Zoekresultaten - Luis M. Rodriguez‐R

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  1. 1
    Estimating coverage in metagenomic data sets and why it matters

    Estimating coverage in metagenomic data sets and why it matters door Luis M. Rodriguez‐R, Konstantinos T. Konstantinidis

    Gepubliceerd in 2014
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  2. 2
    The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes

    The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes door Luis M. Rodriguez‐R, Konstantinos T. Konstantinidis

    Gepubliceerd in 2016
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  3. 3
    The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes

    The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes door Luis M. Rodriguez‐R, Konstantinos T. Konstantinidis

    Gepubliceerd in 2016
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  4. 4
    MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

    MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences door Chengwei Luo, Luis M. Rodriguez‐R, Konstantinos T. Konstantinidis

    Gepubliceerd in 2014
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  5. 5
    ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores

    ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores door Luis H. Orellana, Luis M. Rodriguez‐R, Konstantinos T. Konstantinidis

    Gepubliceerd in 2016
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  6. 6
    Iterative subtractive binning of freshwater chronoseries metagenomes identifies over 400 novel species and their ecologic preferences

    Iterative subtractive binning of freshwater chronoseries metagenomes identifies over 400 novel species and their ecologic preferences door Luis M. Rodriguez‐R, Despina Tsementzi, Chengwei Luo, Konstantinos T. Konstantinidis

    Gepubliceerd in 2020
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  7. 7
    Naming the unnamed: over 65,000 Candidatus names for unnamed Archaea and Bacteria in the Genome Taxonomy Database

    Naming the unnamed: over 65,000 Candidatus names for unnamed Archaea and Bacteria in the Genome Taxonomy Database door Mark J. Pallen, Luis M. Rodriguez‐R, Nabil-Fareed Alikhan

    Gepubliceerd in 2022
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  8. 8
    High-throughput ANI Analysis of 90K Prokaryotic Genomes Reveals Clear Species Boundaries

    High-throughput ANI Analysis of 90K Prokaryotic Genomes Reveals Clear Species Boundaries door Chirag Jain, Luis M. Rodriguez‐R, Adam M. Phillippy, Konstantinos T. Konstantinidis, Srinivas Aluru

    Gepubliceerd in 2017
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  9. 9
    High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

    High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries door Chirag Jain, Luis M. Rodriguez‐R, Adam M. Phillippy, Konstantinos T. Konstantinidis, Srinivas Aluru

    Gepubliceerd in 2018
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  10. 10
    Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity

    Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity door Luis M. Rodriguez‐R, Santosh Gunturu, James M. Tiedje, James R. Cole, Konstantinos T. Konstantinidis

    Gepubliceerd in 2018
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  11. 11
    The Reliability of Metagenome-Assembled Genomes (MAGs) in Representing Natural Populations: Insights from Comparing MAGs against Isolate Genomes Derived from the Same Fecal Sample

    The Reliability of Metagenome-Assembled Genomes (MAGs) in Representing Natural Populations: Insights from Comparing MAGs against Isolate Genomes Derived from the Same Fecal Sample door Alexandra Meziti, Luis M. Rodriguez‐R, Janet K. Hatt, Ángela Peña, Karen Lévy, Konstantinos T. Konstantinidis

    Gepubliceerd in 2021
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  12. 12
    How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?

    How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity? door Luis M. Rodriguez‐R, Juan C. Castro, Nikos C. Kyrpides, James R. Cole, James M. Tiedje, Konstantinos T. Konstantinidis

    Gepubliceerd in 2018
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  13. 13
    The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level

    The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level door Luis M. Rodriguez‐R, Santosh Gunturu, William T. Harvey, Ramon Rosselló‐Móra, James M. Tiedje, James R. Cole, Konstantinos T. Konstantinidis

    Gepubliceerd in 2018
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  14. 14
    Why and how to use the SeqCode

    Why and how to use the SeqCode door William B. Whitman, Maria Chuvochina, Brian P. Hedlund, Konstantinos T. Konstantinidis, Marike Palmer, Luis M. Rodriguez‐R, Iain C. Sutcliffe, Fengping Wang

    Gepubliceerd in 2024
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  15. 15
    Biofilms on Hospital Shower Hoses: Characterization and Implications for Nosocomial Infections

    Biofilms on Hospital Shower Hoses: Characterization and Implications for Nosocomial Infections door Maria J. Soto-Girón, Luis M. Rodriguez‐R, Chengwei Luo, Michael Elk, Hodon Ryu, Jill Hoelle, Jorge W. Santo Domingo, Konstantinos T. Konstantinidis

    Gepubliceerd in 2016
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  16. 16
    Metagenomics as a Public Health Risk Assessment Tool in a Study of Natural Creek Sediments Influenced by Agricultural and Livestock Runoff: Potential and Limitations

    Metagenomics as a Public Health Risk Assessment Tool in a Study of Natural Creek Sediments Influenced by Agricultural and Livestock Runoff: Potential and Limitations door Brittany Suttner, Eric R. Johnston, Luis H. Orellana, Luis M. Rodriguez‐R, Janet K. Hatt, Diana Carychao, Michelle Qiu Carter, Michael B. Cooley, Konstantinos T. Konstantinidis

    Gepubliceerd in 2020
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  17. 17
    Towards estimating the number of strains that make up a natural bacterial population

    Towards estimating the number of strains that make up a natural bacterial population door Tomeu Viver, Roth E. Conrad, Luis M. Rodriguez‐R, Ana S. Ramírez, Stephanus N. Venter, Jairo Rocha-Cárdenas, Mercè Llabrés, Rudolf Amann, Konstantinos T. Konstantinidis, Ramon Rosselló‐Móra

    Gepubliceerd in 2024
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  18. 18
    Genomic Characterization and Copy Number Variation of <i>Bacillus anthracis</i> Plasmids pXO1 and pXO2 in a Historical Collection of 412 Strains

    Genomic Characterization and Copy Number Variation of <i>Bacillus anthracis</i> Plasmids pXO1 and pXO2 in a Historical Collection of 412 Strains door Ángela Peña, Luis M. Rodriguez‐R, Chung K. Marston, Jay E. Gee, Christopher A. Gulvik, Cari B. Kolton, Elke Saile, Michael Frace, Alex R. Hoffmaster, Konstantinos T. Konstantinidis

    Gepubliceerd in 2018
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  19. 19
    An ANI gap within bacterial species that advances the definitions of intra-species units

    An ANI gap within bacterial species that advances the definitions of intra-species units door Luis M. Rodriguez‐R, Roth E. Conrad, Tomeu Viver, Dorian J. Feistel, Blake G. Lindner, Stephanus N. Venter, Luis H. Orellana, Rudolf Amann, Ramon Rosselló‐Móra, Konstantinos T. Konstantinidis

    Gepubliceerd in 2023
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  20. 20
    Development of the SeqCode: A proposed nomenclatural code for uncultivated prokaryotes with DNA sequences as type

    Development of the SeqCode: A proposed nomenclatural code for uncultivated prokaryotes with DNA sequences as type door William B. Whitman, Maria Chuvochina, Brian P. Hedlund, Philip Hugenholtz, Konstantinos T. Konstantinidis, Alison E. Murray, Marike Palmer, Donovan H. Parks, Alexander J. Probst, Anna‐Louise Reysenbach, Luis M. Rodriguez‐R, Ramon Rosselló‐Móra, Iain C. Sutcliffe, Stephanus N. Venter

    Gepubliceerd in 2022
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