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  1. 1
    Ameliorated de novo transcriptome assembly using Illumina paired end sequence data with Trinity Assembler

    Ameliorated de novo transcriptome assembly using Illumina paired end sequence data with Trinity Assembler by Kiran Bankar, Vivek Todur, Rohit Shukla, Madavan Vasudevan

    Published 2015
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  2. 2
    454 sequencing put to the test using the complex genome of barley

    454 sequencing put to the test using the complex genome of barley by Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy J. Close, Beat Keller, Nils Stein

    Published 2006
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  3. 3
    Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

    Chromosome-scale shotgun assembly using an in vitro method for long-range linkage by Nicholas H. Putnam, Brendan L. O’Connell, Jonathan C. Stites, Brandon Rice, Marco Blanchette, Robert Calef, Christopher J. Troll, Andrew J. Fields, Paul D. Hartley, Charles W. Sugnet, David Haussler, Daniel S. Rokhsar, Richard E. Green

    Published 2016
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  4. 4
    Aligning Short Sequencing Reads with Bowtie

    Aligning Short Sequencing Reads with Bowtie by Ben Langmead

    Published 2010
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  5. 5
    De Novo Assembly and Characterization of Fruit Transcriptome in Black Pepper (Piper nigrum)

    De Novo Assembly and Characterization of Fruit Transcriptome in Black Pepper (Piper nigrum) by Lisong Hu, Chaoyun Hao, Rui Fan, Baoduo Wu, Lehe Tan, Huasong Wu

    Published 2015
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  6. 6
    De novo assembly of a haplotype-resolved human genome

    De novo assembly of a haplotype-resolved human genome by Hongzhi Cao, Honglong Wu, Ruibang Luo, Shujia Huang, Yuhui Sun, Xin Tong, Yinlong Xie, Binghang Liu, Hailong Yang, Hancheng Zheng, Jian Li, Bo Li, Yu Wang, Fang� Yang, Peng Sun, Siyang Liu, Peng Gao, Haodong Huang, Jing Sun, Dan Chen, Guangzhu He, Weihua Huang, Zheng Huang, Yue Li, Laurent C. A. M. Tellier, Xiao Liu, Qiang Feng, Xun Xu, Xiuqing Zhang, Lars Bolund, Anders Krogh, Karsten Kristiansen, Radoje Drmanac, Snezana Drmanac, Rasmus Nielsen, Songgang Li, Jian Wang, Huanming Yang, Yingrui Li, Gane Ka‐Shu Wong, Jun Wang

    Published 2015
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  7. 7
    A complete bacterial genome assembled de novo using only nanopore sequencing data

    A complete bacterial genome assembled de novo using only nanopore sequencing data by Nicholas J. Loman, Joshua Quick, Jared T. Simpson

    Published 2015
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  8. 8
    An assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing data

    An assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing data by Huan Fan, Anthony R. Ives, Yann Surget‐Groba, Charles H. Cannon

    Published 2015
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  9. 9
    Multiplexed highly-accurate DNA sequencing of closely-related HIV-1 variants using continuous long reads from single molecule, real-time sequencing

    Multiplexed highly-accurate DNA sequencing of closely-related HIV-1 variants using continuous long reads from single molecule, real-time sequencing by Darío Dilernia, Jung-Ting Chien, Daniela C. Mónaco, Michael Brown, Zachary Ende, Martin J. Deymier, Ling Yue, Ellen E. Paxinos, Susan Allen, Alfredo Tirado‐Ramos, Eric Hunter

    Published 2015
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  10. 10
    Next Generation Sequence Assembly with AMOS

    Next Generation Sequence Assembly with AMOS by Todd J. Treangen, Dan Sommer, Florent Angly, Sergey Koren, Mihai Pop

    Published 2011
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  11. 11
    QuorUM: An Error Corrector for Illumina Reads

    QuorUM: An Error Corrector for Illumina Reads by Guillaume Marçais, James A. Yorke, Aleksey V. Zimin

    Published 2015
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  12. 12
    BARLEX – the Barley Draft Genome Explorer

    BARLEX – the Barley Draft Genome Explorer by Christian Colmsee, Sebastian Beier, Axel Himmelbach, Thomas Schmutzer, Nils Stein, Uwe Scholz, Martin Mascher

    Published 2015
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  13. 13
    Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

    Assembling large genomes with single-molecule sequencing and locality-sensitive hashing by Konstantin Berlin, Sergey Koren, Chen-Shan Chin, James Drake, Jane M. Landolin, Adam M. Phillippy

    Published 2015
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  14. 14
    Approaches to Fungal Genome Annotation

    Approaches to Fungal Genome Annotation by Brian J. Haas, Qiandong Zeng, Matthew D. Pearson, Christina A. Cuomo, Jennifer R. Wortman

    Published 2011
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  15. 15
    Exploring the Transcriptome Landscape of Pomegranate Fruit Peel for Natural Product Biosynthetic Gene and SSR Marker DiscoveryF

    Exploring the Transcriptome Landscape of Pomegranate Fruit Peel for Natural Product Biosynthetic Gene and SSR Marker DiscoveryF by Nadia N. Ono, Monica Britton, Joseph Fass, Charles M. Nicolet, Dawei Lin, Li Tian

    Published 2011
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  16. 16
    Advances in plant genome sequencing

    Advances in plant genome sequencing by John P. Hamilton, C. Robin Buell

    Published 2012
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    Revisão
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  17. 17
    A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes

    A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes by Holly B. Bratcher, Craig Corton, Keith A. Jolley, Julian Parkhill, Martin Maiden

    Published 2014
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  18. 18
    Bricks and blueprints: methods and standards for DNA assembly

    Bricks and blueprints: methods and standards for DNA assembly by Arturo Casini, Marko Storch, Geoff Baldwin, Tom Ellis

    Published 2015
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  19. 19
    An SNP-based saturated genetic map and QTL analysis of fruit-related traits in cucumber using specific-length amplified fragment (SLAF) sequencing

    An SNP-based saturated genetic map and QTL analysis of fruit-related traits in cucumber using specific-length amplified fragment (SLAF) sequencing by Qingzhen Wei, Yunzhu Wang, Xiaodong Qin, Yunxia Zhang, Zhentao Zhang, Jing Wang, Li Ji, Qunfeng Lou, Jinfeng Chen

    Published 2014
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  20. 20
    De novo sequencing and analysis of the cranberry fruit transcriptome to identify putative genes involved in flavonoid biosynthesis, transport and regulation

    De novo sequencing and analysis of the cranberry fruit transcriptome to identify putative genes involved in flavonoid biosynthesis, transport and regulation by Haiyue Sun, Yushan Liu, Yuzhuo Gai, Jinman Geng, Li Chen, Hongdi Liu, Limin Kang, Youwen Tian, Yadong Li

    Published 2015
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