Výsledky vyhledávání - Chet Birger

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  1. 1
    The Molecular Signatures Database Hallmark Gene Set Collection

    The Molecular Signatures Database Hallmark Gene Set Collection Autor Arthur Liberzon, Chet Birger, Helga Thorvaldsdóttir, Mahmoud Ghandi, Jill P. Mesirov, Pablo Tamayo

    Vydáno 2015
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  2. 2
    FireCloud, a scalable cloud-based platform for collaborative genome analysis: Strategies for reducing and controlling costs

    FireCloud, a scalable cloud-based platform for collaborative genome analysis: Strategies for reducing and controlling costs Autor Chet Birger, Megan Hanna, Edward A. Salinas, Jason C. Neff, Gordon Saksena, Dimitri Livitz, Daniel Rosebrock, Chip Stewart, Ignaty Leshchiner, Alexander Baumann, Douglas Voet, Kristian Cibulskis, Eric Banks, Anthony Philippakis, Gad Getz

    Vydáno 2017
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  3. 3
    Genetic and transcriptional evolution alters cancer cell line drug response

    Genetic and transcriptional evolution alters cancer cell line drug response Autor Uri Ben‐David, Benjamin A. Siranosian, Gavin Ha, Helen Tang, Yaara Oren, Kunihiko Hinohara, Craig A. Strathdee, Joshua M. Dempster, Nicholas Lyons, Robert Burns, Anwesha Nag, Guillaume Kugener, Beth A. Cimini, Peter Tsvetkov, Yosef E. Maruvka, Ryan O’Rourke, Anthony J. Garrity, Andrew A. Tubelli, Pratiti Bandopadhayay, Aviad Tsherniak, Francisca Vázquez, Bang Wong, Chet Birger, Mahmoud Ghandi, Aaron R. Thorner, Joshua A. Bittker, Matthew Meyerson, Gad Getz, Rameen Beroukhim, Todd R. Golub

    Vydáno 2018
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  4. 4
    Characterizing genomic alterations in cancer by complementary functional associations

    Characterizing genomic alterations in cancer by complementary functional associations Autor Jong Wook Kim, Olga Botvinnik, Omar Abudayyeh, Chet Birger, Joseph Rosenbluh, Yashaswi Shrestha, Mohamed E. Abazeed, Peter S. Hammerman, Daniel DiCara, David J. Konieczkowski, Cory M. Johannessen, Arthur Liberzon, Amir Reza Alizad-Rahvar, Gabriela Alexe, Andrew J. Aguirre, Mahmoud Ghandi, Heidi Greulich, Francisca Vázquez, Barbara A. Weir, Eliezer M. Van Allen, Aviad Tsherniak, Diane D. Shao, Travis Zack, Michael S. Noble, Gad Getz, Rameen Beroukhim, Levi A. Garraway, Masoud Ardakani, Chiara Romualdi, Gabriele Sales, David A. Barbie, Jesse S. Boehm, William C. Hahn, Jill P. Mesirov, Pablo Tamayo

    Vydáno 2016
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  5. 5
    Proteogenomic and metabolomic characterization of human glioblastoma

    Proteogenomic and metabolomic characterization of human glioblastoma Autor Liang-Bo Wang, Alla Karpova, Marina Gritsenko, Jennifer Kyle, Song Cao, Yize Li, Dmitry Rykunov, Antonio Colaprico, Joseph H. Rothstein, Runyu Hong, Vasileios Stathias, MacIntosh Cornwell, Francesca Petralia, Yige Wu, Boris Reva, Karsten Krug, Pietro Pugliese, Emily Kawaler, Lindsey K. Olsen, Wen-Wei Liang, Xiaoyu Song, Yongchao Dou, Michael C. Wendl, Wagma Caravan, Wenke Liu, Daniel Cui Zhou, Jiayi Ji, Chia‐Feng Tsai, Vladislav Petyuk, Jamie Moon, Weiping Ma, Rosalie Chu, Karl Weitz, Ronald J. Moore, Matthew Monroe, Rui Zhao, Xiaolu Yang, Seungyeul Yoo, Azra Krek, Alexis Demopoulos, Houxiang Zhu, Matthew A. Wyczalkowski, Joshua F. McMichael, Brittany Henderson, Caleb M. Lindgren, Hannah Boekweg, Shuangjia Lu, Jessika Baral, Lijun Yao, Kelly G. Stratton, Lisa Bramer, Erika Zink, Sneha Couvillion, Kent Bloodsworth, Shankha Satpathy, Weiva Sieh, Simina M. Boca, Stephan C. Schürer, Feng Chen, Maciej Wiznerowicz, Karen A. Ketchum, Emily S. Boja, Christopher R. Kinsinger, Ana I. Robles, Tara Hiltke, Mathangi Thiagarajan, Alexey I. Nesvizhskii, Bing Zhang, D.R. Mani, Michele Ceccarelli, Xi S. Chen, Sandra Cottingham, Qing Kay Li, Albert H. Kim, David Fenyö, Kelly V. Ruggles, Henry Rodriguez, Mehdi Mesri, Samuel Payne, Adam Resnick, Pei Wang, Richard Smith, Antonio Iavarone, Milan G. Chheda, Jill S. Barnholtz‐Sloan, Karin Rodland, Tao Liu, Li Ding, Anupriya Agarwal, Mitual Amin, Eunkyung An, Matthew L. Anderson, David W. Andrews, Thomas Bauer, Chet Birger, Michael J. Birrer, Lili M. Blumenberg, William Bocik, Uma Borate, Melissa Borucki

