Resultats de la cerca - Geert Geeven

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  1. 1
    peakC: a flexible, non-parametric peak calling package for 4C and Capture-C data

    peakC: a flexible, non-parametric peak calling package for 4C and Capture-C data per Geert Geeven, Hans Teunissen, Wouter de Laat, Elzo de Wit

    Publicat 2018
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  2. 2
    Re‐analysis of whole genome sequencing ends a diagnostic odyssey: Case report of an <i>RNU4‐2</i> related neurodevelopmental disorder

    Re‐analysis of whole genome sequencing ends a diagnostic odyssey: Case report of an <i>RNU4‐2</i> related neurodevelopmental disorder per Rachel Schot, Federico Ferraro, Geert Geeven, Karin E. M. Diderich, Tahsin Stefan Barakat

    Publicat 2024
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  3. 3
    4C-seq from beginning to end: A detailed protocol for sample preparation and data analysis

    4C-seq from beginning to end: A detailed protocol for sample preparation and data analysis per Peter H.L. Krijger, Geert Geeven, Valerio Bianchi, Catharina R.E. Hilvering, Wouter de Laat

    Publicat 2019
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  4. 4
    Characterization and dynamics of pericentromere-associated domains in mice

    Characterization and dynamics of pericentromere-associated domains in mice per Patrick J. Wijchers, Geert Geeven, Michael Eyres, Atze J. Bergsma, Mark Janssen, Marjon J.A.M. Verstegen, Yun Zhu, Yori Schell, Carlo Vermeulen, Elzo de Wit, Wouter de Laat

    Publicat 2015
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  5. 5
    Enhancers reside in a unique epigenetic environment during early zebrafish development

    Enhancers reside in a unique epigenetic environment during early zebrafish development per Lucas Kaaij, Michal Mokrý, Meng Zhou, Michael U. Musheev, Geert Geeven, Adrien S. J. Melquiond, António Miguel de Jesus Domingues, Wouter de Laat, Christof Niehrs, Andrew D. Smith, René F. Ketting

    Publicat 2016
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  6. 6
    Hominin-specific regulatory elements selectively emerged in oligodendrocytes and are disrupted in autism patients

    Hominin-specific regulatory elements selectively emerged in oligodendrocytes and are disrupted in autism patients per Bas Castelijns, Mirna Baak, Ilia Sarah Timpanaro, Caroline R.M. Wiggers, Marit W. Vermunt, Peng Shang, Ivanela Kondova, Geert Geeven, Valerio Bianchi, Wouter de Laat, Niels Geijsen, Menno P. Creyghton

    Publicat 2020
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  7. 7
    YAP Drives Growth by Controlling Transcriptional Pause Release from Dynamic Enhancers

    YAP Drives Growth by Controlling Transcriptional Pause Release from Dynamic Enhancers per Giorgio Giacomo Galli, Matteo Carrara, Wei-Chien Yuan, Christian Valdes‐Quezada, Basanta Gurung, Brian J. Pepe-Mooney, Tinghu Zhang, Geert Geeven, Nathanael S. Gray, Wouter de Laat, Raffaele Calogero, Fernando D. Camargo

    Publicat 2015
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  8. 8
    The role of confined placental mosaicism in fetal growth restriction: A retrospective cohort study

    The role of confined placental mosaicism in fetal growth restriction: A retrospective cohort study per Geerke M. Eggenhuizen, Attie T. J. I. Go, Zoë Sauter, Mariëtte J.V. Hoffer, Monique C. Haak, Geert Geeven, Karin E. M. Diderich, Marieke Joosten, Myrthe van den Born, Malgorzata I. Srebniak, Diane Van Opstal

    Publicat 2024
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  9. 9
    Large-Scale Identification of Coregulated Enhancer Networks in the Adult Human Brain

    Large-Scale Identification of Coregulated Enhancer Networks in the Adult Human Brain per Marit W. Vermunt, Peter Reinink, Jeroen Korving, Ewart de Bruijn, Paul M. Creyghton, Onur Basak, Geert Geeven, Pim W. Toonen, Nico Lansu, Charles Meunier, Sebastiaan van Heesch, Hans Clevers, Wouter de Laat, Edwin Cuppen, Menno P. Creyghton

