Principles of regulatory information conservation between mouse and human

Principles of regulatory information conservation between mouse and human

To broaden our understanding of the evolution of gene regulation mechanisms, we generated occupancy profiles for 34 orthologous transcription factors (TFs) in human–mouse erythroid progenitor, lymphoblast and embryonic stem-cell lines. By combining the genome-wide transcription factor occupancy repe...

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Xehetasun bibliografikoak
Egile Nagusiak:	Yong Cheng, Zhihai Ma, Bong Hyun Kim, Wei-Sheng Wu, Philip Cayting, Alan P. Boyle, Vasavi Sundaram, Xiaoyun Xing, Nergiz Doğan, Jingjing Li, Ghia Euskirchen, Shin Lin, Yiing Lin, Axel Visel, Trupti Kawli, Xinqiong Yang, Dorrelyn Patacsil, Cheryl A. Keller, Belinda Giardine, Anshul Kundaje, Ting Wang, L Pennacchio, Zhiping Weng, Ross C. Hardison, M Snyder
Formatua:	Artigo
Hizkuntza:	ingelesa
Argitaratua:	2014
Sarrera elektronikoa:	https://doi.org/10.1038/nature13985 https://www.nature.com/articles/nature13985.pdf
Etiketak:	Etiketa erantsi Etiketarik gabe, Izan zaitez lehena erregistro honi etiketa jartzen!

Antzeko izenburuak

Principles of regulatory information conservation between mouse and human
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Identification of STAT5A and STAT5B Target Genes in Human T Cells
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Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility
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Systemic and cell intrinsic roles of Gqα signaling in the regulation of innate immunity, oxidative stress, and longevity in Caenorhabditis elegans
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Systemic and cell intrinsic roles of Gqα signaling in the regulation of innate immunity, oxidative stress, and longevity in <i>Caenorhabditis elegans</i>
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S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data
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S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data
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Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility
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Integrative annotation of chromatin elements from ENCODE data
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Pseudomonas aeruginosa Suppresses Host Immunity by Activating the DAF-2 Insulin-Like Signaling Pathway in Caenorhabditis elegans
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S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types
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Mechanisms Underlying Adaptation to Life in Hydrogen Sulfide–Rich Environments
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Domain-adaptive neural networks improve cross-species prediction of transcription factor binding
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Domain-adaptive neural networks improve cross-species prediction of transcription factor binding
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Pleiotropic Roles of a Ribosomal Protein in Dictyostelium discoideum
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Limits of sequence and functional conservation
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GALA, a Database for Genomic Sequence Alignments and Annotations
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Integrated systems analysis reveals a molecular network underlying autism spectrum disorders
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TNFAIP8 promotes prostate cancer cell survival by inducing autophagy
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Enhancer identification through comparative genomics
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SWI/SNF Chromatin-remodeling Factors: Multiscale Analyses and Diverse Functions
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SWI/SNF Chromatin-remodeling Factors: Multiscale Analyses and Diverse Functions
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Integrated systems analysis reveals a molecular network underlying autism spectrum disorders
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Transposable element mediated innovation in gene regulatory landscapes of cells: Re-visiting the ‘gene-battery’ model
nork: Sundaram, Vasavi, et al.
Argitaratua: (2017)

Transposable elements as a potent source of diverse cis-regulatory sequences in mammalian genomes
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ChIP-ping the branches of the tree: functional genomics and the evolution of eukaryotic gene regulation
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Regulatory analysis of the C. elegans genome with spatiotemporal resolution
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Enhancer Identification through Comparative Genomics
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Argitaratua: (2007)

Genomic views of distant-acting enhancers
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Argitaratua: (2009)

Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation
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Dynamic Trans-Acting Factor Co-localization in Human Cells
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Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection
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