    Vydáno 2021
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  6. 6
    Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

    Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma Autor David Clark, Saravana M. Dhanasekaran, Francesca Petralia, Jianbo Pan, Xiaoyu Song, Yingwei Hu, Felipe da Veiga Leprevost, Boris Reva, T. Mamie Lih, Hui-Yin Chang, Weiping Ma, Chen Huang, Christopher J. Ricketts, Lijun Chen, Azra Krek, Yize Li, Dmitry Rykunov, Qing Kay Li, Lin S. Chen, Umut Özbek, Suhas Vasaikar, Yige Wu, Seungyeul Yoo, Shrabanti Chowdhury, Matthew A. Wyczalkowski, Jiayi Ji, Michael Schnaubelt, Andy T. Kong, Sunantha Sethuraman, Dmitry M. Avtonomov, Minghui Ao, Antonio Colaprico, Song Cao, Kyung-Cho Cho, Selim Kalaycı, Shiyong Ma, Wenke Liu, Kelly V. Ruggles, Anna Calinawan, Zeynep H. Gümüş, Daniel Geiszler, Emily Kawaler, Guo Ci Teo, Bo Wen, Yuping Zhang, Sarah Keegan, Kai Li, Feng Chen, Nathan Edwards, Phillip M. Pierorazio, Xi Chen, Christian P. Pavlovich, A. Ari Hakimi, Gabriel Bromiński, James J. Hsieh, Andrzej Antczak, Tatiana Omelchenko, Jan Lubiński, Maciej Wiznerowicz, W. Marston Linehan, Christopher R. Kinsinger, Mathangi Thiagarajan, Emily S. Boja, Mehdi Mesri, Tara Hiltke, Ana I. Robles, Henry Rodriguez, Jiang Qian, David Fenyö, Bing Zhang, Li Ding, Eric E. Schadt, Arul M. Chinnaiyan, Zhen Zhang, Gilbert S. Omenn, Marcin Cieślik, Daniel W. Chan, Alexey I. Nesvizhskii, Pei Wang, Hui Zhang, A. Samad Hashimi, Alexander R. Pico, Alla Karpova, Alyssa Charamut, Amanda G. Paulovich, Amy M. Perou, Anna Malovannaya, Annette Marrero-Oliveras, Anupriya Agarwal, Barbara Hindenach, Barbara L. Pruetz, Beom‐Jun Kim, Brian J. Druker, Chelsea J. Newton, Chet Birger, Corbin D. Jones, Cristina E. Tognon, D.R. Mani, Dana R. Valley, Daniel C. Rohrer

    Vydáno 2019
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  7. 7
    Proteogenomic Characterization of Endometrial Carcinoma

    Proteogenomic Characterization of Endometrial Carcinoma Autor Yongchao Dou, Emily Kawaler, Daniel Cui Zhou, Marina Gritsenko, Chen Huang, Lili M. Blumenberg, Alla Karpova, Vladislav Petyuk, Sara R. Savage, Shankha Satpathy, Wenke Liu, Yige Wu, Chia‐Feng Tsai, Bo Wen, Zhi Li, Song Cao, Jamie Moon, Zhiao Shi, MacIntosh Cornwell, Matthew A. Wyczalkowski, Rosalie Chu, Suhas Vasaikar, Hua Zhou, Qingsong Gao, Ronald J. Moore, Kai Li, Sunantha Sethuraman, Matthew Monroe, Rui Zhao, David I. Heiman, Karsten Krug, Karl R. Clauser, Ramani Kothadia, Yosef E. Maruvka, Alexander R. Pico, Amanda E. Oliphant, Emily L. Hoskins, Samuel L. Pugh, Sean J.I. Beecroft, David W. Adams, Jonathan C. Jarman, Andy T. Kong, Hui-Yin Chang, Boris Reva, Yuxing Liao, Dmitry Rykunov, Antonio Colaprico, Xi Chen, Andrzej Czekański, Marcin Jędryka, Rafał Matkowski, Maciej Wiznerowicz, Tara Hiltke, Emily S. Boja, Christopher R. Kinsinger, Mehdi Mesri, Ana I. Robles, Henry Rodriguez, David G. Mutch, Katherine C. Fuh, Matthew J. Ellis, Deborah F. DeLair, Mathangi Thiagarajan, D.R. Mani, Gad Getz, Michael S. Noble, Alexey I. Nesvizhskii, Pei Wang, Matthew L. Anderson, Douglas A. Levine, Richard Smith, Samuel Payne, Kelly V. Ruggles, Karin Rodland, Li Ding, Bing Zhang, Tao Liu, David Fenyö, Anupriya Agarwal, Meenakshi Anurag, Dmitry M. Avtonomov, Chet Birger, Michael J. Birrer, Simina M. Boca, William Bocik, Uma Borate, Melissa Borucki, Meghan C. Burke, Shuang Cai, Anna Calinawan, Steven A. Carr, Sonya Carter, Mauro A. A. Castro, Sandra Cerda, Michelle Chaikin, Daniel W. Chan, Doug W. Chan, Alyssa Charamut, Feng Chen, Jin Chen

