Resultats de la cerca

RNA Secondary Structure Prediction per David H. Mathews, Douglas H. Turner, Michael Zuker

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Apollo: a community resource for genome annotation editing per Ed Lee, Nomi L. Harris, Mark S. Gibson, Raymond Chetty, Suzanna Lewis

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Computing 1-D atomic densities in macromolecular simulations: The density profile tool for VMD per Toni Giorgino

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Chaste: A test-driven approach to software development for biological modelling per Joe Pitt‐Francis, Pras Pathmanathan, Miguel O. Bernabéu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip J. Murray, James M. Osborne, A. Walter, S. Jonathan Chapman, Alan Garny, Ingeborg M.M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan Whiteley, Helen M. Byrne, David J. Gavaghan

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DistMap: A Toolkit for Distributed Short Read Mapping on a Hadoop Cluster per Ram Vinay Pandey, Christian Schlötterer

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Methods and algorithms for statistical analysis of protein sequences. per Volker Brendel, Philipp Bücher, Illiah Nourbakhsh, B. Edwin Blaisdell, Samuel Karlin

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DIALIGN: finding local similarities by multiple sequence alignment. per Burkhard Morgenstern, Kornelie Frech, Andreas Dress, Thomas Werner

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MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit per Jens Roat Kultima, Shinichi Sunagawa, Junhua Li, Wei‐Neng Chen, Hua Chen, Daniel R. Mende, Manimozhiyan Arumugam, Qi Pan, Binghang Liu, Junjie Qin, Jun Wang, Peer Bork

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QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations per Jian Yang, Chengcheng Hu, Han Hu, Rongdong Yu, Zhen Xia, Xiuzi Ye, Jun Zhu

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POPTREE2: Software for Constructing Population Trees from Allele Frequency Data and Computing Other Population Statistics with Windows Interface per Naoko Takezaki, M Nei, Koichiro Tamura

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AUTO3DEM—an automated and high throughput program for image reconstruction of icosahedral particles per Xiaodong Yan, Robert S. Sinkovits, Timothy S. Baker

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BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences per Tatiana Tatusova, Thomas Madden

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Dendroscope: An interactive viewer for large phylogenetic trees per Daniel H. Huson, Daniel C. Richter, Christian Rausch, Tobias Dezulian, Markus Franz, Regula Rupp

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools per Julie Thompson, Toby J. Gibson, Frédéric Plewniak, François Jeanmougin, Desmond G. Higgins

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RNAstructure: software for RNA secondary structure prediction and analysis per Jessica S. Reuter, David H. Mathews

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BioLayout—an automatic graph layout algorithm for similarity visualization per Anton J. Enright, Christos Ouzounis

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BamView: viewing mapped read alignment data in the context of the reference sequence per Tim Carver, Ulrike Böhme, Thomas D. Otto, Julian Parkhill, Matthew Berriman

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limmaGUI: A graphical user interface for linear modeling of microarray data per James Wettenhall, Gordon K. Smyth

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InterProScan 5: genome-scale protein function classification per Philip Jones, David Binns, Hsin-Yu Chang, Matthew Fraser, Weizhong Li, Craig McAnulla, Hamish McWilliam, John Maslen, Alex Mitchell, Gift Nuka, Sebastien Pesseat, A. F. Quinn, Amaia Sangrador‐Vegas, Maxim Scheremetjew, Siew-Yit Yong, Rodrigo López, Sarah Hunter

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BEDTools: a flexible suite of utilities for comparing genomic features per Aaron R. Quinlan, Ira M. Hall

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