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SAGA: a subgraph matching tool for biological graphs gan Yuanyuan Tian, Richard C. McEachin, Carlos Santos, David J. States, Jignesh M. Patel

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Manual curation is not sufficient for annotation of genomic databases gan William A. Baumgartner, Kevin Bretonnel Cohen, Lynne M. Fox, George K. Acquaah-Mensah, Lawrence Hunter

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A graph-based recovery and decomposition of Swanson’s hypothesis using semantic predications gan Delroy Cameron, Olivier Bodenreider, Hima Bindu Yalamanchili, Tu Thien Danh, Sreeram Vallabhaneni, Krishnaprasad Thirunarayan, Amit Sheth, Thomas C. Rindflesch

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Neuro-symbolic representation learning on biological knowledge graphs gan Mona Alshahrani, Asif M. Khan, Omar Maddouri, Akira R. Kinjo, Núria Queralt-Rosiñach, Robert Hoehndorf

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Semantic Health Knowledge Graph: Semantic Integration of Heterogeneous Medical Knowledge and Services gan Longxiang Shi, Shijian Li, Xiaoran Yang, Jiaheng Qi, Gang Pan, Binbin Zhou

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GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures gan Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Hongfei Lin, Jian Wang, Michel Dumontier

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A Literature-Based Knowledge Graph Embedding Method for Identifying Drug Repurposing Opportunities in Rare Diseases gan Daniel N. Sosa, Alexander Derry, Margaret Guo, Eric Wei, Connor Brinton, Russ B. Altman

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ROBOKOP: an abstraction layer and user interface for knowledge graphs to support question answering gan Kenneth D. Morton, Patrick Wang, Chris Bizon, Steven J. Cox, James P. Balhoff, Yaphet Kebede, Karamarie Fecho, Alexander Tropsha

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A Literature-Based Knowledge Graph Embedding Method for Identifying Drug Repurposing Opportunities in Rare Diseases gan Daniel N. Sosa, Alexander Derry, Margaret Guo, Eric Wei, Connor Brinton, Russ B. Altman

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Knowledge-Based Biomedical Data Science gan Tiffany J Callahan, Ignacio J. Tripodi, Harrison Pielke-Lombardo, Lawrence Hunter

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Constructing knowledge graphs and their biomedical applications gan David N. Nicholson, Casey S. Greene

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HKGB: An Inclusive, Extensible, Intelligent, Semi-auto-constructed Knowledge Graph Framework for Healthcare with Clinicians’ Expertise Incorporated gan Yong Zhang, Ming Sheng, Rui Zhou, Ye Wang, Guangjie Han, Han Zhang, Chunxiao Xing, Jing Dong

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Building a PubMed knowledge graph gan Jian Xu, Sunkyu Kim, Min Song, Minbyul Jeong, Donghyeon Kim, Jaewoo Kang, Justin F. Rousseau, Xin Li, Weijia Xu, Vetle I. Torvik, Yi Bu, Chongyan Chen, Islam Akef Ebeid, Daifeng Li, Ying Ding

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Diagnosis Method of Thyroid Disease Combining Knowledge Graph and Deep Learning gan Xuqing Chai

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Representing COVID-19 information in collaborative knowledge graphs: a study of Wikidata gan Houcemeddine Turki, Mohamed Ali Hadj Taieb, Thomas Shafee, Tiago Lubiana, Dariusz Jemielniak, Mohamed Ben Aouicha, José Emilio Labra Gayo, Mus’ab Banat, Diptanshu Das, Daniel Mietchen

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COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology gan Daniel Domingo‐Fernándéz, Shounak Baksi, Bruce Schultz, Yojana Gadiya, Reagon Karki, Tamara Raschka, Christian Ebeling, Martin Hofmann‐Apitius, Alpha Tom Kodamullil

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An integrative knowledge graph for rare diseases, derived from the Genetic and Rare Diseases Information Center (GARD) gan Qian Zhu, Ðắc-Trung Nguyễn, Ivan Grishagin, Noel Southall, Eric Sid, Anne Pariser

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Biomedical Event Extraction with Hierarchical Knowledge Graphs gan Kung-Hsiang Huang, Mu Yang, Nanyun Peng

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OWL2Vec*: embedding of OWL ontologies gan Jiaoyan Chen, Pan Hu, Ernesto Jiménez-Ruiz, Ole Magnus Holter, Denvar Antonyrajah, Ian Horrocks

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Multimodal reasoning based on knowledge graph embedding for specific diseases gan Chaoyu Zhu, Zhihao Yang, Xiaoqiong Xia, Nan Li, Fan Zhong, Lei Liu

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