Ohcanbohtosat

Proposed methods for testing and selecting the ERCC external RNA controls Dahkki Laura Reid

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Using ANOVA to Analyze Microarray Data Dahkki Gary A. Churchill

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Normalizing DNA Microarray Data Dahkki Martin Bilban, Lukas K. Buehler, Steven R. Head, Gernot Desoyé, Vito Quaranta

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Hybridization Cross-Reactivity within Homologous Gene Families on Glass cDNA Microarrays Dahkki Elizabeth Evertsz, Janice Au-Young, Michael Ruvolo, Abelyn Lim, Mark A. Reynolds

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De novo assembly of the Carcinus maenas transcriptome and characterization of innate immune system pathways Dahkki Bas Verbruggen, Lisa K. Bickley, Eduarda M. Santos, Charles R. Tyler, Grant D. Stentiford, Kelly S. Bateman, Ronny van Aerle

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Discovering biomarkers from gene expression data for predicting cancer subgroups using neural networks and relational fuzzy clustering Dahkki Nikhil R. Pal, Kripamoy Aguan, Animesh Sharma, S. Amari

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SMART amplification combined with cDNA size fractionation in order to obtain large full-length clones Dahkki Ruth Wellenreuther, Ingo Schupp, Annemarie Poustka, Stefan Wiemann

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Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences Dahkki Alexander F. Auch, Stefan R. Henz, Barbara R. Holland, Markus Göker

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Fast and sensitive multiple alignment of large genomic sequences Dahkki Michael Brudno, Michael A. Chapman, Berthold Göttgens, Serafim Batzoglou, Burkhard Morgenstern

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A new non-linear normalization method for reducing variability in DNA microarray experiments Dahkki Christopher T. Workman, Lars Juhl Jensen, Hanne Jarmer, Randy M. Berka, Laurent Gautier, Henrik Bjørn Nielser, Hans-Henrik Saxild, Claus Henrik Nielsen, Søren Brunak, Steen Knudsen

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Understanding the pathogenesis of Alzheimer’s disease: will RNA‐Seq realize the promise of transcriptomics? Dahkki Greg T. Sutherland, Michael Janitz, Jillian J. Kril

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Gene finding in novel genomes Dahkki Ian Korf

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Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations Dahkki Richard Shippy, Timothy J. Sendera, Randall Lockner, Chockalingam Palaniappan, Tamma Kaysser-Kranich, George S. Watts, John P. Alsobrook

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Alternative mapping of probes to genes for Affymetrix chips Dahkki Laurent Gautier, Morten Hylander Møller, Lennart Friis‐Hansen, Steen Knudsen

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Optimized LOWESS normalization parameter selection for DNA microarray data Dahkki John A Berger, Sampsa Hautaniemi, Anna‐Kaarina Järvinen, Henrik Edgren, S.K. Mitra, Jaakko Astola

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The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacte... Dahkki Iris Brune, Karina Brinkrolf, Jörn Kalinowski, Alfred Pühler, Andreas Tauch

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Core oxidative stress response in Aspergillus nidulans Dahkki Tamás Emri, Vera Etelka Szarvas, Erzsébet Orosz, Károly Antal, Hee-Soo Park, Kap‐Hoon Han, Jae‐Hyuk Yu, István Pócsi

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Design and implementation of microarray gene expression markup language (MAGE-ML) Dahkki Paul T. Spellman, Michael Miller, Jason Stewart, Charles Troup, Uğis Sarkans, Steve Chervitz, Derek Bernhart, Gavin Sherlock, Catherine A. Ball, Marc Lepage, Marcin Świątek, W.L. Marks, Jason Gonçalves, Scott Markel, Daniel Iordan, Mohammadreza Shojatalab, Angel Pizarro, Joe White, Robert Hubley, Eric W. Deutsch, Martin Senger, Bruce J. Aronow, Alan J. Robinson, Doug Bassett, Christian J. Stoeckert, Alvis Brāzma

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Ribosome profiling reveals translation control as a key mechanism generating differential gene expression in Trypanosoma cruzi Dahkki Pablo Smircich, Guillermo Eastman, Saloê Bispo, Marı́a Ana Duhagon, Eloise Pavão Guerra-Slompo, Beatríz Garat, Samuel Goldenberg, David J. Munroe, Bruno Dallagiovanna, Fabíola Holetz, José Sotelo‐Silveira

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Predicting DNA-binding sites of proteins from amino acid sequence Dahkki Changhui Yan, Michael Terribilini, Feihong Wu, Robert L. Jernigan, Drena Dobbs, Vasant Honavar

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