检索结果 - Yan, Chengfei

Fully Blind Docking at the Atomic Level for Protein-Peptide Complex Structure Prediction 由 Yan, Chengfei, Xu, Xianjin, Zou, Xiaoqin

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Improving Binding Mode and Binding Affinity Predictions of Docking by Ligand-based Search of Protein Conformations: Evaluation in D3R Grand Challenge 2015 由 Xu, Xianjin, Yan, Chengfei, Zou, Xiaoqin

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MDockPeP: An ab-initio protein-peptide docking server 由 Xu, Xianjin, Yan, Chengfei, Zou, Xiaoqin

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Automated large-scale file preparation, docking, and scoring: Evaluation of ITScore and STScore using the 2012 Community Structure-Activity Resource Benchmark 由 Grinter, Sam Z., Yan, Chengfei, Huang, Sheng-You, Jiang, Lin, Zou, Xiaoqin

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A chemical genetic approach demonstrates that MPK3/MPK6 activation and NADPH oxidase-mediated oxidative burst are two independent signaling events in plant immunity 由 Xu, Juan, Xie, Jie, Yan, Chengfei, Zou, Xiaoqin, Ren, Dongtao, Zhang, