Search Results - Jesse R. Dixon

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  1. 1
    Chromatin Domains: The Unit of Chromosome Organization

    Chromatin Domains: The Unit of Chromosome Organization by Jesse R. Dixon, David U. Gorkin, Bing Ren

    Published 2016
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  2. 2
    Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing

    Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing by Siddarth Selvaraj, Jesse R. Dixon, Vikas Bansal, Bing Ren

    Published 2013
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  3. 3
    Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity

    Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity by Zhi Liu, Dong-Sung Lee, Yuqiong Liang, Ye Zheng, Jesse R. Dixon

    Published 2023
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  4. 4
    Dynamic regulation of histone modifications and long-range chromosomal interactions during postmitotic transcriptional reactivation

    Dynamic regulation of histone modifications and long-range chromosomal interactions during postmitotic transcriptional reactivation by Hyeseon Kang, Maxim N. Shokhirev, Zhichao Xu, Sahaana Chandran, Jesse R. Dixon, Martin W. Hetzer

    Published 2020
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  5. 5
    Bayesian Inference of Spatial Organizations of Chromosomes

    Bayesian Inference of Spatial Organizations of Chromosomes by Ming Hu, Ke Deng, Zhaohui Qin, Jesse R. Dixon, Siddarth Selvaraj, Jennifer Fang, Bing Ren, Jun S. Liu

    Published 2013
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  6. 6
    CRISPR Reveals a Distal Super-Enhancer Required for Sox2 Expression in Mouse Embryonic Stem Cells

    CRISPR Reveals a Distal Super-Enhancer Required for Sox2 Expression in Mouse Embryonic Stem Cells by Yan Li, Chloe M. Rivera, Haruhiko Ishii, Fulai Jin, Siddarth Selvaraj, Ah Young Lee, Jesse R. Dixon, Bing Ren

    Published 2014
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  7. 7
    Topological domains in mammalian genomes identified by analysis of chromatin interactions

    Topological domains in mammalian genomes identified by analysis of chromatin interactions by Jesse R. Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S. Liu, Bing Ren

    Published 2012
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  8. 8
    Robust single-cell Hi-C clustering by convolution- and random-walk–based imputation

    Robust single-cell Hi-C clustering by convolution- and random-walk–based imputation by Jingtian Zhou, Jianzhu Ma, Yusi Chen, Chuankai Cheng, Bokan Bao, Jian Peng, Terrence J. Sejnowski, Jesse R. Dixon, Joseph R. Ecker

    Published 2019
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  9. 9
    A non-canonical BRD9-containing BAF chromatin remodeling complex regulates naive pluripotency in mouse embryonic stem cells

    A non-canonical BRD9-containing BAF chromatin remodeling complex regulates naive pluripotency in mouse embryonic stem cells by Jovylyn Gatchalian, Shivani Malik, Josephine Ho, Dong-Sung Lee, Timothy W. R. Kelso, Maxim N. Shokhirev, Jesse R. Dixon, Diana C. Hargreaves

    Published 2018
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  10. 10
    Involvement of a Mitochondrial Phosphatase in the Regulation of ATP Production and Insulin Secretion in Pancreatic β Cells

    Involvement of a Mitochondrial Phosphatase in the Regulation of ATP Production and Insulin Secretion in Pancreatic β Cells by David J. Pagliarini, Sandra E. Wiley, Michelle E. Kimple, Jesse R. Dixon, Patrick Kelly, Carolyn A. Worby, Patrick J. Casey, Jack E. Dixon

    Published 2005
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  11. 11
    A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening

    A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening by Yarui Diao, Bin Li, Zhipeng Meng, Inkyung Jung, Ah Young Lee, Jesse R. Dixon, Lenka Maliskova, Kun‐Liang Guan, Yin Shen, Bing Ren

    Published 2016
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  12. 12
    A high-resolution map of the three-dimensional chromatin interactome in human cells

