Search Results - Gintaras Deikus

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  1. 1
    Role of Bacillus subtilis RNase J1 Endonuclease and 5′-Exonuclease Activities in trp Leader RNA Turnover

    Role of Bacillus subtilis RNase J1 Endonuclease and 5′-Exonuclease Activities in trp Leader RNA Turnover by Gintaras Deikus, Ciarán Condon, David H. Bechhofer

    Published 2008
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  2. 2
    Global analysis of <scp>mRNA</scp> decay intermediates in <scp><i>B</i></scp><i>acillus subtilis</i> wild‐type and polynucleotide phosphorylase‐deletion strains

    Global analysis of <scp>mRNA</scp> decay intermediates in <scp><i>B</i></scp><i>acillus subtilis</i> wild‐type and polynucleotide phosphorylase‐deletion strains by Bo Liu, Gintaras Deikus, Anna C. Bree, Sylvain Durand, Daniel B. Kearns, David H. Bechhofer

    Published 2014
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  3. 3
    Bacillus subtilis polynucleotide phosphorylase 3′-to-5′ DNase activity is involved in DNA repair

    Bacillus subtilis polynucleotide phosphorylase 3′-to-5′ DNase activity is involved in DNA repair by Paula P. Cárdenas, Begoña Carrasco, Humberto Sánchez, Gintaras Deikus, David H. Bechhofer, Juan C. Alonso

    Published 2009
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  4. 4
    Critical assessment of DNA adenine methylation in eukaryotes using quantitative deconvolution

    Critical assessment of DNA adenine methylation in eukaryotes using quantitative deconvolution by Yimeng Kong, Lei Cao, Gintaras Deikus, Yu Fan, Edward A. Mead, Weiyi Lai, Yizhou Zhang, Raymund L. Yong, Robert Sebra, Hailin Wang, Xue‐Song Zhang, Gang Fang

    Published 2022
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  5. 5
    Characterization of the immunoglobulin lambda chain locus from diverse populations reveals extensive genetic variation

    Characterization of the immunoglobulin lambda chain locus from diverse populations reveals extensive genetic variation by William S. Gibson, Oscar L. Rodriguez, Kaitlyn Shields, Catherine A. Silver, Abdullah Dorgham, Matthew Emery, Gintaras Deikus, Robert Sebra, Evan E. Eichler, Ali Bashir, Melissa Smith, Corey T. Watson

    Published 2022
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  6. 6
    A physical and genetic map of <i>Cannabis sativa</i> identifies extensive rearrangements at the <i>THC/CBD acid synthase</i> loci

    A physical and genetic map of <i>Cannabis sativa</i> identifies extensive rearrangements at the <i>THC/CBD acid synthase</i> loci by Kaitlin U. Laverty, Jake Stout, Mitchell J. Sullivan, Hardik Shah, Navdeep Gill, Larry A. Holbrook, Gintaras Deikus, Robert Sebra, Timothy R. Hughes, Jonathan E. Page, Harm van Bakel

    Published 2018
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  7. 7
    Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes

    Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes by John Beaulaurier, Xue‐Song Zhang, Shijia Zhu, Robert Sebra, Chaggai Rosenbluh, Gintaras Deikus, Nan Shen, Diana Munera, Matthew K. Waldor, Andrew Chess, Martin J. Blaser, Eric E. Schadt, Gang Fang

    Published 2015
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  8. 8
    Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation

    Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation by John Beaulaurier, Shijia Zhu, Gintaras Deikus, Ilaria Mogno, Xue‐Song Zhang, Austin G. Davis‐Richardson, R Canepa, Eric W. Triplett, Jeremiah J. Faith, Robert Sebra, Eric E. Schadt, Gang Fang

    Published 2017
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  9. 9
    Mapping and characterizing N6-methyladenine in eukaryotic genomes using single-molecule real-time sequencing

    Mapping and characterizing N6-methyladenine in eukaryotic genomes using single-molecule real-time sequencing by Shijia Zhu, John Beaulaurier, Gintaras Deikus, Tao Wu, Maya Strahl, Ziyang Hao, Guan‐Zheng Luo, James A. Gregory, Andrew Chess, Chuan He, Andrew Xiao, Robert Sebra, Eric E. Schadt, Gang Fang

