Risultati della ricerca - Glenn Hickey

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  1. 1
    SPR Distance Computation for <i>Unrooted</i> Trees

    SPR Distance Computation for <i>Unrooted</i> Trees di Glenn Hickey, Frank Dehne, Andrew Rau‐Chaplin, Christian Blouin

    Pubblicazione 2008
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  2. 2
    HAL: a hierarchical format for storing and analyzing multiple genome alignments

    HAL: a hierarchical format for storing and analyzing multiple genome alignments di Glenn Hickey, Benedict Paten, Dent Earl, Daniel R. Zerbino, David Haussler

    Pubblicazione 2013
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  3. 3
    Superbubbles, Ultrabubbles, and Cacti

    Superbubbles, Ultrabubbles, and Cacti di Benedict Paten, Jordan M. Eizenga, Yohei M. Rosen, Adam M. Novak, Erik Garrison, Glenn Hickey

    Pubblicazione 2018
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  4. 4
    Sequence tube maps: making graph genomes intuitive to commuters

    Sequence tube maps: making graph genomes intuitive to commuters di Wolfgang Beyer, Adam M. Novak, Glenn Hickey, Jeffrey Chan, Vanessa Y. Tan, Benedict Paten, Daniel R. Zerbino

    Pubblicazione 2019
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  5. 5
    Pangenome Graph Construction from Genome Alignment with Minigraph-Cactus

    Pangenome Graph Construction from Genome Alignment with Minigraph-Cactus di Glenn Hickey, Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao, Tobias Marschall, Heng Li, Benedict Paten

    Pubblicazione 2022
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  6. 6
    Building a Pan-Genome Reference for a Population

    Building a Pan-Genome Reference for a Population di Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, W. James Kent, David Haussler, Benedict Paten

    Pubblicazione 2015
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  7. 7
    Genotyping structural variants in pangenome graphs using the vg toolkit

    Genotyping structural variants in pangenome graphs using the vg toolkit di Glenn Hickey, David N. Heller, Jean Monlong, Jonas A. Sibbesen, Jouni Sirén, Jordan M. Eizenga, Eric T. Dawson, Erik Garrison, Adam M. Novak, Benedict Paten

    Pubblicazione 2020
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  8. 8
    Variation graph toolkit improves read mapping by representing genetic variation in the reference

    Variation graph toolkit improves read mapping by representing genetic variation in the reference di Erik Garrison, Jouni Sirén, Adam M. Novak, Glenn Hickey, Jordan M. Eizenga, Eric T. Dawson, William E. Jones, Shilpa Garg, Charles Markello, Michael F. Lin, Benedict Paten, Richard Durbin

    Pubblicazione 2018
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  9. 9
    Pangenome Graphs

    Pangenome Graphs di Jordan M. Eizenga, Adam M. Novak, Jonas A. Sibbesen, Simon Heumos, Ali Ghaffaari, Glenn Hickey, Xian Chang, Josiah Seaman, Robin Rounthwaite, Jana Ebler, Mikko Rautiainen, Shilpa Garg, Benedict Paten, Tobias Marschall, Jouni Sirén, Erik Garrison

    Pubblicazione 2020
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  10. 10
    A region of suppressed recombination misleads neoavian phylogenomics

    A region of suppressed recombination misleads neoavian phylogenomics di Siavash Mirarab, Iker Rivas-González, Shaohong Feng, Josefin Stiller, Qi Fang, Uyen Mai, Glenn Hickey, Guangji Chen, Nadolina Brajuka, Olivier Fédrigo, Giulio Formenti, Jochen B. W. Wolf, Kerstin Howe, Agostinho Antunes, Mikkel Heide Schierup, Benedict Paten, Erich D. Jarvis, Guojie Zhang, Edward L. Braun

    Pubblicazione 2024
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  11. 11
    Pangenomics enables genotyping of known structural variants in 5202 diverse genomes

    Pangenomics enables genotyping of known structural variants in 5202 diverse genomes di Jouni Sirén, Jean Monlong, Xian Chang, Adam M. Novak, Jordan M. Eizenga, Charles Markello, Jonas A. Sibbesen, Glenn Hickey, Pi-Chuan Chang, Andrew Carroll, Namrata Gupta, Stacey Gabriel, Thomas W. Blackwell, Aakrosh Ratan, Kent D. Taylor, Stephen S. Rich, Jerome I. Rotter, David Haussler, Erik Garrison, Benedict Paten

    Pubblicazione 2021
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  12. 12
    Progressive Cactus is a multiple-genome aligner for the thousand-genome era