    A high-resolution map of the three-dimensional chromatin interactome in human cells by Fulai Jin, Yan Li, Jesse R. Dixon, Siddarth Selvaraj, Zhen Ye, Ah Young Lee, Chia-An Yen, Anthony D. Schmitt, Celso A. Espinoza, Bing Ren

    Published 2013
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  13. 13
    Bcl-6 and NF-κB cistromes mediate opposing regulation of the innate immune response

    Bcl-6 and NF-κB cistromes mediate opposing regulation of the innate immune response by Grant D. Barish, Ruth T. Yu, Malith Karunasiri, Corinne B. Ocampo, Jesse R. Dixon, Christopher Benner, Alexander L. Dent, Rajendra K. Tangirala, Ronald M. Evans

    Published 2010
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  14. 14
    A map of the cis-regulatory sequences in the mouse genome

    A map of the cis-regulatory sequences in the mouse genome by Yin Shen, Feng Yue, David McCleary, Zhen Ye, Lee Edsall, Samantha Kuan, Ulrich Wagner, Jesse R. Dixon, Leonard Lee, Victor V. Lobanenkov, Bing Ren

    Published 2012
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  15. 15
    Simultaneous profiling of 3D genome structure and DNA methylation in single human cells

    Simultaneous profiling of 3D genome structure and DNA methylation in single human cells by Dong-Sung Lee, Chongyuan Luo, Jingtian Zhou, Sahaana Chandran, Angeline Rivkin, Anna Bartlett, Joseph R. Nery, Conor Fitzpatrick, Carolyn O’Connor, Jesse R. Dixon, Joseph R. Ecker

    Published 2019
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  16. 16
    Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells

    Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells by Naoki Kubo, Haruhiko Ishii, David U. Gorkin, Franz Meitinger, Xiong Xiong, Rongxin Fang, Tristin Liu, Zhen Ye, Bin Li, Jesse R. Dixon, Arshad Desai, Huimin Zhao, Bing Ren

    Published 2017
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  17. 17
    Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation

    Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation by Naoki Kubo, Haruhiko Ishii, Xiong Xiong, Simona Bianco, Franz Meitinger, Rong Hu, James D. Hocker, Mattia Conte, David U. Gorkin, Miao Yu, Bin Li, Jesse R. Dixon, Ming Hu, Mario Nicodemi, Huimin Zhao, Bing Ren

    Published 2021
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  18. 18
    Chromatin architecture reorganization during stem cell differentiation

    Chromatin architecture reorganization during stem cell differentiation by Jesse R. Dixon, Inkyung Jung, Siddarth Selvaraj, Yin Shen, Jessica Antosiewicz‐Bourget, Ah Young Lee, Zhen Ye, Audrey Kim, Nisha Rajagopal, Wei Xie, Yarui Diao, Jing Liang, Huimin Zhao, Victor V. Lobanenkov, Joseph R. Ecker, James A. Thomson, Bing Ren

    Published 2015
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  19. 19
    Structural variants drive context-dependent oncogene activation in cancer

    Structural variants drive context-dependent oncogene activation in cancer by Zhichao Xu, Dong-Sung Lee, Sahaana Chandran, Victoria T. Le, Rosalind Bump, Jean Yasis, Sofia Dallarda, Samantha Marcotte, Benjamin Clock, Nicholas K. Haghani, Chae Yun Cho, Kadir C. Akdemir, Sélène T. Tyndale, P. Andrew Futreal, Graham McVicker, Geoffrey M. Wahl, Jesse R. Dixon

    Published 2022
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  20. 20
    Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis

    Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis by Catia Attanasio, Alex S. Nord, Yiwen Zhu, Matthew J. Blow, Simon C. Biddie, Eric M. Mendenhall, Jesse R. Dixon, Crystal Wright, Roya Hosseini, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Veena Afzal, Bing Ren, B Bernstein, Edward M. Rubin, Axel Visel, L Pennacchio

    Published 2014
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