Search Results - Joshua B. Plotkin

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  1. 1
    Inferring fitness landscapes by regression produces biased estimates of epistasis

    Inferring fitness landscapes by regression produces biased estimates of epistasis by Jakub Otwinowski, Joshua B. Plotkin

    Published 2014
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  2. 2
    Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus

    Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus by Joshua B. Plotkin, Jonathan Dushoff

    Published 2003
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  3. 3
    The Population Genetics of dN/dS

    The Population Genetics of dN/dS by Sergey Kryazhimskiy, Joshua B. Plotkin

    Published 2008
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  4. 4
    Synonymous but not the same: the causes and consequences of codon bias

    Synonymous but not the same: the causes and consequences of codon bias by Joshua B. Plotkin, Grzegorz Kudla

    Published 2010
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  5. 5
    SELECTION BIASES THE PREVALENCE AND TYPE OF EPISTASIS ALONG ADAPTIVE TRAJECTORIES

    SELECTION BIASES THE PREVALENCE AND TYPE OF EPISTASIS ALONG ADAPTIVE TRAJECTORIES by Jeremy A. Draghi, Joshua B. Plotkin

    Published 2013
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  6. 6
    Redundancy, antiredundancy, and the robustness of genomes

    Redundancy, antiredundancy, and the robustness of genomes by David C. Krakauer, Joshua B. Plotkin

    Published 2002
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  7. 7
    Using protein complexes to predict phenotypic effects of gene mutation

    Using protein complexes to predict phenotypic effects of gene mutation by Hunter B. Fraser, Joshua B. Plotkin

    Published 2007
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  8. 8
    The dynamics of adaptation on correlated fitness landscapes

    The dynamics of adaptation on correlated fitness landscapes by Sergey Kryazhimskiy, Gašper Tkačik, Joshua B. Plotkin

    Published 2009
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  9. 9
    Host-Pathogen Coevolution and the Emergence of Broadly Neutralizing Antibodies in Chronic Infections

    Host-Pathogen Coevolution and the Emergence of Broadly Neutralizing Antibodies in Chronic Infections by Armita Nourmohammad, Jakub Otwinowski, Joshua B. Plotkin

    Published 2016
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  10. 10
    Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum

    Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum by Joshua B. Plotkin, Jonathan Dushoff, Hunter B. Fraser

    Published 2004
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  11. 11
    Dynamics of Neutral and Selected Alleles When the Offspring Distribution Is Skewed

    Dynamics of Neutral and Selected Alleles When the Offspring Distribution Is Skewed by Ricky Der, Charles L. Epstein, Joshua B. Plotkin

    Published 2012
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  12. 12
    Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus

    Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus by Joshua B. Plotkin, Jonathan Dushoff, Simon A. Levin

    Published 2002
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  13. 13
    Tissue-specific codon usage and the expression of human genes

    Tissue-specific codon usage and the expression of human genes by Joshua B. Plotkin, Harlan Robins, Arnold J. Levine

    Published 2004
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  14. 14
    Identifying Signatures of Selection in Genetic Time Series

    Identifying Signatures of Selection in Genetic Time Series by Alison F. Feder, Sergey Kryazhimskiy, Joshua B. Plotkin

    Published 2013
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  15. 15
    Why Transcription Factor Binding Sites Are Ten Nucleotides Long

    Why Transcription Factor Binding Sites Are Ten Nucleotides Long by Alexander J. Stewart, Sridhar Hannenhalli, Joshua B. Plotkin

    Published 2012
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  16. 16
    Some Consequences of Demographic Stochasticity in Population Genetics

    Some Consequences of Demographic Stochasticity in Population Genetics by Todd L. Parsons, Christopher Quince, Joshua B. Plotkin

    Published 2010
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  17. 17
    Contingency and entrenchment in protein evolution under purifying selection

    Contingency and entrenchment in protein evolution under purifying selection by Premal Shah, David M. McCandlish, Joshua B. Plotkin

    Published 2015
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  18. 18
    Epistasis and the Dynamics of Reversion in Molecular Evolution

    Epistasis and the Dynamics of Reversion in Molecular Evolution by David M. McCandlish, Premal Shah, Joshua B. Plotkin

    Published 2016
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  19. 19
    Inferring the shape of global epistasis

    Inferring the shape of global epistasis by Jakub Otwinowski, David M. McCandlish, Joshua B. Plotkin

    Published 2018
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  20. 20
    Coding-Sequence Determinants of Gene Expression in <i>Escherichia coli</i>

    Coding-Sequence Determinants of Gene Expression in <i>Escherichia coli</i> by Grzegorz Kudla, Andrew W. Murray, David Tollervey, Joshua B. Plotkin

    Published 2009
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