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Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning Autor Babak Alipanahi, Andrew Delong, Matthew T. Weirauch, Brendan J. Frey

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Ameliorated de novo transcriptome assembly using Illumina paired end sequence data with Trinity Assembler Autor Kiran Bankar, Vivek Todur, Rohit Shukla, Madavan Vasudevan

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Robust gene expression and mutation analyses of RNA-sequencing of formalin-fixed diagnostic tumor samples Autor Stefan Graw, Richard Meier, Kay Minn, Clark Bloomer, Andrew K. Godwin, Brooke L. Fridley, Anda Vlad, Peter Beyerlein, Jeremy Chien

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Robustness of Next Generation Sequencing on Older Formalin-Fixed Paraffin-Embedded Tissue Autor Danielle M. Carrick, Michele G. Mehaffey, Michael C. Sachs, Sean F. Altekruse, Corinne E. Camalier, Rodrigo Chuaqui, Wendy Cozen, Biswajit Das, Brenda Y. Hernandez, Chih‐Jian Lih, Charles F. Lynch, Hala R. Makhlouf, Paul M. McGregor, Lisa M. McShane, JoyAnn Phillips Rohan, William D. Walsh, P. Mickey Williams, Elizabeth M. Gillanders, Leah E. Mechanic, Sheri D. Schully

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MapRepeat: an approach for effective assembly of repetitive regions in prokaryotic genomes Autor Diego Mariano, Felipe Luiz Pereira, Preetam Ghosh, Debmalya Barh, Henrique César Pereira Figueiredo, Artur Silva, Rommel Thiago Jucá Ramos, Vasco Azevedo

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CRISPR/Cas9-based generation of knockdown mice by intronic insertion of artificial microRNA using longer single-stranded DNA Autor Hiromi Miura, Channabasavaiah B. Gurumurthy, Takehito Sato, Masahiro Sato, Masato Ohtsuka

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Targeted polymerase chain reaction-based enrichment and next generation sequencing for diagnostic testing of congenital disorders of glycosylation Autor Melanie A. Jones, Shruti Bhide, Ephrem Chin, Bobby G. Ng, Devin Rhodenizer, Victor Wei Zhang, Jessica Sun, Alice Tanner, Hudson H. Freeze, Madhuri Hegde

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Validation of Next-Generation Sequencing of Entire Mitochondrial Genomes and the Diversity of Mitochondrial DNA Mutations in Oral Squamous Cell Carcinoma Autor Anita Kloss‐Brandstätter, Hansi Weißensteiner, Gertraud Erhart, Georg Schäfer, Lukas Forer, Sebastian Schönherr, Dominic Pacher, Christof Seifarth, Andrea Stöckl, Liane Fendt, Irma Sottsas, Helmut Klocker, Christian W. Huck, Michael Rasse, Florian Kronenberg, Frank Kloss

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DNA sequence of the US component of the varicella-zoster virus genome. Autor Andrew J. Davison

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Development and Validation of a Next-Generation Sequencing Assay for BRCA1 and BRCA2 Variants for the Clinical Laboratory Autor Charles M. Strom, Steven Rivera, Christopher Elzinga, Taraneh Angeloni, Sun Hee Rosenthal, Dana M. Goos-Root, Martin Siaw, Jamie L. Platt, Cory Braastadt, Linda Cheng, David A. Ross, Weimin Sun

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Genomes by design Autor Adrian D. Haimovich, Paul Muir, Farren J. Isaacs

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Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals Autor Masao Nagasaki, Jun Yasuda, Fumiki Katsuoka, Naoki Nariai, Kaname Kojima, Yosuke Kawai, Yumi Yamaguchi‐Kabata, Junji Yokozawa, Inaho Danjoh, Sakae Saito, Yukuto Sato, Takahiro Mimori, Kaoru Tsuda, Rumiko Saito, Xiaoqing Pan, Satoshi Nishikawa, Shin Ito, Yoko Kuroki, Osamu Tanabe, Nobuo Fuse, Shinichi Kuriyama, Hideyasu Kiyomoto, Atsushi Hozawa, Naoko Minegishi, James Douglas Engel, Kengo Kinoshita, Shigeo Kure, Nobuo Yaegashi, Akito Tsuboi, Fuji Nagami, Hiroshi Kawame, Hiroaki Tomita, Ichiro Tsuji, Jun Nakaya, Junichi Sugawara, Kichiya Suzuki, Masahiro Kikuya, Michiaki Abe, Naoki Nakaya, Noriko Osumi, Riu Yamashita, Soichi Ogishima, Takako Takai, Teiji Tominaga, Yasuyuki Taki, Yoichi Suzuki, Masayuki Yamamoto

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One-Step Multiplex PCR Strategy for Identification of Mutations by SSCP and DNA Sequencing Autor M. Lachtermacher, Héctor N. Seuánez, Hugo W. Moser, Kirby D. Smith

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Whole Exome Sequencing Reveals Mutations in Known Retinal Disease Genes in 33 out of 68 Israeli Families with Inherited Retinopathies Autor Avigail Beryozkin, Elia Shevah, Adva Kimchi, Liliana Mizrahi‐Meissonnier, Samer Khateb, Rinki Ratnapriya, Csilla H. Lazar, Anat Blumenfeld, Tamar Ben‐Yosef, Yitzhak Hemo, Jacob Pe’er, Eduard Averbuch, Michal Sagi, Alexis Boleda, Linn Gieser, Abraham Zlotogorski, Tzipora C. Falik‐Zaccai, Ola Alimi-Kasem, Samuel G. Jacobson, Itay Chowers, Anand Swaroop, Eyal Banin, Dror Sharon

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Precision medicine at Memorial Sloan Kettering Cancer Center: clinical next-generation sequencing enabling next-generation targeted therapy trials Autor David M. Hyman, David B. Solit, Maria E. Arcila, Donavan T. Cheng, Paul Sabbatini, José Baselga, Michael F. Berger, Marc Ladanyi

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Molecular Characterization of the Human T Cell Lymphotropic Virus Type 2 Long Terminal Repeat Region: A Discussion about Possible Influences at Viral Gene Expression Autor Fernanda Khouri Barreto, Felipe F.A. Rego, Loianna M. Fonseca, Bernardo Galvão-Castro-Filho, Théssika Hialla Almeida Araújo, Aline Cristina Andrade Mota-Miranda, Joana Paixão Monteiro-Cunha, Luíz Carlos Júnior Alcântara

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T-DNA integration: a mode of illegitimate recombination in plants. Autor R. Mayerhofer, Zsuzsanna Koncz–Kálmán, Christiane Nawrath, Guus Bakkeren, Andreas Crameri, Karel J. Angelis, G. P. Rédei, Jeff Schell, Barbara Höhn, Csaba Koncz

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Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing Autor Rebecca E. Colman, James M. Schupp, Nathan Hicks, David Smith, Jordan L. Buchhagen, Faramarz Valafar, Valeriu Crudu, Elena Romancenco, Ecaterina Noroc, Lynn Jackson, Donald G. Catanzaro, Timothy C. Rodwell, Antonino Catanzaro, Paul Keim, David M. Engelthaler

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PCR Template Preparation for Capillary DNA Sequencing Autor Wilson A. Silva, María Costa, Valéria Valente, Josane F. Sousa, Maria Luisa Paçó‐Larson, Enilza Maria Espreáfico, Solange Soares de Camargo, Emily Rodrigues Monteiro, Adriano de Jesus Holanda, Marco A. Zago, Andrew J.G. Simpson, Emmanuel Dias‐Neto

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Arrangement of a highly repeated DNA sequence in the genome and chromatin of the African green monkey. Autor Dinah S. Singer

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