Search Results - Cyriac Kandoth

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  1. 1
    PathScan: a tool for discerning mutational significance in groups of putative cancer genes

    PathScan: a tool for discerning mutational significance in groups of putative cancer genes by Michael C. Wendl, John W. Wallis, Ling Lin, Cyriac Kandoth, Elaine R. Mardis, Richard K. Wilson, Jun Li

    Published 2011
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  2. 2
    Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas

    Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas by Larsson Omberg, Kyle Ellrott, Yuan Yuan, Cyriac Kandoth, Chris Wong, Michael Kellen, Stephen Friend, Joshua M. Stuart, Han Liang, Jake Lin

    Published 2013
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  3. 3
    Comprehensive identification of mutational cancer driver genes across 12 tumor types

    Comprehensive identification of mutational cancer driver genes across 12 tumor types by David Tamborero, Abel González-Pérez, Christian Perez-Llamas, Jordi Deu-Pons, Cyriac Kandoth, Jüri Reimand, Michael S. Lawrence, Gad Getz, Gary D. Bader, Jun Li, Núria López-Bigas

    Published 2013
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  4. 4
    Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity

    Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity by Matthew T. Chang, Saurabh Asthana, Sizhi Paul Gao, Byron Lee, Jocelyn Chapman, Cyriac Kandoth, Jianjiong Gao, Nicholas D. Socci, David B. Solit, Adam B. Olshen, Nikolaus Schultz, Barry S. Taylor

    Published 2015
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  5. 5
    MuSiC: Identifying mutational significance in cancer genomes

    MuSiC: Identifying mutational significance in cancer genomes by Nathan D. Dees, Qunyuan Zhang, Cyriac Kandoth, Michael C. Wendl, William Schierding, Daniel C. Koboldt, Thomas B. Mooney, Matthew B. Callaway, David J. Dooling, Elaine R. Mardis, Richard K. Wilson, Li Ding

    Published 2012
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  6. 6
    Identification of a pan-cancer oncogenic microRNA superfamily anchored by a central core seed motif

    Identification of a pan-cancer oncogenic microRNA superfamily anchored by a central core seed motif by Mark P. Hamilton, Kimal Rajapakshe, Sean M. Hartig, Boris Reva, Michael D. McLellan, Cyriac Kandoth, Jun Li, Travis Zack, Preethi H. Gunaratne, David A. Wheeler, Cristian Coarfa, Sean E. McGuire

    Published 2013
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  7. 7
    BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data

    BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data by Ken Chen, John W. Wallis, Cyriac Kandoth, Joelle Kalicki-Veizer, Karen Mungall, Andrew J. Mungall, Steven J.M. Jones, Marco A. Marra, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson, John N. Weinstein, Li Ding

    Published 2012
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  8. 8
    Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma

    Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma by David H. Gutmann, Michael D. McLellan, Ibrahim Hussain, John W. Wallis, Lucinda Fulton, Robert S. Fulton, Vincent Magrini, Ryan Demeter, Todd Wylie, Cyriac Kandoth, Jeffrey R. Leonard, Abhijit Guha, Christopher A. Miller, Jun Li, Elaine R. Mardis

    Published 2012
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  9. 9
    Genetic and epigenetic evolution as a contributor to WT1-mutant leukemogenesis

    Genetic and epigenetic evolution as a contributor to WT1-mutant leukemogenesis by Elodie Pronier, Robert L. Bowman, Jihae Ahn, Jacob L. Glass, Cyriac Kandoth, Tiffany R. Merlinsky, Justin T. Whitfield, Benjamin H. Durham, Antoine Gruet, Amritha Varshini Hanasoge Somasundara, Raajit K. Rampal, Ari Melnick, Richard P. Koche, Barry S. Taylor, Ross L. Levine

    Published 2018
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  10. 10
    Recurrent DNMT3A mutations in patients with myelodysplastic syndromes

    Recurrent DNMT3A mutations in patients with myelodysplastic syndromes by Matthew J. Walter, Li Ding, Dong Shen, Jieya Shao, Marcus Grillot, Michael D. McLellan, Robert S. Fulton, H Schmidt, Joelle Kalicki-Veizer, Michele O’Laughlin, Cyriac Kandoth, Jack Baty, Peter Westervelt, John F. DiPersio, Elaine R. Mardis, Richard K. Wilson, T J Ley, Timothy A. Graubert

    Published 2011
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  11. 11
    Mutational landscape and significance across 12 major cancer types

