Search Results - Joshua M. Stuart

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  1. 1
    ONE-CLASS DETECTION OF CELL STATES IN TUMOR SUBTYPES

    ONE-CLASS DETECTION OF CELL STATES IN TUMOR SUBTYPES by Artem Sokolov, Evan Paull, Joshua M. Stuart

    Published 2015
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  2. 2
    PRINCIPAL COMPONENTS ANALYSIS TO SUMMARIZE MICROARRAY EXPERIMENTS: APPLICATION TO SPORULATION TIME SERIES

    PRINCIPAL COMPONENTS ANALYSIS TO SUMMARIZE MICROARRAY EXPERIMENTS: APPLICATION TO SPORULATION TIME SERIES by Soumya Raychaudhuri, Joshua M. Stuart, Russ B. Altman

    Published 1999
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  3. 3
    Molecular Network and Chromosomal Clustering of Genes Involved in Synaptic Plasticity in the Hippocampus

    Molecular Network and Chromosomal Clustering of Genes Involved in Synaptic Plasticity in the Hippocampus by Chang Sin Park, Ruomu Gong, Joshua M. Stuart, Shaojun Tang

    Published 2006
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  4. 4
    A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules

    A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim

    Published 2003
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  5. 5
    VEGA is an interpretable generative model for inferring biological network activity in single-cell transcriptomics

    VEGA is an interpretable generative model for inferring biological network activity in single-cell transcriptomics by Lucas Seninge, Ioannis N. Anastopoulos, Hongxu Ding, Joshua M. Stuart

    Published 2021
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  6. 6
    Pathway-Based Genomics Prediction using Generalized Elastic Net

    Pathway-Based Genomics Prediction using Generalized Elastic Net by Artem Sokolov, Yichao Li, Evan Paull, Robert Baertsch, Joshua M. Stuart

    Published 2016
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  7. 7
    Toward better benchmarking: challenge-based methods assessment in cancer genomics

    Toward better benchmarking: challenge-based methods assessment in cancer genomics by Paul C. Boutros, Jake Lin, Joshua M. Stuart, Andrea Califano, Gustavo Stolovitzky

    Published 2014
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  8. 8
    Pan-cancer analysis of whole genomes

    Pan-cancer analysis of whole genomes by Peter J. Campbell, Gaddy Getz, Joshua M. Stuart, Jan O. Korbel, Lincoln Stein

    Published 2017
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  9. 9
    Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE)

    Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE) by Evan Paull, Yichao Li, Mario Niepel, Peter K. Sorger, David Haussler, Joshua M. Stuart

    Published 2013
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  10. 10
    Differential Expression of Novel Potential Regulators in Hematopoietic Stem Cells

    Differential Expression of Novel Potential Regulators in Hematopoietic Stem Cells by E. Camilla Forsberg, Susan Prohaska, Sol Katzman, Garrett C. Heffner, Joshua M. Stuart, Irving L. Weissman

    Published 2005
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  11. 11
    Dual-specificity phosphatases 2: surprising positive effect at the molecular level and a potential biomarker of diseases

    Dual-specificity phosphatases 2: surprising positive effect at the molecular level and a potential biomarker of diseases by Wenyi Wei, Yan Jiao, Arnold E. Postlethwaite, Joshua M. Stuart, Y Wang, Dianjun Sun, Weikuan Gu

    Published 2012
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  12. 12
    RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection

    RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection by Amie Radenbaugh, Singer Ma, Adam D. Ewing, Joshua M. Stuart, Jun Li, Jingchun Zhu, David Haussler

    Published 2014
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  13. 13
    “Function-First” Lead Discovery: Mode of Action Profiling of Natural Product Libraries Using Image-Based Screening

    “Function-First” Lead Discovery: Mode of Action Profiling of Natural Product Libraries Using Image-Based Screening by Christopher J. Schulze, Walter M. Bray, Marcos H. Woerhmann, Joshua M. Stuart, R. Scott Lokey, Roger G. Linington

    Published 2013
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  14. 14
    Molecular Signatures of Quiescent, Mobilized and Leukemia-Initiating Hematopoietic Stem Cells

    Molecular Signatures of Quiescent, Mobilized and Leukemia-Initiating Hematopoietic Stem Cells by E. Camilla Forsberg, Emmanuelle Passegué, Susan Prohaska, Amy J. Wagers, Martina Koeva, Joshua M. Stuart, Irving L. Weissman

    Published 2010
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  15. 15
    Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

    Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM by Charles Vaske, Stephen C. Benz, Zack Sanborn, Dent Earl, Christopher Szeto, Jingchun Zhu, David Haussler, Joshua M. Stuart

    Published 2010
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  16. 16
    A global analysis of genetic interactions in Caenorhabditis elegans

    A global analysis of genetic interactions in Caenorhabditis elegans by Alexandra B. Byrne, Matthew T. Weirauch, Victoria Wong, Martina Koeva, Scott J. Dixon, Joshua M. Stuart, Peter J. Roy

    Published 2007
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  17. 17
    Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas

    Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas by Larsson Omberg, Kyle Ellrott, Yuan Yuan, Cyriac Kandoth, Chris Wong, Michael Kellen, Stephen Friend, Joshua M. Stuart, Han Liang, Jake Lin

    Published 2013
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  18. 18
    The Cancer Genome Atlas Pan-Cancer analysis project

    The Cancer Genome Atlas Pan-Cancer analysis project by John N. Weinstein, Jun Li, Gordon B. Mills, Kenna Shaw, Brad Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M. Stuart

    Published 2013
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  19. 19
    VisANT 3.0: new modules for pathway visualization, editing, prediction and construction

    VisANT 3.0: new modules for pathway visualization, editing, prediction and construction by Zhenjun Hu, David Ng, Takuji Yamada, Chunnuan Chen, Shuichi Kawashima, Joe Mellor, Bolan Linghu, Minoru Kanehisa, Joshua M. Stuart, Charles DeLisi

    Published 2007
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  20. 20
    A basal stem cell signature identifies aggressive prostate cancer phenotypes

    A basal stem cell signature identifies aggressive prostate cancer phenotypes by B. Smith, Artem Sokolov, Vladislav Uzunangelov, Robert Baertsch, Yulia Newton, Kiley Graim, Colleen Mathis, Donghui Cheng, Joshua M. Stuart, Owen N. Witte

    Published 2015
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