Søgeresultater - Chandra Sekhar Pedamallu

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  1. 1
    Faster Protein Splicing with the Nostoc punctiforme DnaE Intein Using Non-native Extein Residues

    Faster Protein Splicing with the Nostoc punctiforme DnaE Intein Using Non-native Extein Residues af Manoj Cheriyan, Chandra Sekhar Pedamallu, Kazuo Tori, Francine B. Perler

    Udgivet 2013
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  2. 2
    GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts

    GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts af Mark Walker, Chandra Sekhar Pedamallu, Akinyemi I. Ojesina, Susan Bullman, Ted Sharpe, Christopher W. Whelan, Matthew Meyerson

    Udgivet 2018
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  3. 3
    PathSeq: software to identify or discover microbes by deep sequencing of human tissue

    PathSeq: software to identify or discover microbes by deep sequencing of human tissue af Aleksandar D. Kostic, Akinyemi I. Ojesina, Chandra Sekhar Pedamallu, Joonil Jung, Roel G.W. Verhaak, Gad Getz, Matthew Meyerson

    Udgivet 2011
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  4. 4
    Brief Report: In Search of a Candidate Pathogen for Giant Cell Arteritis: Sequencing‐Based Characterization of the Giant Cell Arteritis Microbiome

    Brief Report: In Search of a Candidate Pathogen for Giant Cell Arteritis: Sequencing‐Based Characterization of the Giant Cell Arteritis Microbiome af Ami S. Bhatt, Veronica E. Manzo, Chandra Sekhar Pedamallu, Fujiko Duke, Diana Cai, Don C. Bienfang, Robert F. Padera, Matthew Meyerson, William P. Docken

    Udgivet 2014
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  5. 5
    Dynamic Epigenetic Regulation by Menin During Pancreatic Islet Tumor Formation

    Dynamic Epigenetic Regulation by Menin During Pancreatic Islet Tumor Formation af Wenchu Lin, Hideo Watanabe, Shouyong Peng, Joshua M. Francis, Nathan O. Kaplan, Chandra Sekhar Pedamallu, Aruna Ramachandran, Agoston Agoston, Adam J. Bass, Matthew Meyerson

    Udgivet 2014
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  6. 6
    The tumor virus landscape of AIDS-related lymphomas

    The tumor virus landscape of AIDS-related lymphomas af Aaron Arvey, Akinyemi I. Ojesina, Chandra Sekhar Pedamallu, Gianna Ballon, Joonil Jung, Fujiko Duke, Lorenzo Leoncini, Giulia De Falco, Eric Bressman, Wayne Tam, Amy Chadburn, Matthew Meyerson, Ethel Cesarman

    Udgivet 2015
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  7. 7
    Identification and characterization of an alternative cancer-derived PD-L1 splice variant

    Identification and characterization of an alternative cancer-derived PD-L1 splice variant af Nadia B. Hassounah, Venkat S. Malladi, Yi Huang, Samuel S. Freeman, Ellen M. Beauchamp, Shohei Koyama, Nicholas Souders, Sunil Martin, Glenn Dranoff, Kwok‐Kin Wong, Chandra Sekhar Pedamallu, Peter S. Hammerman, Esra A. Akbay

    Udgivet 2018
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  8. 8
    A novel totivirus and piscine reovirus (PRV) in Atlantic salmon (Salmo salar) with cardiomyopathy syndrome (CMS)

    A novel totivirus and piscine reovirus (PRV) in Atlantic salmon (Salmo salar) with cardiomyopathy syndrome (CMS) af Marie Løvoll, Jannicke Wiik‐Nielsen, Søren Grove, Christer R. Wiik-Nielsen, Anja Bråthen Kristoffersen, Randi Faller, Trygve T. Poppe, Joonil Jung, Chandra Sekhar Pedamallu, Alexander J. Nederbragt, Matthew Meyerson, Espen Rimstad, Torstein Tengs

    Udgivet 2010
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  9. 9
    A Pan-Cancer Analysis of Transcriptome Changes Associated with Somatic Mutations in U2AF1 Reveals Commonly Altered Splicing Events

    A Pan-Cancer Analysis of Transcriptome Changes Associated with Somatic Mutations in U2AF1 Reveals Commonly Altered Splicing Events af Angela N. Brooks, Peter S. Choi, Luc de Waal, Tanaz Sharifnia, Marcin Imieliński, Gordon Saksena, Chandra Sekhar Pedamallu, Andrey Sivachenko, Mara Rosenberg, Juliann Chmielecki, Michael S. Lawrence, David S. DeLuca, Gad Getz, Matthew Meyerson