    Mutational landscape and significance across 12 major cancer types by Cyriac Kandoth, Michael D. McLellan, Fabio Vandin, Kai Ye, Beifang Niu, Charles Lu, Mingchao Xie, Qunyuan Zhang, Joshua F. McMichael, Matthew A. Wyczalkowski, Mark D.M. Leiserson, Christopher A. Miller, John S. Welch, Matthew J. Walter, Michael C. Wendl, Timothy J. Ley, Richard K. Wilson, Benjamin J. Raphael, Li Ding

    Published 2013
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  12. 12
    Clonal diversity of recurrently mutated genes in myelodysplastic syndromes

    Clonal diversity of recurrently mutated genes in myelodysplastic syndromes by Matthew J. Walter, Dong Shen, Jin Shao, Li Ding, Brian S. White, Cyriac Kandoth, Christopher A. Miller, Bing Niu, Michael D. McLellan, Nathan D. Dees, Robert S. Fulton, Kerryn Elliot, Simon Heath, Marcus Grillot, Peter Westervelt, Daniel C. Link, John F. DiPersio, Elaine R. Mardis, Timothy J. Ley, Richard K. Wilson, Timothy A. Graubert

    Published 2013
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  13. 13
    Tumor Evolution and Drug Response in Patient-Derived Organoid Models of Bladder Cancer

    Tumor Evolution and Drug Response in Patient-Derived Organoid Models of Bladder Cancer by Suk Hyung Lee, Wenhuo Hu, Justin T. Matulay, Mark V. Silva, Tomasz B. Owczarek, Kwanghee Kim, Chee Wai Chua, LaMont J. Barlow, Cyriac Kandoth, Alanna B. Williams, Sarah K. Bergren, Eugene J. Pietzak, Christopher B. Anderson, Mitchell C. Benson, Jonathan Coleman, Barry S. Taylor, Cory Abate‐Shen, James M. McKiernan, Hikmat Al‐Ahmadie, David B. Solit, Michael M. Shen

    Published 2018
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  14. 14
    Integrated analysis of germline and somatic variants in ovarian cancer

    Integrated analysis of germline and somatic variants in ovarian cancer by Krishna Kanchi, Kimberly Johnson, Charles Lu, Michael D. McLellan, Mark D.M. Leiserson, Michael C. Wendl, Qunyuan Zhang, Daniel C. Koboldt, Mingchao Xie, Cyriac Kandoth, Joshua F. McMichael, Matthew A. Wyczalkowski, David E. Larson, Heather K. Schmidt, Christopher A. Miller, Robert S. Fulton, Paul T. Spellman, Elaine R. Mardis, Todd E. Druley, Timothy A. Graubert, Paul J. Goodfellow, Benjamin J. Raphael, Richard K. Wilson, Li Ding

    Published 2014
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  15. 15
    Regional differences in gallbladder cancer pathogenesis: Insights from a multi‐institutional comparison of tumor mutations

    Regional differences in gallbladder cancer pathogenesis: Insights from a multi‐institutional comparison of tumor mutations by Raja R. Narayan, John M. Creasy, Debra A. Goldman, Mithat Gönen, Cyriac Kandoth, Ritika Kundra, David B. Solit, Gokce Askan, David S. Klimstra, Olca Baştürk, Peter J. Allen, Vinod P. Balachandran, Michael I. D’Angelica, Ronald P. DeMatteo, Jeffrey A. Drebin, T. Peter Kingham, Amber L. Simpson, Ghassan K. Abou‐Alfa, James J. Harding, Eileen M. O’Reilly, Jean M. Butte, Ryusei Matsuyama, Itaru Endo, William R. Jarnagin

    Published 2018
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  16. 16
    Coaltered <i>Ras/B-raf</i> and <i>TP53</i> Is Associated with Extremes of Survivorship and Distinct Patterns of Metastasis in Patients with Metastatic Colorectal Cancer

    Coaltered <i>Ras/B-raf</i> and <i>TP53</i> Is Associated with Extremes of Survivorship and Distinct Patterns of Metastasis in Patients with Metastatic Colorectal Cancer by Jashodeep Datta, J. Joshua Smith, Walid K. Chatila, John C. McAuliffe, Cyriac Kandoth, Efsevia Vakiani, Timothy L. Frankel, Karuna Ganesh, Isaac Wasserman, Marla Lipsyc-Sharf, José G. Guillem, Garrett M. Nash, Philip B. Paty, Martin R. Weiser, Leonard B. Saltz, Michael F. Berger, William R. Jarnagin, Vinod Balachandran, T. Peter Kingham, Nancy E. Kemeny, Andrea Cercek, Julio García‐Aguilar, Barry S. Taylor, Agnès Viale, Rona Yaeger, David B. Solit, Nikolaus Schultz, Michael I. D’Angelica

