Rezultati - Yoshiki Vázquez‐Baeza

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  1. 1
    EMPeror: a tool for visualizing high-throughput microbial community data

    EMPeror: a tool for visualizing high-throughput microbial community data od Yoshiki Vázquez‐Baeza, Meg Pirrung, Antonio González, Rob Knight

    Izdano 2013
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  2. 2
    Avoiding Pandemic Fears in the Subway and Conquering the Platypus

    Avoiding Pandemic Fears in the Subway and Conquering the Platypus od Antonio González, Yoshiki Vázquez‐Baeza, James Pettengill, Andrea Ottesen, Daniel McDonald, Rob Knight

    Izdano 2016
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  3. 3
    Uniform Manifold Approximation and Projection (UMAP) Reveals Composite Patterns and Resolves Visualization Artifacts in Microbiome Data

    Uniform Manifold Approximation and Projection (UMAP) Reveals Composite Patterns and Resolves Visualization Artifacts in Microbiome Data od George Armstrong, Cameron Martino, Gibraan Rahman, Antonio González, Yoshiki Vázquez‐Baeza, Gal Mishne, Rob Knight

    Izdano 2021
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  4. 4
    Tiny microbes, enormous impacts: what matters in gut microbiome studies?

    Tiny microbes, enormous impacts: what matters in gut microbiome studies? od Justine W. Debelius, Se Jin Song, Yoshiki Vázquez‐Baeza, Zhenjiang Zech Xu, Antonio González, Rob Knight

    Izdano 2016
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  5. 5
    Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk

    Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk od Tanya T. Nguyen, Tomasz Kościółek, Rebecca Daly, Yoshiki Vázquez‐Baeza, Austin D. Swafford, Rob Knight, Dilip V. Jeste

    Izdano 2020
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  6. 6
    Meta-analyses of studies of the human microbiota

    Meta-analyses of studies of the human microbiota od Catherine Lozupone, Jesse Stombaugh, Antonio González, Gail Ackermann, Doug Wendel, Yoshiki Vázquez‐Baeza, Janet Jansson, Jeffrey I. Gordon, Rob Knight

    Izdano 2013
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  7. 7
    Striped UniFrac: enabling microbiome analysis at unprecedented scale

    Striped UniFrac: enabling microbiome analysis at unprecedented scale od Daniel McDonald, Yoshiki Vázquez‐Baeza, David Koslicki, Jason McClelland, Nicolai Reeve, Zhenjiang Zech Xu, Antonio González, Rob Knight

    Izdano 2018
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  8. 8
    Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease

    Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease od Robert H. Mills, Yoshiki Vázquez‐Baeza, Qiyun Zhu, Lingjing Jiang, James Gaffney, Greg Humphrey, Larry Smarr, Rob Knight, David J. Gonzalez

    Izdano 2019
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  9. 9
    Effects of library size variance, sparsity, and compositionality on the analysis of microbiome data

    Effects of library size variance, sparsity, and compositionality on the analysis of microbiome data od Sophie Weiss, Zhenjiang Zech Xu, Amnon Amir, Shyamal Peddada, Kyle Bittinger, Antonio González, Catherine Lozupone, Jesse Zaneveld, Yoshiki Vázquez‐Baeza, Amanda Birmingham, Rob Knight

    Izdano 2015
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  10. 10
    Impacts of the Human Gut Microbiome on Therapeutics

    Impacts of the Human Gut Microbiome on Therapeutics od Yoshiki Vázquez‐Baeza, Chris Callewaert, Justine W. Debelius, Embriette R. Hyde, Clarisse Marotz, James T. Morton, Austin D. Swafford, Alison Vrbanac, Pieter C. Dorrestein, Rob Knight

    Izdano 2017
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  11. 11
    Challenges in benchmarking metagenomic profilers

    Challenges in benchmarking metagenomic profilers od Zheng Sun, Shi Huang, Meng Zhang, Qiyun Zhu, Niina Haiminen, Anna Paola Carrieri, Yoshiki Vázquez‐Baeza, Laxmi Parida, Ho‐Cheol Kim, Rob Knight, Yang‐Yu Liu

    Izdano 2021
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  12. 12
    Normalization and microbial differential abundance strategies depend upon data characteristics