    Udgivet 2014
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  10. 10
    Genetic modifiers of EGFR dependence in non-small cell lung cancer

    Genetic modifiers of EGFR dependence in non-small cell lung cancer af Tanaz Sharifnia, Victor Rusu, Federica Piccioni, Mukta Bagul, Marcin Imieliński, Andrew D. Cherniack, Chandra Sekhar Pedamallu, Bang Wong, Frederick H. Wilson, Levi A. Garraway, David Altshuler, Todd R. Golub, David E. Root, Aravind Subramanian, Matthew Meyerson

    Udgivet 2014
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  11. 11
    <i>EGFR</i> Variant Heterogeneity in Glioblastoma Resolved through Single-Nucleus Sequencing

    <i>EGFR</i> Variant Heterogeneity in Glioblastoma Resolved through Single-Nucleus Sequencing af Joshua M. Francis, Cheng‐Zhong Zhang, Cécile L. Maire, Joonil Jung, Veronica E. Manzo, Viktor A. Adalsteinsson, Heather Homer, Sam Haidar, Brendan Blumenstiel, Chandra Sekhar Pedamallu, Azra H. Ligon, J. Christopher Love, Matthew Meyerson, Keith L. Ligon

    Udgivet 2014
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  12. 12
    Inhibitor-Sensitive FGFR2 and FGFR3 Mutations in Lung Squamous Cell Carcinoma

    Inhibitor-Sensitive FGFR2 and FGFR3 Mutations in Lung Squamous Cell Carcinoma af Rachel G. Liao, Joonil Jung, Jeremy H. Tchaicha, Matthew D. Wilkerson, Andrey Sivachenko, Ellen M. Beauchamp, Qingsong Liu, Trevor J. Pugh, Chandra Sekhar Pedamallu, D. Neil Hayes, Nathanael S. Gray, Gad Getz, Kwok‐Kin Wong, Robert I. Haddad, Matthew Meyerson, Peter S. Hammerman

    Udgivet 2013
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  13. 13
    Genomic analysis identifies association of <i>Fusobacterium</i> with colorectal carcinoma

    Genomic analysis identifies association of <i>Fusobacterium</i> with colorectal carcinoma af Aleksandar D. Kostic, Dirk Gevers, Chandra Sekhar Pedamallu, Monia Michaud, Fujiko Duke, Ashlee M. Earl, Akinyemi I. Ojesina, Joonil Jung, Adam J. Bass, Josep Tabernero, José Baselga, Chen Liu, Ramesh A. Shivdasani, Shuji Ogino, Bruce W. Birren, Curtis Huttenhower, Wendy S. Garrett, Matthew Meyerson

    Udgivet 2011
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  14. 14
    Complete hematologic response of early T-cell progenitor acute lymphoblastic leukemia to the γ-secretase inhibitor BMS-906024: genetic and epigenetic findings in an outlier case

    Complete hematologic response of early T-cell progenitor acute lymphoblastic leukemia to the γ-secretase inhibitor BMS-906024: genetic and epigenetic findings in an outlier case af Birgit Knoechel, Ami S. Bhatt, Pan Li, Chandra Sekhar Pedamallu, Eric A. Severson, Alejandro Gutiérrez, David M. Dorfman, Frank C. Kuo, Michael Kluk, Andrew L. Kung, Patrick A. Zweidler‐McKay, Matthew Meyerson, Stephen C. Blacklow, Daniel J. DeAngelo, Jon C. Aster

    Udgivet 2015
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  15. 15
    SOX2 and p63 colocalize at genetic loci in squamous cell carcinomas

    SOX2 and p63 colocalize at genetic loci in squamous cell carcinomas af Hideo Watanabe, Qiuping Ma, Shouyong Peng, Guillaume Adelmant, Danielle Swain, Wenyu Song, Cameron Fox, Joshua M. Francis, Chandra Sekhar Pedamallu, David S. DeLuca, Angela N. Brooks, Su Wang, Jianwen Que, Anil K. Rustgi, Kwok‐Kin Wong, Keith L. Ligon, X. Shirley Liu, Jarrod A. Marto, Matthew Meyerson, Adam J. Bass

    Udgivet 2014
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  16. 16
    A comprehensive clinically informed map of dependencies in cancer cells and framework for target prioritization

