Ngā hua rapu - Zimin, Aleksey

The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies mā Zimin, Aleksey V., Salzberg, Steven L.

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The SAMBA tool uses long reads to improve the contiguity of genome assemblies mā Zimin, Aleksey V., Salzberg, Steven L.

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QuorUM: An Error Corrector for Illumina Reads mā Marçais, Guillaume, Yorke, James A., Zimin, Aleksey

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Evolution of transcriptional networks in yeast: alternative teams of transcriptional factors for different species mā Muñoz, Adriana, Santos Muñoz, Daniella, Zimin, Aleksey, Yorke, James A.

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Human contamination in bacterial genomes has created thousands of spurious proteins mā Breitwieser, Florian P., Pertea, Mihaela, Zimin, Aleksey V., Salzberg, Steven L.

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Chromosome-Scale Assembly of the Bread Wheat Genome Reveals Thousands of Additional Gene Copies mā Alonge, Michael, Shumate, Alaina, Puiu, Daniela, Zimin, Aleksey V., Salzberg, Steven L.

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The MaSuRCA genome assembler mā Zimin, Aleksey V., Marçais, Guillaume, Puiu, Daniela, Roberts, Michael, Salzberg, Steven L., Yorke, James A.

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The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum mā Zimin, Aleksey V, Puiu, Daniela, Hall, Richard, Kingan, Sarah, Clavijo, Bernardo J, Salzberg, Steven L

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MUMmer4: A fast and versatile genome alignment system mā Marçais, Guillaume, Delcher, Arthur L., Phillippy, Adam M., Coston, Rachel, Salzberg, Steven L., Zimin, Aleksey

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Transcriptome assembly from long-read RNA-seq alignments with StringTie2 mā Kovaka, Sam, Zimin, Aleksey V., Pertea, Geo M., Razaghi, Roham, Salzberg, Steven L., Pertea, Mihaela

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The genome of the American groundhog, Marmota monax mā Puiu, Daniela, Zimin, Aleksey, Shumate, Alaina, Ge, Yuchen, Qiu, Jiabin, Bhaskaran, Manoj, Salzberg, Steven L.

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Mis-Assembled “Segmental Duplications” in Two Versions of the Bos taurus Genome mā Zimin, Aleksey V., Kelley, David R., Roberts, Michael, Marçais, Guillaume, Salzberg, Steven L., Yorke, James A.

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A reference-quality, fully annotated genome from a Puerto Rican individual mā Zimin, Aleksey V, Shumate, Alaina, Shinder, Ida, Heinz, Jakob, Puiu, Daniela, Pertea, Mihaela, Salzberg, Steven L

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Improving Phrap-Based Assembly of the Rat Using “Reliable” Overlaps mā Roberts, Michael, Zimin, Aleksey V., Hayes, Wayne, Hunt, Brian R., Ustun, Cevat, White, James R., Havlak, Paul, Yorke, James

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Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm mā Zimin, Aleksey V., Puiu, Daniela, Luo, Ming-Cheng, Zhu, Tingting, Koren, Sergey, Marçais, Guillaume, Yorke, James A., Dvořák, Jan, Salzberg, Steven L.

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A pseudomolecule assembly of the Rocky Mountain elk genome mā Masonbrink, Rick E., Alt, David, Bayles, Darrell O., Boggiatto, Paola, Edwards, William, Tatum, Fred, Williams, Jeffrey, Wilson-Welder, Jennifer, Zimin, Aleksey, Severin, Andrew, Olsen, Steven

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An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing mā Zimin, Aleksey V., Stevens, Kristian A., Crepeau, Marc W., Puiu, Daniela, Wegrzyn, Jill L., Yorke, James A., Langley, Charles H., Neale, David B., Salzberg, Steven L.

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Erratum to: An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing mā Zimin, Aleksey V., Stevens, Kristian A., Crepeau, Marc W., Puiu, Daniela, Wegrzyn, Jill L., Yorke, James A., Langley, Charles H., Neale, David B., Salzberg, Steven L.

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Assembly and annotation of an Ashkenazi human reference genome mā Shumate, Alaina, Zimin, Aleksey V., Sherman, Rachel M., Puiu, Daniela, Wagner, Justin M., Olson, Nathan D., Pertea, Mihaela, Salit, Marc L., Zook, Justin M., Salzberg, Steven L.

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Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing mā Read, Andrew C., Moscou, Matthew J., Zimin, Aleksey V., Pertea, Geo, Meyer, Rachel S., Purugganan, Michael D., Leach, Jan E., Triplett, Lindsay R., Salzberg, Steven L., Bogdanove, Adam J.

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