    Normalization and microbial differential abundance strategies depend upon data characteristics od Sophie Weiss, Zhenjiang Zech Xu, Shyamal D. Peddada, Amnon Amir, Kyle Bittinger, Antonio González, Catherine Lozupone, Jesse Zaneveld, Yoshiki Vázquez‐Baeza, Amanda Birmingham, Embriette R. Hyde, Rob Knight

    Izdano 2017
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  13. 13
    Context-aware dimensionality reduction deconvolutes gut microbial community dynamics

    Context-aware dimensionality reduction deconvolutes gut microbial community dynamics od Cameron Martino, Liat Shenhav, Clarisse Marotz, George Armstrong, Daniel McDonald, Yoshiki Vázquez‐Baeza, James T. Morton, Lingjing Jiang, María Gloria Domínguez-Bello, Austin D. Swafford, Eran Halperin, Rob Knight

    Izdano 2020
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  14. 14
    Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection

    Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection od Alexa R. Weingarden, Antonio González Ariza, Yoshiki Vázquez‐Baeza, Sophie Weiss, Gregory Humphry, Donna Berg-Lyons, Dan Knights, Tatsuya Unno, Aleh Bobr, Johnthomas Kang, Alexander Khoruts, Rob Knight, Michael J. Sadowsky

    Izdano 2015
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  15. 15
    Temporal variability is a personalized feature of the human microbiome

    Temporal variability is a personalized feature of the human microbiome od Gilberto E. Flores, J. Gregory Caporaso, Jessica B. Henley, Jai Ram Rideout, Daniel Domogala, John Chase, Jonathan W. Leff, Yoshiki Vázquez‐Baeza, Antonio González, Rob Knight, Robert R. Dunn, Noah Fierer

    Izdano 2014
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  16. 16
    Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians

    Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians od Celeste Allaband, Daniel McDonald, Yoshiki Vázquez‐Baeza, Jeremiah J. Minich, Anupriya Tripathi, David A. Brenner, Rohit Loomba, Larry Smarr, William J. Sandborn, Bernd Schnabl, Pieter C. Dorrestein, Amir Zarrinpar, Rob Knight

    Izdano 2018
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  17. 17
    QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data

    QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data od Mehrbod Estaki, Lingjing Jiang, Nicholas A. Bokulich, Daniel McDonald, Antonio González, Tomasz Kościółek, Cameron Martino, Qiyun Zhu, Amanda Birmingham, Yoshiki Vázquez‐Baeza, Matthew R. Dillon, Evan Bolyen, J. Gregory Caporaso, Rob Knight

    Izdano 2020
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  18. 18
    Compositional and genetic alterations in Graves’ disease gut microbiome reveal specific diagnostic biomarkers

    Compositional and genetic alterations in Graves’ disease gut microbiome reveal specific diagnostic biomarkers od Qiyun Zhu, Qiangchuan Hou, Shi Huang, Qianying Ou, Dongxue Huo, Yoshiki Vázquez‐Baeza, Chaoping Cen, Victor Cantu, Mehrbod Estaki, Haibo Chang, Pedro Belda‐Ferre, Ho‐Cheol Kim, Kaining Chen, Rob Knight, Jiachao Zhang

    Izdano 2021
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  19. 19
    Dynamics of the human gut microbiome in inflammatory bowel disease

    Dynamics of the human gut microbiome in inflammatory bowel disease od Jonas Halfvarson, Colin Brislawn, Regina Lamendella, Yoshiki Vázquez‐Baeza, William A. Walters, Lisa Bramer, Mauro D’Amato, Ferdinando Bonfiglio, Daniel McDonald, Antonio González, Erin E. McClure, Mitchell Dunklebarger, Rob Knight, Janet Jansson

    Izdano 2017
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  20. 20
    Creating a 3D microbial and chemical snapshot of a human habitat

    Creating a 3D microbial and chemical snapshot of a human habitat od Clifford A. Kapono, James T. Morton, Amina Bouslimani, Alexey V. Melnik, Kayla Orlinsky, Tal Luzzatto‐Knaan, Neha Garg, Yoshiki Vázquez‐Baeza, Ivan Protsyuk, Stefan Janssen, Qiyun Zhu, Theodore Alexandrov, Larry Smarr, Rob Knight, Pieter C. Dorrestein

    Izdano 2018
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