Principles of regulatory information conservation between mouse and human

Principles of regulatory information conservation between mouse and human

To broaden our understanding of the evolution of gene regulation mechanisms, we generated occupancy profiles for 34 orthologous transcription factors (TFs) in human–mouse erythroid progenitor, lymphoblast and embryonic stem-cell lines. By combining the genome-wide transcription factor occupancy repe...

وصف كامل

محفوظ في:

التفاصيل البيبلوغرافية
المؤلفون الرئيسيون:	Yong Cheng, Zhihai Ma, Bong Hyun Kim, Wei-Sheng Wu, Philip Cayting, Alan P. Boyle, Vasavi Sundaram, Xiaoyun Xing, Nergiz Doğan, Jingjing Li, Ghia Euskirchen, Shin Lin, Yiing Lin, Axel Visel, Trupti Kawli, Xinqiong Yang, Dorrelyn Patacsil, Cheryl A. Keller, Belinda Giardine, Anshul Kundaje, Ting Wang, L Pennacchio, Zhiping Weng, Ross C. Hardison, M Snyder
التنسيق:	Artigo
اللغة:	الإنجليزية
منشور في:	2014
الوصول للمادة أونلاين:	https://doi.org/10.1038/nature13985 https://www.nature.com/articles/nature13985.pdf
الوسوم:	إضافة وسم لا توجد وسوم, كن أول من يضع وسما على هذه التسجيلة!

مواد مشابهة

Principles of regulatory information conservation between mouse and human
حسب: Cheng, Yong, وآخرون
منشور في: (2014)

Identification of STAT5A and STAT5B Target Genes in Human T Cells
حسب: Kanai, Takahiro, وآخرون
منشور في: (2014)

Identification of STAT5A and STAT5B Target Genes in Human T Cells
حسب: Takahiro Kanai, وآخرون
منشور في: (2014)

Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility
حسب: Dogan, Nergiz, وآخرون
منشور في: (2015)

It takes nerves to fight infections: insights on neuro-immune interactions from C. elegans
حسب: Kawli, Trupti, وآخرون
منشور في: (2010)

Systemic and cell intrinsic roles of Gqα signaling in the regulation of innate immunity, oxidative stress, and longevity in Caenorhabditis elegans
حسب: Kawli, Trupti, وآخرون
منشور في: (2010)

Pseudomonas aeruginosa Suppresses Host Immunity by Activating the DAF-2 Insulin-Like Signaling Pathway in Caenorhabditis elegans
حسب: Eric Evans, وآخرون
منشور في: (2008)

Systemic and cell intrinsic roles of Gqα signaling in the regulation of innate immunity, oxidative stress, and longevity in <i>Caenorhabditis elegans</i>
حسب: Trupti Kawli, وآخرون
منشور في: (2010)

Widespread contribution of transposable elements to the innovation of gene regulatory networks
حسب: Sundaram, Vasavi, وآخرون
منشور في: (2014)

Nnf1p, Dsn1p, Mtw1p, and Nsl1p: a New Group of Proteins Important for Chromosome Segregation in Saccharomyces cerevisiae
حسب: Euskirchen, Ghia M.
منشور في: (2002)

Integrative annotation of chromatin elements from ENCODE data
حسب: Michael M. Hoffman, وآخرون
منشور في: (2012)

FM-test: a fuzzy-set-theory-based approach to differential gene expression data analysis
حسب: Liang, Lily R, وآخرون
منشور في: (2006)

S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data
حسب: Xiang, Guanjue, وآخرون
منشور في: (2020)

S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data
حسب: Guanjue Xiang, وآخرون
منشور في: (2020)

Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility
حسب: Nergiz Doğan, وآخرون
منشور في: (2015)

Integrative annotation of chromatin elements from ENCODE data
حسب: Hoffman, Michael M., وآخرون
منشور في: (2013)

Pseudomonas aeruginosa Suppresses Host Immunity by Activating the DAF-2 Insulin-Like Signaling Pathway in Caenorhabditis elegans
حسب: Evans, Eric A., وآخرون
منشور في: (2008)

S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types
حسب: Xiang, Guanjue, وآخرون
منشور في: (2021)

Mechanisms Underlying Adaptation to Life in Hydrogen Sulfide–Rich Environments
حسب: Kelley, Joanna L., وآخرون
منشور في: (2016)

Mechanisms Underlying Adaptation to Life in Hydrogen Sulfide–Rich Environments
حسب: Joanna L. Kelley, وآخرون
منشور في: (2016)

Domain-adaptive neural networks improve cross-species prediction of transcription factor binding
حسب: Cochran, Kelly, وآخرون
منشور في: (2022)

Domain-adaptive neural networks improve cross-species prediction of transcription factor binding
حسب: Kelly Cochran, وآخرون
منشور في: (2022)

Pleiotropic Roles of a Ribosomal Protein in Dictyostelium discoideum
حسب: Amarnath, Smita, وآخرون
منشور في: (2012)

Limits of sequence and functional conservation
حسب: Pennacchio, Len A., وآخرون
منشور في: (2010)

GALA, a Database for Genomic Sequence Alignments and Annotations
حسب: Giardine, Belinda, وآخرون
منشور في: (2003)

Integrated systems analysis reveals a molecular network underlying autism spectrum disorders
حسب: Li, Jingjing, وآخرون
منشور في: (2014)

TNFAIP8 promotes prostate cancer cell survival by inducing autophagy
حسب: Niture, Suryakant, وآخرون
منشور في: (2018)

Enhancer identification through comparative genomics
حسب: Axel Visel, وآخرون
منشور في: (2007)

SWI/SNF Chromatin-remodeling Factors: Multiscale Analyses and Diverse Functions
حسب: Euskirchen, Ghia, وآخرون
منشور في: (2012)

SWI/SNF Chromatin-remodeling Factors: Multiscale Analyses and Diverse Functions
حسب: Ghia Euskirchen, وآخرون
منشور في: (2012)

Integrated systems analysis reveals a molecular network underlying autism spectrum disorders
حسب: Jingjing Li, وآخرون
منشور في: (2014)

Transposable element mediated innovation in gene regulatory landscapes of cells: Re-visiting the ‘gene-battery’ model
حسب: Sundaram, Vasavi, وآخرون
منشور في: (2017)

Transposable elements as a potent source of diverse cis-regulatory sequences in mammalian genomes
حسب: Sundaram, Vasavi, وآخرون
منشور في: (2020)

ChIP-ping the branches of the tree: functional genomics and the evolution of eukaryotic gene regulation
حسب: Marinov, Georgi K, وآخرون
منشور في: (2018)

Regulatory analysis of the C. elegans genome with spatiotemporal resolution
حسب: Carlos L. Araya, وآخرون
منشور في: (2014)

Enhancer Identification through Comparative Genomics
حسب: Visel, Axel, وآخرون
منشور في: (2007)

Genomic views of distant-acting enhancers
حسب: Axel Visel, وآخرون
منشور في: (2009)

Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation
حسب: Caroline Bartman, وآخرون
منشور في: (2018)

Dynamic Trans-Acting Factor Co-localization in Human Cells
حسب: Xie, Dan, وآخرون
منشور في: (2013)

Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection
حسب: Zhang, Qi, وآخرون
منشور في: (2016)