檢索結果 - Ferhat Ay

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  1. 1
    Identification of copy number variations and translocations in cancer cells from Hi-C data

    Identification of copy number variations and translocations in cancer cells from Hi-C data 由 Abhijit Chakraborty, Ferhat Ay

    出版 2017
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  2. 2
    Analysis methods for studying the 3D architecture of the genome

    Analysis methods for studying the 3D architecture of the genome 由 Ferhat Ay, William Stafford Noble

    出版 2015
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    Revisão
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  3. 3
    SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings

    SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings 由 Ferhat Ay, Manolis Kellis, Tamer Kahveci

    出版 2011
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  4. 4
    Scalable Steady State Analysis of Boolean Biological Regulatory Networks

    Scalable Steady State Analysis of Boolean Biological Regulatory Networks 由 Ferhat Ay, Fei Xu, Tamer Kahveci

    出版 2009
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  5. 5
    Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2

    Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2 由 Arya Kaul, Sourya Bhattacharyya, Ferhat Ay

    出版 2020
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  6. 6
    dcHiC detects differential compartments across multiple Hi-C datasets

    dcHiC detects differential compartments across multiple Hi-C datasets 由 Abhijit Chakraborty, Jeffrey Wang, Ferhat Ay

    出版 2022
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  7. 7
    Selfish: discovery of differential chromatin interactions via a self-similarity measure

    Selfish: discovery of differential chromatin interactions via a self-similarity measure 由 Abbas Roayaei Ardakany, Ferhat Ay, Stefano Lonardi

    出版 2019
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  8. 8
    Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts

    Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts 由 Ferhat Ay, Timothy L. Bailey, William Stafford Noble

    出版 2014
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  9. 9
    Identification of significant chromatin contacts from HiChIP data by FitHiChIP

    Identification of significant chromatin contacts from HiChIP data by FitHiChIP 由 Sourya Bhattacharyya, Vivek Chandra, Pandurangan Vijayanand, Ferhat Ay

    出版 2019
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  10. 10
    A statistical approach for inferring the 3D structure of the genome

    A statistical approach for inferring the 3D structure of the genome 由 Nelle Varoquaux, Ferhat Ay, William Stafford Noble, Jean‐Philippe Vert

    出版 2014
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  11. 11
    Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation

    Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation 由 Abbas Roayaei Ardakany, Halil Tuvan Gezer, Stefano Lonardi, Ferhat Ay

    出版 2020
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  12. 12
    Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program

    Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program 由 Vishnu Dileep, Ferhat Ay, Jiao Sima, Daniel L. Vera, William Stafford Noble, David M. Gilbert

    出版 2015
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  13. 13
    nipalsMCIA: Flexible Multi-Block Dimensionality Reduction in R via Nonlinear Iterative Partial Least Squares

    nipalsMCIA: Flexible Multi-Block Dimensionality Reduction in R via Nonlinear Iterative Partial Least Squares 由 Max Mattessich, Joaquin Reyna, E Aron, Ferhat Ay, Misha E. Kilmer, Steven H. Kleinstein, Anna Konstorum

    出版 2025
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  14. 14
    Multiple dimensions of epigenetic gene regulation in the malaria parasite <i>Plasmodium falciparum</i>

    Multiple dimensions of epigenetic gene regulation in the malaria parasite <i>Plasmodium falciparum</i> 由 Ferhat Ay, Evelien M. Bunnik, Nelle Varoquaux, Jean‐Philippe Vert, William Stafford Noble, Karine G. Le Roch

    出版 2014
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  15. 15
    Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression

    Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression 由 Maxwell W. Libbrecht, Ferhat Ay, Michael M. Hoffman, David M. Gilbert, Jeffrey A. Bilmes, William Stafford Noble

    出版 2015
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  16. 16
    A predictive modeling approach for cell line-specific long-range regulatory interactions

    A predictive modeling approach for cell line-specific long-range regulatory interactions 由 Sushmita Roy, Alireza Fotuhi Siahpirani, Deborah Chasman, Sara Knaack, Ferhat Ay, Ron Stewart, Michael D. Wilson, Rupa Sridharan

    出版 2015
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  17. 17
    Predictive regulatory models in <i>Drosophila melanogaster</i> by integrative inference of transcriptional networks

    Predictive regulatory models in <i>Drosophila melanogaster</i> by integrative inference of transcriptional networks 由 Daniel Marbach, Sushmita Roy, Ferhat Ay, Patrick E. Meyer, Rogerio Candeias, Tamer Kahveci, Christopher A. Bristow, Manolis Kellis

    出版 2012
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  18. 18
    Form and function of topologically associating genomic domains in budding yeast

    Form and function of topologically associating genomic domains in budding yeast 由 Umut Eser, Devon Chandler‐Brown, Ferhat Ay, Aaron F. Straight, Zhijun Duan, William Stafford Noble, Jan M. Skotheim

    出版 2017
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  19. 19
    Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C

    Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C 由 Ferhat Ay, Thanh Vu, Μ. Zeitz, Nelle Varoquaux, Jan E. Carette, Jean‐Philippe Vert, Andrew R. Hoffman, William Stafford Noble

    出版 2015
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  20. 20
    Comprehensive identification and analysis of human accelerated regulatory DNA

    Comprehensive identification and analysis of human accelerated regulatory DNA 由 Rachel M. Gittelman, Enna Hun, Ferhat Ay, Jennifer Madeoy, L Pennacchio, William Stafford Noble, R. David Hawkins, Joshua M. Akey

    出版 2015
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