    Publicat 2014
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  10. 10
    Early detection of active Human CytomegaloVirus (hCMV) infection in pregnant women using data generated for noninvasive fetal aneuploidy testing

    Early detection of active Human CytomegaloVirus (hCMV) infection in pregnant women using data generated for noninvasive fetal aneuploidy testing per Brigitte H. W. Faas, Galuh Astuti, Willem J. G. Melchers, A. Reuss, Christian Gilissen, Merryn Macville, Stijn A.I. Ghesquiere, Leonieke M.H. Houben, Malgorzata I. Srebniak, Geert Geeven, Janette Rahamat‐Langendoen, Erik A. Sistermans, Jasper Linthorst

    Publicat 2024
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  11. 11
    Cause and Consequence of Tethering a SubTAD to Different Nuclear Compartments

    Cause and Consequence of Tethering a SubTAD to Different Nuclear Compartments per Patrick J. Wijchers, Peter H.L. Krijger, Geert Geeven, Yun Zhu, Annette Denker, Marjon J.A.M. Verstegen, Christian Valdes‐Quezada, Carlo Vermeulen, Mark Janssen, Hans Teunissen, Lisette C.M. Anink-Groenen, Pernette J. Verschure, Wouter de Laat

    Publicat 2016
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  12. 12
    Genome-wide profiling of p53-regulated enhancer RNAs uncovers a subset of enhancers controlled by a lncRNA

    Genome-wide profiling of p53-regulated enhancer RNAs uncovers a subset of enhancers controlled by a lncRNA per Nicolas Léveillé, Carlos A. Melo, Koos Rooijers, Ángel Díaz‐Lagares, Sónia A. Melo, Gözde Korkmaz, Rui Lopes, Farhad Akbari Moqadam, Ana Maia, Patrick J. Wijchers, Geert Geeven, Monique L. den Boer, Raghu Kalluri, Wouter de Laat, Manel Esteller, Reuven Agami

    Publicat 2015
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  13. 13
    Local compartment changes and regulatory landscape alterations in histone H1-depleted cells

    Local compartment changes and regulatory landscape alterations in histone H1-depleted cells per Geert Geeven, Yun Zhu, Byung Ju Kim, Boris Bartholdy, Seung-Min Yang, Todd S. Macfarlan, Wesley D. Gifford, Samuel L. Pfaff, Marjon J.A.M. Verstegen, Hugo Pinto, Marit W. Vermunt, Menno P. Creyghton, Patrick J. Wijchers, J Stamatoyannopoulos, Arthur I. Skoultchi, Wouter de Laat

    Publicat 2015
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  14. 14
    Enhancer hubs and loop collisions identified from single-allele topologies

    Enhancer hubs and loop collisions identified from single-allele topologies per Amin Allahyar, Carlo Vermeulen, Britta A. M. Bouwman, Peter H.L. Krijger, Marjon J.A.M. Verstegen, Geert Geeven, Melissa van Kranenburg, Mark Pieterse, Roy Straver, Judith H.I. Haarhuis, Kees Jalink, Hans Teunissen, Ivo Renkens, Wigard P. Kloosterman, Benjamin D. Rowland, Elzo de Wit, Jeroen de Ridder, Wouter de Laat

    Publicat 2018
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  15. 15
    Evaluation of Circulating Tumor DNA as a Liquid Biomarker in Uveal Melanoma

    Evaluation of Circulating Tumor DNA as a Liquid Biomarker in Uveal Melanoma per Daniël P. de Bruyn, Natasha M. van Poppelen, Tom Brands, Susanne C. van den Boom, Ellis L. Eikenboom, Anja Wagner, Monique M. van Veghel–Plandsoen, Geert Geeven, Berna Beverloo, Caroline M. van Rij, Robert M. Verdijk, Nicole C. Naus, Mette Bagger, Jens Folke Kiilgaard, Annelies de Klein, Erwin Brosens, Emine Kılıç

    Publicat 2024
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  16. 16
    Sensitive Monogenic Noninvasive Prenatal Diagnosis by Targeted Haplotyping