    Vydáno 2020
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  8. 8
    Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma

    Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma Autor Michael A. Gillette, Shankha Satpathy, Song Cao, Saravana M. Dhanasekaran, Suhas Vasaikar, Karsten Krug, Francesca Petralia, Yize Li, Wen-Wei Liang, Boris Reva, Azra Krek, Jiayi Ji, Xiaoyu Song, Wenke Liu, Runyu Hong, Lijun Yao, Lili M. Blumenberg, Sara R. Savage, Michael C. Wendl, Bo Wen, Kai Li, Lauren C. Tang, Melanie A. MacMullan, Shayan C. Avanessian, M. Harry Kane, Chelsea J. Newton, MacIntosh Cornwell, Ramani Kothadia, Weiping Ma, Seungyeul Yoo, Rahul Mannan, Pankaj Vats, Chandan Kumar‐Sinha, Emily Kawaler, Tatiana Omelchenko, Antonio Colaprico, Yifat Geffen, Yosef E. Maruvka, Felipe da Veiga Leprevost, Maciej Wiznerowicz, Zeynep H. Gümüş, Rajwanth Veluswamy, Galen Hostetter, David I. Heiman, Matthew A. Wyczalkowski, Tara Hiltke, Mehdi Mesri, Christopher R. Kinsinger, Emily S. Boja, Gilbert S. Omenn, Arul M. Chinnaiyan, Henry Rodriguez, Qing Kay Li, Scott D. Jewell, Mathangi Thiagarajan, Gad Getz, Bing Zhang, David Fenyö, Kelly V. Ruggles, Marcin Cieślik, Ana I. Robles, Karl R. Clauser, Ramaswamy Govindan, Pei Wang, Alexey I. Nesvizhskii, Li Ding, D.R. Mani, Steven A. Carr, Alex Webster, Alicia Francis, Alyssa Charamut, Amanda G. Paulovich, Amy M. Perou, Andrew K. Godwin, Andrii Karnuta, Annette Marrero-Oliveras, Barbara Hindenach, Barbara L. Pruetz, Bartosz Kubisa, Brian J. Druker, Chet Birger, Corbin D. Jones, Dana R. Valley, Daniel C. Rohrer, Daniel Cui Zhou, Daniel W. Chan, David Chesla, David Clark, Dmitry Rykunov, Donghui Tan, Elena V. Ponomareva, Elizabeth R. Duffy, Eric Burks, Eric E. Schadt, Erik J. Bergstrom, Eugene S. Fedorov, Ewa P. Malc, George D. Wilson, Haiquan Chen, Halina Krzystek

    Vydáno 2020
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  9. 9
    Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma

    Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma Autor Chen Huang, Lijun Chen, Sara R. Savage, Rodrigo Vargas Eguez, Yongchao Dou, Yize Li, Felipe da Veiga Leprevost, Eric J. Jaehnig, Jonathan T. Lei, Bo Wen, Michael Schnaubelt, Karsten Krug, Xiaoyu Song, Marcin Cieślik, Hui-Yin Chang, Matthew A. Wyczalkowski, Kai Li, Antonio Colaprico, Qing Kay Li, David Clark, Yingwei Hu, Liwei Cao, Jianbo Pan, Yuefan Wang, Kyung-Cho Cho, Zhiao Shi, Yuxing Liao, Wen Jiang, Meenakshi Anurag, Jiayi Ji, Seungyeul Yoo, Daniel Cui Zhou, Wen-Wei Liang, Michael C. Wendl, Pankaj Vats, Steven A. Carr, D.R. Mani, Zhen Zhang, Jiang Qian, Xi S. Chen, Alexander R. Pico, Pei Wang, Arul M. Chinnaiyan, Karen A. Ketchum, Christopher R. Kinsinger, Ana I. Robles, Eunkyung An, Tara Hiltke, Mehdi Mesri, Mathangi Thiagarajan, Alissa M. Weaver, Andrew G. Sikora, Jan Lubiński, Małgorzata Wierzbicka, Maciej Wiznerowicz, Shankha Satpathy, Michael A. Gillette, George Miles, Matthew J. Ellis, Gilbert S. Omenn, Henry Rodriguez, Emily S. Boja, Saravana M. Dhanasekaran, Li Ding, Alexey I. Nesvizhskii, Adel K. El‐Naggar, Daniel W. Chan, Hui Zhang, Bing Zhang, Anupriya Agarwal, Matthew L. Anderson, Shayan C. Avanessian, Dmitry M. Avtonomov, Oliver F. Bathe, Chet Birger, Michael J. Birrer, Lili M. Blumenberg, William Bocik, Uma Borate, Melissa Borucki, Meghan C. Burke, Shuang Cai, Anna Calinawan, Sandra Cerda, Alyssa Charamut, Lin Chen, Shrabanti Chowdhury, Karl R. Clauser, Houston Culpepper, Tomasz Czernicki, Fulvio D’Angelo, Jacob Day, Stephanie Young, Emek Demir, Fei Ding, Marcin J. Domagalski, Joseph C. Dort, Brian J. Druker, Elizabeth R. Duffy, Maureen A. Dyer