    Published 2018
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  10. 10
    A Novel Framework for Characterizing Genomic Haplotype Diversity in the Human Immunoglobulin Heavy Chain Locus

    A Novel Framework for Characterizing Genomic Haplotype Diversity in the Human Immunoglobulin Heavy Chain Locus by Oscar L. Rodriguez, William S. Gibson, Tom Parks, Matthew Emery, James Powell, Maya Strahl, Gintaras Deikus, Kathryn Auckland, Evan E. Eichler, Wayne A. Marasco, Robert Sebra, Andrew J. Sharp, Melissa Smith, Ali Bashir, Corey T. Watson

    Published 2020
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  11. 11
    Evolution of hypervirulence by a <scp>MRSA</scp> clone through acquisition of a transposable element

    Evolution of hypervirulence by a <scp>MRSA</scp> clone through acquisition of a transposable element by Meredith A. Benson, Elizabeth A. Ohneck, Chanelle Ryan, Francis Alonzo, Hannah Smith, Apurva Narechania, Sergios‐Orestis Kolokotronis, Sarah W. Satola, Anne‐Catrin Uhlemann, Robert Sebra, Gintaras Deikus, Bo Shopsin, Paul J. Planet, Victor J. Torres

    Published 2014
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  12. 12
    Methicillin-Susceptible, Vancomycin-Resistant<i>Staphylococcus aureus</i>, Brazil

    Methicillin-Susceptible, Vancomycin-Resistant<i>Staphylococcus aureus</i>, Brazil by Diana Panesso, Paul J. Planet, Lorena Díaz, Jean‐Emmanuel Hugonnet, Truc T. Tran, Apurva Narechania, José M. Munita, Sandra Rincón, Lina P Carvajal, Jinnethe Reyes, Alejandra Londoño, Hannah Smith, Robert Sebra, Gintaras Deikus, George M. Weinstock, Barbara E. Murray, Flávia Rossi, Michel Arthur, César A. Arias

    Published 2015
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  13. 13
    FLAIRR-Seq: A Method for Single-Molecule Resolution of Near Full-Length Antibody H Chain Repertoires

    FLAIRR-Seq: A Method for Single-Molecule Resolution of Near Full-Length Antibody H Chain Repertoires by Easton E. Ford, David Tieri, Oscar L. Rodriguez, Nancy Francoeur, Juan Soto, Justin T. Kos, Ayelet Peres, William S. Gibson, Catherine A. Silver, Gintaras Deikus, Elizabeth Hudson, Cassandra Woolley, Noam D. Beckmann, Alexander W. Charney, Thomas C. Mitchell, Gur Yaari, Robert Sebra, Corey T. Watson, Melissa Smith

    Published 2023
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  14. 14
    Parallel Epidemics of Community-Associated Methicillin-Resistant<i>Staphylococcus aureus</i>USA300 Infection in North and South America

    Parallel Epidemics of Community-Associated Methicillin-Resistant<i>Staphylococcus aureus</i>USA300 Infection in North and South America by Paul J. Planet, Lorena Díaz, Sergios‐Orestis Kolokotronis, Apurva Narechania, Jinnethe Reyes, Galen Xing, Sandra Rincón, Hannah Smith, Diana Panesso, Chanelle Ryan, Dylan P. Smith, Manuel Guzmán, Jeannete Zurita, Robert Sebra, Gintaras Deikus, Rathel Nolan, Fred C. Tenover, George M. Weinstock, D. Ashley Robinson, César A. Arias

    Published 2015
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  15. 15
    Genome Plasticity of <i>agr</i> -Defective Staphylococcus aureus during Clinical Infection