    A comprehensive clinically informed map of dependencies in cancer cells and framework for target prioritization af Clare Pacini, Emma L. Duncan, Emanuel Gonçalves, James Gilbert, Shriram G. Bhosle, Stuart Horswell, Emre Karakoç, Howard Lightfoot, Edward Curry, Francesc Muyas, Monsif Bouaboula, Chandra Sekhar Pedamallu, Isidro Cortés‐Ciriano, Fiona M. Behan, Lykourgos‐Panagiotis Zalmas, Andrew Barthorpe, Hayley E. Francies, Steve Rowley, Jack Pollard, Pedro Beltrão, Leopold Parts, Francesco Iorio, Mathew J. Garnett

    Udgivet 2024
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  17. 17
    Integrative and Comparative Genomic Analysis of HPV-Positive and HPV-Negative Head and Neck Squamous Cell Carcinomas

    Integrative and Comparative Genomic Analysis of HPV-Positive and HPV-Negative Head and Neck Squamous Cell Carcinomas af Tanguy Y. Seiwert, Zhixiang Zuo, Michaela K. Keck, Arun Khattri, Chandra Sekhar Pedamallu, Thomas Stricker, Christopher D. Brown, Trevor J. Pugh, Petar Stojanov, Juok Cho, Michael S. Lawrence, Gad Getz, Johannes Brägelmann, Rebecca DeBoer, Ralph R. Weichselbaum, Alexander Langerman, Louis Portugal, Elizabeth A. Blair, Kerstin Stenson, Mark W. Lingen, Ezra E.W. Cohen, Everett E. Vokes, Kevin P. White, Peter S. Hammerman

    Udgivet 2014
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  18. 18
    Sequence-Based Discovery of<i>Bradyrhizobium enterica</i>in Cord Colitis Syndrome

    Sequence-Based Discovery of<i>Bradyrhizobium enterica</i>in Cord Colitis Syndrome af Ami S. Bhatt, Samuel S. Freeman, Alex F. Herrera, Chandra Sekhar Pedamallu, Dirk Gevers, Fujiko Duke, Joonil Jung, Monia Michaud, Bruce J. Walker, Sarah Young, Ashlee M. Earl, Aleksandar D. Kostic, Akinyemi I. Ojesina, Robert P. Hasserjian, Karen K. Ballen, Yi‐Bin Chen, Gabriela S. Hobbs, Joseph H. Antin, Robert J. Soiffer, Lindsey R. Baden, Wendy S. Garrett, Jason L. Hornick, Francisco M. Marty, Matthew Meyerson

    Udgivet 2013
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  19. 19
    Genome-scale analysis identifies paralog lethality as a vulnerability of chromosome 1p loss in cancer

    Genome-scale analysis identifies paralog lethality as a vulnerability of chromosome 1p loss in cancer af Srinivas R. Viswanathan, Marina F. Nogueira, Colin G. Buss, John M. Krill-Burger, Mathias J. Wawer, Edyta Małolepsza, Ashton C. Berger, Peter S. Choi, Juliann Shih, Alison M. Taylor, Benjamin Tanenbaum, Chandra Sekhar Pedamallu, Andrew D. Cherniack, Pablo Tamayo, Craig A. Strathdee, Kasper Lage, Steven A. Carr, Monica Schenone, Sangeeta N. Bhatia, Francisca Vázquez, Aviad Tsherniak, William C. Hahn, Matthew Meyerson

    Udgivet 2018
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  20. 20
    Analysis of <i>Fusobacterium</i> persistence and antibiotic response in colorectal cancer

    Analysis of <i>Fusobacterium</i> persistence and antibiotic response in colorectal cancer af Susan Bullman, Chandra Sekhar Pedamallu, Ewa Sicińska, Thomas E. Clancy, Xiaoyang Zhang, Diana Cai, Donna Neuberg, Katherine Huang, Fatima Guevara, Timothy Nelson, Otari Chipashvili, Timothy Hagan, Mark Walker, Aruna Ramachandran, Begoña Diosdado, Garazi Serna, Nuria Mulet, Stefania Landolfi, Santiago Ramón y Cajal, Roberta Fasani, Andrew J. Aguirre, Kimmie Ng, Elena Élez, Shuji Ogino, Josep Tabernero, Charles S. Fuchs, William C. Hahn, Paolo Nucíforo, Matthew Meyerson

    Udgivet 2017
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