    Sensitive Monogenic Noninvasive Prenatal Diagnosis by Targeted Haplotyping per Carlo Vermeulen, Geert Geeven, Elzo de Wit, Marjon J.A.M. Verstegen, Rumo Jansen, Melissa van Kranenburg, Ewart de Bruijn, Sara L. Pulit, Evelien Kruisselbrink, Zahra Shahsavari, Davood Omrani, Fatemeh Zeinali, Hossein Najmabadi, Θεοδώρα Κάτσιλα, Christina Vrettou, George P. Patrinos, Joanne Traeger‐Synodinos, Erik Splinter, Jeffrey M. Beekman, Sima Kheradmand Kia, Gerard J. te Meerman, Hans Kristian Ploos van Amstel, Wouter de Laat

    Publicat 2017
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  17. 17
    Pyruvate metabolism controls chromatin remodeling during CD4+ T cell activation

    Pyruvate metabolism controls chromatin remodeling during CD4+ T cell activation per Enric Mocholí, Laura Russo, Keshav Gopal, Andrew G. Ramstead, Sophia M. Hochrein, Harmjan R. Vos, Geert Geeven, Adeolu Adegoke, Anna T. Hoekstra, Robert M. van Es, José M. Ramos Pittol, Sebastiaan J. Vastert, Jared Rutter, Timothy R. D. J. Radstake, Jorg van Loosdregt, Celia R. Berkers, Michal Mokrý, Colin C. Anderson, Ryan M. O’Connell, Martin Vaeth, John R. Ussher, Boudewijn Burgering, Paul J. Coffer

    Publicat 2023
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  18. 18
    Web-accessible application for identifying pathogenic transcripts with RNA-seq: Increased sensitivity in diagnosis of neurodevelopmental disorders

    Web-accessible application for identifying pathogenic transcripts with RNA-seq: Increased sensitivity in diagnosis of neurodevelopmental disorders per Jordy Dekker, Rachel Schot, Michiel Bongaerts, Walter G. de Valk, Monique M. van Veghel–Plandsoen, Kathryn Monfils, Hannie Douben, Peter Elfferich, Esmee Kasteleijn, Leontine van Unen, Geert Geeven, Jasper J. Saris, Yvette van Ierland, Frans W. Verheijen, Marianne L. T. van der Sterre, Farah Sadeghi Niaraki, Daphne J. Smits, Hidde H. Huidekoper, Monique Williams, Martina Wilke, Virginie J. M. Verhoeven, Marieke Joosten, Anneke J.A. Kievit, Ingrid M.B.H. van de Laar, Lies H. Hoefsloot, Marianne Hoogeveen‐Westerveld, Mark Nellist, Grazia M.S. Mancini, Tjakko J. van Ham

    Publicat 2023
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  19. 19
    AMFR dysfunction causes autosomal recessive spastic paraplegia in human that is amenable to statin treatment in a preclinical model

    AMFR dysfunction causes autosomal recessive spastic paraplegia in human that is amenable to statin treatment in a preclinical model per Ruizhi Deng, Eva Medico Salsench, Anita Nikoncuk, Reshmi Ramakrishnan, Kristina Lanko, Nikolas A. Kühn, Herma C. van der Linde, Sarah Lor-Zade, Fatimah Albuainain, Yuwei Shi, Soheil Yousefi, Ivan Čapo, Evita Medici‐ van den Herik, Marjon van Slegtenhorst, Rick van Minkelen, Geert Geeven, Monique Mulder, George J. G. Ruijter, Dieter Lütjohann, Edwin H. Jacobs, Henry Houlden, Alistair T. Pagnamenta, Kay Metcalfe, Adam Jackson, Siddharth Banka, Lenika De Simone, Abigail Schwaede, Nancy L. Kuntz, Timothy Blake Palculict, Safdar Abbas, Muhammad Umair, Mohammed A. AlMuhaizea, Dilek Çolak, Hanan AlQudairy, Maysoon Alsagob, Catarina Pereira, Roberta Trunzo, Vasiliki Karageorgou, Aida M. Bertoli‐Avella, Peter Bauer, Arjan Bouman, Lies H. Hoefsloot, Tjakko J. van Ham, Mahmoud Y. Issa, Maha S. Zaki, Joseph G. Gleeson, Rob Willemsen, Namik Kaya, Stefan T. Arold, Reza Maroofian, Leslie E. Sanderson, Tahsin Stefan Barakat

    Publicat 2023
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