    Progressive Cactus is a multiple-genome aligner for the thousand-genome era di Joel Armstrong, Glenn Hickey, Mark Diekhans, Ian T. Fiddes, Adam M. Novak, Alden Deran, Qi Fang, Duo Xie, Shaohong Feng, Josefin Stiller, Diane P. Genereux, Jeremy Johnson, Voichita D. Marinescu, Jessica Alföldi, Robert S. Harris, Kerstin Lindblad‐Toh, David Haussler, Elinor K. Karlsson, Erich D. Jarvis, Guojie Zhang, Benedict Paten

    Pubblicazione 2020
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  13. 13
    Alignathon: a competitive assessment of whole-genome alignment methods

    Alignathon: a competitive assessment of whole-genome alignment methods di Dent Earl, Ngan Nguyen, Glenn Hickey, Robert S. Harris, Stephen Fitzgerald, Kathryn Beal, Igor Seledtsov, В. В. Молодцов, Brian J. Raney, Hiram Clawson, Jaebum Kim, Carsten Kemena, Jia‐Ming Chang, Ionas Erb, Alexander Poliakov, Minmei Hou, Javier Herrero, William Kent, Victor Solovyev, Aaron E. Darling, Jian Ma, Cédric Notredame, Michael Brudno, Inna Dubchak, David Haussler, Benedict Paten

    Pubblicazione 2014
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  14. 14
    Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling

    Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling di Edward S. Rice, Satomi Kohno, John St. John, Son Pham, Jonathan M. Howard, Liana F. Lareau, Brendan L. O’Connell, Glenn Hickey, Joel Armstrong, Alden Deran, Ian T. Fiddes, Roy N. Platt, Cathy Gresham, Fiona M. McCarthy, Colin Kern, David Haan, Tan Phan, Carl J. Schmidt, Jeremy R. Sanford, David A. Ray, Benedict Paten, Louis J. Guillette, Richard E. Green

    Pubblicazione 2017
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  15. 15
    Genome Graphs

    Genome Graphs di Adam M. Novak, Glenn Hickey, Erik Garrison, Sean Blum, Abram Connelly, Alexander Dilthey, Jordan M. Eizenga, M. A. Saleh Elmohamed, Sally K. Guthrie, André Kahles, Stephen Keenan, Jerome Kelleher, Deniz Kural, Heng Li, Michael F. Lin, Karen H. Miga, Nancy Ouyang, Goran Rakočević, Maciek Smuga-Otto, Alexander Wait Zaranek, Richard Durbin, Gil McVean, David Haussler, Benedict Paten

    Pubblicazione 2017
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  16. 16
    The UCSC Genome Browser database: 2024 update

    The UCSC Genome Browser database: 2024 update di Brian J. Raney, Galt P Barber, Anna Benet‐Pagès, Jonathan D. Casper, Hiram Clawson, Melissa Cline, Mark Diekhans, Clayton M. Fischer, Jairo Navarro Gonzalez, Glenn Hickey, Angie S. Hinrichs, Robert M. Kuhn, Brian T. Lee, Christopher M. Lee, Philippe Le Mercier, Karen H. Miga, Luis R Nassar, Parisa Nejad, Benedict Paten, Gerardo Perez, Daniel Schmelter, Matthew L Speir, Brittney Wick, Ann S. Zweig, David Haussler, W. James Kent, Maximilian Haeussler

    Pubblicazione 2023
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  17. 17
    The UCSC Genome Browser database: 2015 update

    The UCSC Genome Browser database: 2015 update di Kate R. Rosenbloom, Joel Armstrong, Galt P Barber, Jonathan D. Casper, Hiram Clawson, Mark Diekhans, Timothy R. Dreszer, Pauline A. Fujita, Luvina Guruvadoo, Maximilian Haeussler, Rachel Harte, Steve Heitner, Glenn Hickey, Angie S. Hinrichs, Robert Hubley, Donna Karolchik, Katrina Learned, Brian T. Lee, Chin H. Li, Karen H. Miga, Ngan Nguyen, Benedict Paten, Brian J. Raney, Arian F. A. Smit, Matthew L Speir, Ann S. Zweig, David Haussler, Robert M. Kuhn, W. James Kent

    Pubblicazione 2014
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  18. 18
    Adaptive radiation and social evolution of the ants

    Adaptive radiation and social evolution of the ants di Joel Vizueta, Zijun Xiong, Guo Ding, Rasmus Larsen, Hao Ran, Qionghua Gao, Josefin Stiller, Wei Dai, Wei Jiang, Jie Zhao, Chunxue Guo, Xiafang Zhang, Dashuang Zuo, Wenjiang Zhong, Morten Schiøtt, Chengyuan Liu, Hailin Zhang, Xueqin Dai, Ignasi Andreu, Yue Shi, Sandra Tretter, Ding He, Shubham Gautam, Zelin Li, Glenn Hickey, Aniek B. F. Ivens, Marie-Pierre Meurville, Francisco Hita Garcia, Jamie M. Kass, Benoît Guénard, Corrie S. Moreau, Benedict Paten, Adria C. LeBoeuf, Evan P. Economo, Michel Chapuisat, Jonathan Z. Shik, Philip S. Ward, Jürgen Heınze, Ted R. Schultz, Qiye Li, Robert R. Dunn, Nathan J. Sanders, Weiwei Liu, Lukas Schrader, Jacobus J. Boomsma, Guojie Zhang

    Pubblicazione 2025
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  19. 19
    A Draft Human Pangenome Reference

    A Draft Human Pangenome Reference di Wen‐Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Glenn Hickey, Shuangjia Lu, Julian Lucas, Jean Monlong, Haley Abel, Silvia Buonaiuto, Xian Chang, Haoyu Cheng, Justin Chu, Vincenza Colonna, Jordan M. Eizenga, Xiaowen Feng, Christian Fischer, Robert S. Fulton, Shilpa Garg, Cristian Groza, Andrea Guarracino, William T. Harvey, Simon Heumos, Kerstin Howe, Miten Jain, Tsung-Yu Lu, Charles Markello, Fergal J. Martin, Matthew W. Mitchell, Katherine M. Munson, Moses Njagi Mwaniki, Adam M. Novak, Hugh E. Olsen, Trevor Pesout, David Porubský, Pjotr Prins, Jonas A. Sibbesen, Chad Tomlinson, Flavia Villani, Mitchell R. Vollger, Guillaume Bourque, Mark Chaisson, Paul Flicek, Adam M. Phillippy, Justin M. Zook, Evan E. Eichler, David Haussler, Erich D. Jarvis, Karen H. Miga, Ting Wang, Erik Garrison, Tobias Marschall, Ira M. Hall, Heng Li, Benedict Paten

    Pubblicazione 2022
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  20. 20
    Identification of constrained sequence elements across 239 primate genomes

    Identification of constrained sequence elements across 239 primate genomes di Lukas F. K. Kuderna, Jacob C. Ulirsch, Sabrina Mohd Rashid, Mohamed Ameen, Laksshman Sundaram, Glenn Hickey, Anthony J. Cox, Hong Gao, Arvind Kumar, François Aguet, Matthew J. Christmas, Hiram Clawson, Maximilian Haeussler, Mareike C. Janiak, Martin Kuhlwilm, Joseph D. Orkin, Thomas Bataillon, Shivakumara Manu, Alejandro Valenzuela, Juraj Bergman, Marjolaine Rouselle, Felipe Ennes Silva, Lídia Águeda, Julie Blanc, Marta Gut, Dorien de Vries, Ian Goodhead, R. Alan Harris, Muthuswamy Raveendran, Axel Jensen, Idriss S. Chuma, Julie E. Horvath, Christina Hvilsom, David Juan, Peter Frandsen, Joshua G. Schraiber, Fabiano Rodrigues de Melo, Fabrício Bertuol, Hazel Byrne, Iracilda Sampaio, Izeni Pires Farias, João Valsecchi, Malu Messias, Maria Nazareth Ferreira da Silva, Mihir Trivedi, Rogério Vieira Rossi, Tomas Hrbek, Nicole Andriaholinirina, C. Rabarivola, Alphonse Zaramody, Clifford J. Jolly, Jane E. Phillips‐Conroy, Gregory K. Wilkerson, Christian R. Abee, Joe H. Simmons, Eduardo Fernández‐Duque, Sree Kanthaswamy, Fekadu Shiferaw, Dong‐Dong Wu, Long Zhou, Yong Shao, Guojie Zhang, Julius D. Keyyu, Sascha Knauf, Minh Đức Lê, Esther Lizano, Stefan Merker, Arcadi Navarro, Tilo Nadler, Chiea Chuen Khor, Jessica Lee, Patrick Tan, Weng Khong Lim, Andrew C. Kitchener, Dietmar Zinner, Marta Gut, Amanda Melin, Katerina Guschanski, Mikkel Heide Schierup, Robin M. D. Beck, Ioannis Karakikes, Ke Wang, Govindhaswamy Umapathy, Christian Roos, Jean P. Boubli, Adam Siepel, Anshul Kundaje, Benedict Paten, Kerstin Lindblad‐Toh, Jeffrey Rogers, Tomàs Marquès‐Bonet, Kyle Kai‐How Farh

    Pubblicazione 2023
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