    Vydáno 2021
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  10. 10
    Proteogenomic characterization of pancreatic ductal adenocarcinoma

    Proteogenomic characterization of pancreatic ductal adenocarcinoma Autor Liwei Cao, Chen Huang, Daniel Cui Zhou, Yingwei Hu, T. Mamie Lih, Sara R. Savage, Karsten Krug, David Clark, Michael Schnaubelt, Lijun Chen, Felipe da Veiga Leprevost, Rodrigo Vargas Eguez, Weiming Yang, Jianbo Pan, Bo Wen, Yongchao Dou, Wen Jiang, Yuxing Liao, Zhiao Shi, Nadezhda V. Terekhanova, Song Cao, Rita Jui-Hsien Lu, Yize Li, Ruiyang Liu, Houxiang Zhu, Peter Ronning, Yige Wu, Matthew A. Wyczalkowski, Hariharan Easwaran, Ludmila Danilova, Arvind Singh Mer, Seungyeul Yoo, Joshua M. Wang, Wenke Liu, Benjamin Haibe‐Kains, Mathangi Thiagarajan, Scott D. Jewell, Galen Hostetter, Chelsea J. Newton, Qing Kay Li, Michael H. A. Roehrl, David Fenyö, Pei Wang, Alexey I. Nesvizhskii, D.R. Mani, Gilbert S. Omenn, Emily S. Boja, Mehdi Mesri, Ana I. Robles, Henry Rodriguez, Oliver F. Bathe, Daniel W. Chan, Ralph H. Hruban, Li Ding, Bing Zhang, Hui Zhang, Mitual Amin, Eunkyung An, Christina Ayad, Thomas Bauer, Chet Birger, Michael J. Birrer, Simina M. Boca, William Bocik, Melissa Borucki, Shuang Cai, Steven A. Carr, Sandra Cerda, Huan Chen, Steven Chen, David Chesla, Arul M. Chinnaiyan, Antonio Colaprico, Sandra Cottingham, Magdalena Derejska, Saravana M. Dhanasekaran, Marcin J. Domagalski, Brian J. Druker, Elizabeth R. Duffy, Maureen A. Dyer, Nathan Edwards, Matthew J. Ellis, Jennifer Eschbacher, Alicia Francis, Jesse Francis, Stacey Gabriel, N Gabrovski, Johanna Gardner, Gad Getz, Michael A. Gillette, Charles A. Goldthwaite, Pamela Grady, Shuai Guo, Pushpa Hariharan, Tara Hiltke, Barbara Hindenach, Katherine A. Hoadley, Jasmine Huang, Corbin D. Jones, Karen A. Ketchum

    Vydáno 2021
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  11. 11
    Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

    Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma Autor David Clark, Saravana M. Dhanasekaran, Francesca Petralia, Jianbo Pan, Xiaoyu Song, Yingwei Hu, Felipe da Veiga Leprevost, Boris Reva, T. Mamie Lih, Hui-Yin Chang, Weiping Ma, Chen Huang, Christopher J. Ricketts, Lijun Chen, Azra Krek, Yize Li, Dmitry Rykunov, Qing Kay Li, Lin S. Chen, Umut Özbek, Suhas Vasaikar, Yige Wu, Seungyeul Yoo, Shrabanti Chowdhury, Matthew A. Wyczalkowski, Jiayi Ji, Michael Schnaubelt, Andy T. Kong, Sunantha Sethuraman, Dmitry M. Avtonomov, Minghui Ao, Antonio Colaprico, Song Cao, Kyung-Cho Cho, Selim Kalaycı, Shiyong Ma, Wenke Liu, Kelly V. Ruggles, Anna Calinawan, Zeynep H. Gümüş, Daniel Geiszler, Emily Kawaler, Guo Ci Teo, Bo Wen, Yuping Zhang, Sarah Keegan, Kai Li, Feng Chen, Nathan Edwards, Phillip M. Pierorazio, Xi Chen, Christian P. Pavlovich, A. Ari Hakimi, Gabriel Bromiński, James J. Hsieh, Andrzej Antczak, Tatiana Omelchenko, Jan Lubiński, Maciej Wiznerowicz, W. Marston Linehan, Christopher R. Kinsinger, Mathangi Thiagarajan, Emily S. Boja, Mehdi Mesri, Tara Hiltke, Ana I. Robles, Henry Rodriguez, Qian Jiang, David Fenyö, Bing Zhang, Li Ding, Eric E. Schadt, Arul M. Chinnaiyan, Zhen Zhang, Gilbert S. Omenn, Marcin Cieślik, Daniel W. Chan, Alexey I. Nesvizhskii, Pei Wang, Hui Zhang, A. Samad Hashimi, Alexander R. Pico, Alla Y. Karpova, Alyssa Charamut, Amanda G. Paulovich, Amy M. Perou, Anna Malovannaya, Annette Marrero-Oliveras, Anupriya Agarwal, Barbara Hindenach, Barbara L. Pruetz, Beom‐Jun Kim, Brian J. Druker, Chelsea J. Newton, Chet Birger, Corbin D. Jones, Cristina E. Tognon, D.R. Mani, Dana R. Valley, Daniel C. Rohrer

    Vydáno 2020
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  12. 12
    Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness

    Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness Autor Yize Li, T. Mamie Lih, Saravana M. Dhanasekaran, Rahul Mannan, Lijun Chen, Marcin Cieślik, Yige Wu, Rita Jiu-Hsien Lu, David Clark, Iga Kołodziejczak, Runyu Hong, Siqi Chen, Yanyan Zhao, Seema Chugh, Wagma Caravan, Nataly Naser Al Deen, Noshad Hosseini, Chelsea J. Newton, Karsten Krug, Yuanwei Xu, Kyung-Cho Cho, Yingwei Hu, Yuping Zhang, Chandan Kumar‐Sinha, Weiping Ma, Anna Calinawan, Matthew A. Wyczalkowski, Michael C. Wendl, Yuefan Wang, Shenghao Guo, Cissy Zhang, Anne Le, Aniket Dagar, Alex Hopkins, Hanbyul Cho, Felipe da Veiga Leprevost, Xiaojun Jing, Guo Ci Teo, Wenke Liu, Melissa A. Reimers, Russell K. Pachynski, Alexander J. Lazar, Arul M. Chinnaiyan, Brian Andrew Van Tine, Bing Zhang, Karin Rodland, Gad Getz, D.R. Mani, Pei Wang, Feng Chen, Galen Hostetter, Mathangi Thiagarajan, W. Marston Linehan, David Fenyö, Scott D. Jewell, Gilbert S. Omenn, Rohit Mehra, Maciej Wiznerowicz, Ana I. Robles, Mehdi Mesri, Tara Hiltke, Eunkyung An, Henry Rodriguez, Daniel W. Chan, Christopher J. Ricketts, Alexey I. Nesvizhskii, Hui Zhang, Li Ding, Alicia Francis, Amanda G. Paulovich, Andrzej Antczak, Anthony R. Green, Antonio Colaprico, A. Ari Hakimi, Barb Pruetz, Barbara Hindenach, Birendra Kumar Yadav, Boris Reva, Brenda Fevrier-Sullivan, Brian J. Druker, Cezary Szczylik, Charles A. Goldthwaite, Chet Birger, Corbin D. Jones, Daniel C. Rohrer, Darlene Tansil, David Chesla, David I. Heiman, Elizabeth R. Duffy, Eri E. Schadt, Francesca Petralia, Gabriel Bromiński, Gabriela Quiroga‐Garza, George D. Wilson, Ginny Xiaohe Li, Grace Zhao, Yi Hsiao, James J. Hsieh, Jan Lubiński, Jasmin Bavarva

    Vydáno 2022
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  13. 13
    Proteogenomic insights suggest druggable pathways in endometrial carcinoma

    Proteogenomic insights suggest druggable pathways in endometrial carcinoma Autor Yongchao Dou, Lizabeth Katsnelson, Marina Gritsenko, Yingwei Hu, Boris Reva, Runyu Hong, Yi-Ting Wang, Iga Kołodziejczak, Rita Jui-Hsien Lu, Chia‐Feng Tsai, Wen Bu, Wenke Liu, Xiaofang Guo, Eunkyung An, Rebecca C. Arend, Jasmin Bavarva, Lijun Chen, Rosalie Chu, Andrzej Czekański, Teresa Davoli, Elizabeth G. Demicco, Deborah F. DeLair, Kelly A. Devereaux, Saravana M. Dhanasekaran, Peter R. Dottino, Bailee Dover, Thomas Fillmore, McKenzie E. Foxall, Catherine Hermann, Tara Hiltke, Galen Hostetter, Marcin Jędryka, Scott D. Jewell, Isabelle Johnson, Andrea G. Kahn, Amy T. Ku, Chandan Kumar‐Sinha, Paweł Kurzawa, Alexander J. Lazar, Rossana Lazcano, Jonathan T. Lei, Yi Li, Yuxing Liao, T. Mamie Lih, Tai‐Tu Lin, John A. Martignetti, Ramya P. Masand, Rafał Matkowski, Wilson McKerrow, Mehdi Mesri, Matthew Monroe, Jamie Moon, Ronald J. Moore, Michael Nestor, Chelsea J. Newton, Tatiana Omelchenko, Gilbert S. Omenn, Samuel Payne, Vladislav Petyuk, Ana I. Robles, Henry Rodriguez, Kelly V. Ruggles, Dmitry Rykunov, Sara R. Savage, Athena Schepmoes, Tujin Shi, Zhiao Shi, Jimin Tan, Mason D. Taylor, Mathangi Thiagarajan, Joshua M. Wang, Karl Weitz, Bo Wen, Claire Williams, Yige Wu, Matthew A. Wyczalkowski, Xinpei Yi, Xu Zhang, Rui Zhao, David G. Mutch, Arul M. Chinnaiyan, Richard Smith, Alexey I. Nesvizhskii, Pei Wang, Maciej Wiznerowicz, Li Ding, D.R. Mani, Hui Zhang, Matthew L. Anderson, Karin Rodland, Bing Zhang, Tao Liu, David Fenyö, Andrzej Antczak, Meenakshi Anurag, Thomas Bauer, Chet Birger, Michael J. Birrer, Melissa Borucki, Shuang Cai

    Vydáno 2023
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  14. 14
    Pan-cancer proteogenomics connects oncogenic drivers to functional states