    Genome Plasticity of <i>agr</i> -Defective Staphylococcus aureus during Clinical Infection by Deena R. Altman, Mitchell J. Sullivan, Kieran Chacko, Divya Balasubramanian, Theodore R. Pak, William E. Sause, Krishan Kumar, Robert Sebra, Gintaras Deikus, Oliver Attie, Hannah R. Rose, M. E. Suzanne Lewis, Yi Fulmer, Ali Bashir, Andrew Kasarskis, Eric E. Schadt, Anthony R. Richardson, Victor J. Torres, Bo Shopsin, Harm van Bakel

    Published 2018
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  16. 16
    Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

    Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing by Gang Fang, Diana Munera, David I. Friedman, Anjali Mandlik, Michael C. Chao, Onureena Banerjee, Zhixing Feng, Bojan Losic, Milind Mahajan, Omar Jabado, Gintaras Deikus, Tyson A. Clark, Khai Luong, Iain A. Murray, Brigid M. Davis, Alona Keren‐Paz, Andrew Chess, Richard J. Roberts, Jonas Korlach, Steve Turner, Vipin Kumar, Matthew K. Waldor, Eric E. Schadt

    Published 2012
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  17. 17
    Neuronal impact of patient-specific aberrant NRXN1α splicing

    Neuronal impact of patient-specific aberrant NRXN1α splicing by Erin Flaherty, Shijia Zhu, Natalie Barretto, Esther Cheng, P.J. Michael Deans, Michael B. Fernando, Nadine Schrode, Nancy Francoeur, Alesia Antoine, Khaled Alganem, Madeline Halpern, Gintaras Deikus, Hardik Shah, Megan L. Fitzgerald, Ian Ladran, Peter Gochman, Judith L. Rapoport, Nadejda M. Tsankova, Robert E. McCullumsmith, Gabriel E. Hoffman, Robert Sebra, Gang Fang, Kristen Brennand

    Published 2019
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  18. 18
    Isoform-resolved transcriptome of the human preimplantation embryo

    Isoform-resolved transcriptome of the human preimplantation embryo by Denis Torre, Nancy Francoeur, Yael Kalma, Ilana Gross Carmel, Betsaida Salom Melo, Gintaras Deikus, Kimaada Allette, Ron Flohr, Maya Fridrikh, Konstantinos Vlachos, Kent Madrid, Hardik Shah, Ying‐Chih Wang, Shwetha Hara Sridhar, Melissa Smith, Efrat Eliyahu, Foad Azem, Hadar Amir, Yoav Mayshar, Ivan Marazzi, Ernesto Guccione, Eric E. Schadt, Dalit Ben‐Yosef, Robert Sebra

    Published 2023
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  19. 19
    Assembly and diploid architecture of an individual human genome via single-molecule technologies

    Assembly and diploid architecture of an individual human genome via single-molecule technologies by Matthew Pendleton, Robert Sebra, Andy Wing Chun Pang, Ajay Ummat, Oscar Franzén, Tobias Rausch, Adrian M. Stütz, William Stedman, Thomas Anantharaman, Alex Hastie, Dai Heng, Markus Hsi-Yang Fritz, Han Cao, Ariella Cohain, Gintaras Deikus, R. Durrett, Scott C. Blanchard, Russ B. Altman, Chen-Shan Chin, Yan Guo, Ellen E. Paxinos, Jan O. Korbel, Robert B. Darnell, W. Richard McCombie, Pui‐Yan Kwok, Christopher E. Mason, Eric E. Schadt, Ali Bashir

    Published 2015
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  20. 20
    Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis

    Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis by Pedro H. Oliveira, John W. Ribis, Elizabeth M. Garrett, Dominika Trzilova, Alex Kim, Ognjen Sekulović, Edward A. Mead, Theodore R. Pak, Shijia Zhu, Gintaras Deikus, Marie Touchon, Martha Lewis-Sandari, Colleen Beckford, Nathalie E. Zeitouni, Deena R. Altman, Elizabeth Webster, Irina Oussenko, Supinda Bunyavanich, Aneel K. Aggarwal, Ali Bashir, Gopi Patel, Frances Wallach, Camille Hamula, Shirish Huprikar, Eric E. Schadt, Robert Sebra, Harm van Bakel, Andrew Kasarskis, Rita Tamayo, Aimee Shen, Gang Fang

    Published 2019
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