    Published 2019
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  17. 17
    Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin

    Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin by Katherine A. Hoadley, Christina Yau, Denise M. Wolf, Andrew D. Cherniack, David Tamborero, Sam Ng, Max D.M. Leiserson, Beifang Niu, Michael D. McLellan, Vladislav Uzunangelov, Jiashan Zhang, Cyriac Kandoth, Rehan Akbani, Hui Shen, Larsson Omberg, Andy Chu, Jake Lin, Laura J. vanʼt Veer, Núria López-Bigas, Peter W. Laird, Benjamin J. Raphael, Jun Li, A. Gordon Robertson, Kai Ye, Gordon B. Mills, John N. Weinstein, Carter Van Waes, Zhong Chen, Jun Li, Stephen C. Benz, Charles M. Perou, Joshua M. Stuart

    Published 2014
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  18. 18
    Accelerating Discovery of Functional Mutant Alleles in Cancer

    Accelerating Discovery of Functional Mutant Alleles in Cancer by Matthew T. Chang, Tripti Shrestha Bhattarai, Alison M. Schram, Craig M. Bielski, Mark T.A. Donoghue, Philip Jonsson, Debyani Chakravarty, Sarah Phillips, Cyriac Kandoth, Alexander Penson, Alexander N. Gorelick, Tambudzai Shamu, Swati Patel, Christopher Harris, Jianjiong Gao, S. Onur Sumer, Ritika Kundra, Pedram Razavi, Bob T. Li, Dalicia N. Reales, Nicholas D. Socci, Gowtham Jayakumaran, Ahmet Zehir, Ryma Benayed, Maria E. Arcila, Sarat Chandarlapaty, Marc Ladanyi, Nikolaus Schultz, José Baselga, Michael F. Berger, Neal Rosen, David B. Solit, David M. Hyman, Barry S. Taylor

    Published 2017
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  19. 19
    Whole-genome sequencing identifies genetic alterations in pediatric low-grade gliomas

    Whole-genome sequencing identifies genetic alterations in pediatric low-grade gliomas by Jinghui Zhang, Gang Wu, Claudia P. Miller, Ruth Tatevossian, James Dalton, Bo Tang, Wilda Orisme, Chandanamali Punchihewa, Matthew Parker, Ibrahim Qaddoumi, Fredrick A. Boop, Charles Lu, Cyriac Kandoth, Li Ding, Ryan P. Lee, Robert Huether, Xiang Chen, Erin Hedlund, Panduka Nagahawatte, Michael Rusch, Kristy Boggs, Jinjun Cheng, Jared Becksfort, Jing Ma, Guangchun Song, Yongjin Li, Lei Wei, Jianmin Wang, Sheila Shurtleff, John Easton, David Zhao, Robert S. Fulton, Lucinda Fulton, David J. Dooling, Bhavin Vadodaria, Heather L. Mulder, Chunlao Tang, Kerri Ochoa, Charles G. Mullighan, Amar Gajjar, Richard W. Kriwacki, Denise Sheer, Richard J. Gilbertson, Elaine R. Mardis, Richard K. Wilson, James R. Downing, Suzanne J. Baker, David W. Ellison

    Published 2013
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  20. 20
    The Genomic Landscape of Endocrine-Resistant Advanced Breast Cancers

    The Genomic Landscape of Endocrine-Resistant Advanced Breast Cancers by Pedram Razavi, Matthew T. Chang, Guotai Xu, Chaitanya Bandlamudi, Dara S. Ross, Neil Vasan, Yanyan Cai, Craig M. Bielski, Mark T.A. Donoghue, Philip Jonsson, Alexander Penson, Ronglai Shen, Fresia Pareja, Ritika Kundra, Sumit Middha, Michael L. Cheng, Ahmet Zehir, Cyriac Kandoth, Ruchi Patel, Kety Huberman, Lillian M. Smyth, Komal Jhaveri, Shanu Modi, Tiffany A. Traina, Chau T. Dang, Wen Zhang, Britta Weigelt, Bob T. Li, Marc Ladanyi, David M. Hyman, Nikolaus Schultz, Mark E. Robson, Clifford A. Hudis, Edi Brogi, Agnès Viale, Larry Norton, Maura N. Dickler, Michael F. Berger, Christine A. Iacobuzio‐Donahue, Sarat Chandarlapaty, Maurizio Scaltriti, Jorge S. Reis‐Filho, David B. Solit, Barry S. Taylor, José Baselga

    Published 2018
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