    Pan-cancer proteogenomics connects oncogenic drivers to functional states Autor Yize Li, Eduard Porta‐Pardo, Collin Tokheim, Matthew H. Bailey, Tomer M. Yaron, Vasileios Stathias, Yifat Geffen, Kathleen J. Imbach, Song Cao, Shankara Anand, Yo Akiyama, Wenke Liu, Matthew A. Wyczalkowski, Yizhe Song, Erik Storrs, Michael C. Wendl, Wubing Zhang, Mustafa Sibai, Victoria Ruiz‐Serra, Wen-Wei Liang, Nadezhda V. Terekhanova, Fernanda Martins Rodrigues, Karl R. Clauser, David I. Heiman, Qing Zhang, François Aguet, Anna Calinawan, Saravana M. Dhanasekaran, Chet Birger, Shankha Satpathy, Daniel Cui Zhou, Liang-Bo Wang, Jessika Baral, Jared L. Johnson, Emily M. Huntsman, Pietro Pugliese, Antonio Colaprico, Antonio Iavarone, Milan G. Chheda, Christopher J. Ricketts, David Fenyö, Samuel Payne, Henry Rodriguez, Ana I. Robles, Michael A. Gillette, Chandan Kumar‐Sinha, Alexander J. Lazar, Lewis C. Cantley, Gad Getz, Li Ding, Eunkyung An, Meenakshi Anurag, Jasmin Bavarva, Michael J. Birrer, Anna Calinawan, Michele Ceccarelli, Daniel W. Chan, Arul M. Chinnaiyan, Hanbyul Cho, Shrabanti Chowdhury, Marcin Cieślik, Felipe da Veiga Leprevost, Corbin Day, Marcin J. Domagalski, Yongchao Dou, Brian J. Druker, Nathan Edwards, Matthew J. Ellis, Myvizhi Esai Selvan, Steven M. Foltz, Alicia Francis, Tania J González-Robles, Sara J.C. Gosline, Zeynep H. Gümüş, Tara Hiltke, Runyu Hong, Galen Hostetter, Yingwei Hu, Chen Huang, Emily M. Huntsman, Eric J. Jaehnig, Scott Jewel, Jiayi Ji, Wen Jiang, Lizabeth Katsnelson, Karen A. Ketchum, Iga Kołodziejczak, Jonathan T. Lei, Yuxing Liao, Caleb M. Lindgren, Tao Liu, Weiping Ma, Wilson McKerrow, Alexey I. Nesvizhskii, Chelsea J. Newton, Robert Oldroyd, Gilbert S. Omenn, Amanda G. Paulovich, Francesca Petralia, Boris Reva

    Vydáno 2023
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  15. 15
    Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation

    Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation Autor Yifat Geffen, Shankara Anand, Yo Akiyama, Tomer M. Yaron, Yizhe Song, Jared L. Johnson, Akshay Govindan, Özgün Babur, Yize Li, Emily M. Huntsman, Liang-Bo Wang, Chet Birger, David I. Heiman, Qing Zhang, Mendy Miller, Yosef E. Maruvka, Nicholas J. Haradhvala, Anna Calinawan, Saveliy Belkin, Alexander Kerelsky, Karl R. Clauser, Karsten Krug, Shankha Satpathy, Samuel Payne, D.R. Mani, Michael A. Gillette, Saravana M. Dhanasekaran, Mathangi Thiagarajan, Mehdi Mesri, Henry Rodriguez, Ana I. Robles, Steven A. Carr, Alexander J. Lazar, François Aguet, Lewis C. Cantley, Li Ding, Gad Getz, Eunkyung An, Meenakshi Anurag, Jasmin Bavarva, Michael J. Birrer, Özgün Babur, Song Cao, Michele Ceccarelli, Daniel W. Chan, Arul M. Chinnaiyan, Hanbyul Cho, Shrabanti Chowdhury, Marcin Cieślik, Antonio Colaprico, Steven A. Carr, Felipe da Veiga Leprevost, Corbin Day, Marcin J. Domagalski, Yongchao Dou, Brian J. Druker, Nathan Edwards, Matthew J. Ellis, David Fenyö, Steven M. Foltz, Alicia Francis, Tania J González-Robles, Sara J.C. Gosline, Zeynep H. Gümüş, Tara Hiltke, Runyu Hong, Galen Hostetter, Yingwei Hu, Chen Huang, Antonio Iavarone, Eric J. Jaehnig, Scott Jewel, Jiayi Ji, Wen Jiang, Lizabeth Katsnelson, Karen A. Ketchum, Iga Kołodziejczak, Chandan Kumar‐Sinha, Karsten Krug, Jonathan T. Lei, Wen-Wei Liang, Yuxing Liao, Caleb M. Lindgren, Tao Liu, Wenke Liu, Weiping Ma, Wilson McKerrow, Mehdi Mesri, D.R. Mani, Alexey I. Nesvizhskii, Chelsea J. Newton, Robert Oldroyd, Gilbert S. Omenn, Amanda G. Paulovich, Francesca Petralia, Pietro Pugliese, Boris Reva, Karin Rodland, Kelly V. Ruggles, Dmitry Rykunov

    Vydáno 2023
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  16. 16
    Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin

    Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin Autor Wen-Wei Liang, Rita Jui-Hsien Lu, Reyka G. Jayasinghe, Steven M. Foltz, Eduard Porta‐Pardo, Yifat Geffen, Michael C. Wendl, Rossana Lazcano, Iga Kołodziejczak, Yizhe Song, Akshay Govindan, Elizabeth G. Demicco, Xiang Li, Yize Li, Sunantha Sethuraman, Samuel Payne, David Fenyö, Henry Rodriguez, Maciej Wiznerowicz, Hui Shen, D.R. Mani, Karin Rodland, Alexander J. Lazar, Ana I. Robles, Li Ding, François Aguet, Yo Akiyama, Eunkyung An, Shankara Anand, Meenakshi Anurag, Özgün Babur, Jasmin Bavarva, Chet Birger, Michael J. Birrer, Anna Calinawan, Lewis C. Cantley, Song Cao, Steve Carr, Michele Ceccarelli, Daniel Chan, Arul M. Chinnaiyan, Hanbyul Cho, Shrabanti Chowdhury, Marcin Cieślik, Karl R. Clauser, Antonio Colaprico, Daniel Cui Zhou, Felipe da Veiga Leprevost, Corbin Day, Saravana M. Dhanasekaran, Marcin J. Domagalski, Yongchao Dou, Brian J. Druker, Nathan Edwards, Matthew J. Ellis, Myvizhi Esai Selvan, Alicia Francis, Gad Getz, Michael A. Gillette, Tania Gonzalez Robles, Sara J.C. Gosline, Zeynep H. Gümüş, David I. Heiman, Tara Hiltke, Runyu Hong, Galen Hostetter, Yingwei Hu, Chen Huang, Emily M. Huntsman, Antonio Iavarone, Eric J. Jaehnig, Scott Jewel, Jiayi Ji, Wen Jiang, Jared L. Johnson, Lizabeth Katsnelson, Karen A. Ketchum, Karsten Krug, Chandan Kumar‐Sinha, Jonathan T. Lei, Yuxing Liao, Caleb M. Lindgren, Tao Liu, Wenke Liu, Weiping Ma, Fernanda Martins Rodrigues, Wilson H. McKerrow, Mehdi Mesri, Alexey I. Nesvizhskii, Chelsea J. Newton, Robert Oldroyd, Gilbert S. Omenn, Amanda G. Paulovich, Francesca Petralia, Pietro Pugliese, Boris Reva, Kelly V. Ruggles, Dmitry Rykunov, Shankha Satpathy, Sara R. Savage

    Vydáno 2023
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  17. 17
    Comprehensive proteogenomic characterization of rare kidney tumors

    Comprehensive proteogenomic characterization of rare kidney tumors Autor Ginny Xiaohe Li, Lijun Chen, Yi Hsiao, Rahul Mannan, Yuping Zhang, Jie Luo, Francesca Petralia, Hanbyul Cho, Noshad Hosseini, Felipe da Veiga Leprevost, Anna Calinawan, Yize Li, Shankara Anand, Aniket Dagar, Yifat Geffen, Chandan Kumar‐Sinha, Seema Chugh, Anne Le, Sean Ponce, Shenghao Guo, Cissy Zhang, Michael Schnaubelt, Nataly Naser Al Deen, Feng Chen, Wagma Caravan, Andrew Houston, Alex Hopkins, Chelsea J. Newton, Xiaoming Wang, Daniel A. Polasky, Sarah E. Haynes, Fengchao Yu, Xiaojun Jing, Siqi Chen, Ana I. Robles, Mehdi Mesri, Mathangi Thiagarajan, Eunkyung An, Gad Getz, W. Marston Linehan, Galen Hostetter, Scott D. Jewell, Daniel W. Chan, Pei Wang, Gilbert S. Omenn, Rohit Mehra, Christopher J. Ricketts, Li Ding, Arul M. Chinnaiyan, Marcin Cieślik, Saravana M. Dhanasekaran, Hui Zhang, Alexey I. Nesvizhskii, Alexander J. Lazar, Amanda G. Paulovich, Andrzej Antczak, Anthony R. Green, Avi Ma’ayan, Barb Pruetz, Bing Zhang, Boris Reva, Brian J. Druker, Charles A. Goldthwaite, Chet Birger, D.R. Mani, David Chesla, David Fenyö, Eric E. Schadt, George D. Wilson, Iga Kołodziejczak, Ivy John, Jason Hafron, Josh N. Vo, Kakhaber Zaalishvili, Karen A. Ketchum, Karin Rodland, Kristen Nyce, Maciej Wiznerowicz, Marcin J. Domagalski, Meenakshi Anurag, Melissa Borucki, Michael A. Gillette, Michael J. Birrer, Nathan Edwards, Negin Vatanian, Pamela VanderKolk, Peter B. McGarvey, Rajiv Dhir, Ratna R. Thangudu, Reese Crispen, Richard Smith, Samuel Payne, Sandra Cottingham, Shuang Cai, Steven A. Carr, Tao Liu, Toan Le, Weiping Ma, Xu Zhang, Lu Yin

    Vydáno 2024
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  18. 18
    A proteogenomic portrait of lung squamous cell carcinoma

