physics reveals a combinatorial code linking 3D chromatin architecture to 1D chromatin states

    Polymer physics reveals a combinatorial code linking 3D chromatin architecture to 1D chromatin states by Andrea Esposito, Simona Bianco, Andrea M. Chiariello, Alex Abraham, Luca Fiorillo, Mattia Conte, Raffaele Campanile, Mario Nicodemi

    Published 2022
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  11. 11
    Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells

    Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells by Andrea M. Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito, Andrea Fontana, Francesca Vercellone, Mattia Conte, Mario Nicodemi

    Published 2024
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  12. 12
    Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells

    Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells by Mariano Barbieri, Sheila Q. Xie, Elena Torlai Triglia, Andrea M. Chiariello, Simona Bianco, Inês de Santiago, Miguel R. Branco, David Rueda, Mario Nicodemi, Ana Pombo

    Published 2017
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  13. 13
    Polymer physics predicts the effects of structural variants on chromatin architecture

    Polymer physics predicts the effects of structural variants on chromatin architecture by Simona Bianco, Darío G. Lupiáñez, Andrea M. Chiariello, Carlo Annunziatella, Katerina Kraft, Robert Schöpflin, Lars Wittler, Guillaume Andrey, Martin Vingron, Ana Pombo, Stefan Mundlos, Mario Nicodemi

    Published 2018
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  14. 14
    Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin

    Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin by Luca Fiorillo, Francesco Musella, Mattia Conte, Rieke Kempfer, Andrea M. Chiariello, Simona Bianco, Alexander Kukalev, Ibai Irastorza-Azcárate, Andrea Esposito, Alex Abraham, Antonella Prisco, Ana Pombo, Mario Nicodemi

    Published 2021
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  15. 15
    RNA-mediated symmetry breaking enables singular olfactory receptor choice

    RNA-mediated symmetry breaking enables singular olfactory receptor choice by Ariel Pourmorady, Elizaveta Bashkirova, Andrea M. Chiariello, Houda Belagzhal, Albana Kodra, Rachel Duffié, Jerome Kahiapo, Kevin D. Monahan, Joan Pulupa, Ira Schieren, Alexa Osterhoudt, Job Dekker, Mario Nicodemi, Stavros Lomvardas

    Published 2023
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  16. 16
    <scp>RNA</scp> polymerase <scp>II</scp> primes Polycomb‐repressed developmental genes throughout terminal neuronal differentiation

    <scp>RNA</scp> polymerase <scp>II</scp> primes Polycomb‐repressed developmental genes throughout terminal neuronal differentiation by Carmelo Ferrai, Elena Torlai Triglia, Jessica R. Risner-Janiczek, Tiago Rito, Owen J. L. Rackham, Inês de Santiago, Alexander Kukalev, Mario Nicodemi, Altuna Akalin, Meng Li, Mark A. Ungless, Ana Pombo

    Published 2017
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  17. 17
    Challenges and guidelines toward 4D nucleome data and model standards

    Challenges and guidelines toward 4D nucleome data and model standards by Marc A. Martí‐Renom, Geneviève Almouzni, Wendy A. Bickmore, Kerstin Bystricky, Giacomo Cavalli, Peter Fraser, Susan M. Gasser, Luca Giorgetti, Édith Heard, Mario Nicodemi, Marcelo Nöllmann, Modesto Orozco, Ana Pombo, Maria‐Elena Torres‐Padilla

    Published 2018
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  18. 18
    Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation

    Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation by Naoki Kubo, Haruhiko Ishii, Xiong Xiong, Simona Bianco, Franz Meitinger, Rong Hu, James D. Hocker, Mattia Conte, David U. Gorkin, Miao Yu, Bin Li, Jesse R. Dixon, Ming Hu, Mario Nicodemi, Huimin Zhao, Bing Ren

    Published 2021
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  19. 19
    CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains

    CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains by Hui Huang, Quan Zhu, Adam Jussila, Yuanyuan Han, Bogdan Bintu, Colin Kern, Mattia Conte, Yanxiao Zhang, Simona Bianco, Andrea M. Chiariello, Miao Yu, Rong Hu, Melodi Tastemel, Ivan Jurić, Ming Hu, Mario Nicodemi, Xiaowei Zhuang, Bing Ren

    Published 2021
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  20. 20
    Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C

    Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C by Robert A. Beagrie, Christoph J. Thieme, Carlo Annunziatella, Catherine Baugher, Yingnan Zhang, Markus Schueler, Alexander Kukalev, Rieke Kempfer, Andrea M. Chiariello, Simona Bianco, Yichao Li, Trenton J. Davis, Antonio Scialdone, Lonnie R. Welch, Mario Nicodemi, Ana Pombo

    Published 2023
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