    A proteogenomic portrait of lung squamous cell carcinoma Autor Shankha Satpathy, Karsten Krug, Pierre M. Jean Beltran, Sara R. Savage, Francesca Petralia, Chandan Kumar‐Sinha, Yongchao Dou, Boris Reva, M. Harry Kane, Shayan C. Avanessian, Suhas Vasaikar, Azra Krek, Jonathan T. Lei, Eric J. Jaehnig, Tatiana Omelchenko, Yifat Geffen, Erik J. Bergstrom, Vasileios Stathias, Karen E. Christianson, David I. Heiman, Marcin Cieślik, Song Cao, Xiaoyu Song, Jiayi Ji, Wenke Liu, Kai Li, Bo Wen, Yize Li, Zeynep H. Gümüş, Myvizhi Esai Selvan, Rama Soundararajan, Tanvi H. Visal, Maria Gabriela Raso, Edwin R. Parra, Özgün Babur, Pankaj Vats, Shankara Anand, Tobias Schraink, MacIntosh Cornwell, Fernanda Martins Rodrigues, Houxiang Zhu, Chia-Kuei Mo, Yuping Zhang, Felipe da Veiga Leprevost, Chen Huang, Arul M. Chinnaiyan, Matthew A. Wyczalkowski, Gilbert S. Omenn, Chelsea J. Newton, Stephan C. Schürer, Kelly V. Ruggles, David Fenyö, Scott D. Jewell, Mathangi Thiagarajan, Mehdi Mesri, Henry Rodriguez, Sendurai A. Mani, Namrata D. Udeshi, Gad Getz, James Suh, Qing Kay Li, Galen Hostetter, Paul K. Paik, Saravana M. Dhanasekaran, Ramaswamy Govindan, Li Ding, Ana I. Robles, Karl R. Clauser, Alexey I. Nesvizhskii, Pei Wang, Steven A. Carr, Bing Zhang, D.R. Mani, Michael A. Gillette, Alexander L. Green, Alfredo Molinolo, Alicia Francis, Amanda G. Paulovich, Andrii Karnuta, Antonio Colaprico, Barbara Hindenach, Barbara L. Pruetz, Bartosz Kubisa, Brian J. Druker, Carissa A. Huynh, Charles A. Goldthwaite, Chet Birger, Christopher R. Kinsinger, Corbin D. Jones, Dan Rohrer, Dana R. Valley, Daniel W. Chan, David Chesla, Donna E. Hansel, Elena V. Ponomareva, Elizabeth R. Duffy, Eric Burks, Eric E. Schadt, Eugene S. Fedorov, Eunkyung An

    Vydáno 2021
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  19. 19
    Pan-cancer proteogenomics characterization of tumor immunity

    Pan-cancer proteogenomics characterization of tumor immunity Autor Francesca Petralia, Weiping Ma, Tomer M. Yaron, Francesca Pia Caruso, Nicole Tignor, Joshua M. Wang, Daniel Charytonowicz, Jared L. Johnson, Emily M. Huntsman, Giacomo B. Marino, Anna Calinawan, John Erol Evangelista, Myvizhi Esai Selvan, Shrabanti Chowdhury, Dmitry Rykunov, Azra Krek, Xiaoyu Song, Berk Turhan, Karen E. Christianson, David A. Lewis, Eden Z. Deng, Daniel Clarke, Jeffrey R. Whiteaker, Jacob J. Kennedy, Lei Zhao, Rossana Lazcano Segura, Harsh Vardhan Batra, Maria Gabriela Raso, Edwin R. Parra, Rama Soundararajan, Ximing Tang, Yize Li, Xinpei Yi, Shankha Satpathy, Ying Wang, Maciej Wiznerowicz, Tania J González-Robles, Antonio Iavarone, Sara J.C. Gosline, Boris Reva, Ana I. Robles, Alexey I. Nesvizhskii, D.R. Mani, Michael A. Gillette, Robert J. Klein, Marcin Cieślik, Bing Zhang, Amanda G. Paulovich, Robert Sebra, Zeynep H. Gümüş, Galen Hostetter, David Fenyö, Gilbert S. Omenn, Lewis C. Cantley, Avi Ma’ayan, Alexander J. Lazar, Michele Ceccarelli, Pei Wang, Jennifer G. Abelin, François Aguet, Yo Akiyama, Eunkyung An, Shankara Anand, Meenakshi Anurag, Özgün Babur, Jasmin Bavarva, Chet Birger, Michael J. Birrer, Song Cao, Steven A. Carr, Daniel W. Chan, Arul M. Chinnaiyan, Hanbyul Cho, Karl R. Clauser, Antonio Colaprico, Daniel Cui Zhou, Felipe da Veiga Leprevost, Corbin Day, Saravana M. Dhanasekaran, Li Ding, Marcin J. Domagalski, Yongchao Dou, Brian J. Druker, Nathan Edwards, Matthew J. Ellis, Steven M. Foltz, Alicia Francis, Yifat Geffen, Gad Getz, David I. Heiman, Runyu Hong, Yingwei Hu, Chen Huang, Eric J. Jaehnig, Scott D. Jewell, Jiayi Ji, Wen Jiang, Lizabeth Katsnelson, Karen A. Ketchum, Iga Kołodziejczak

    Vydáno 2024
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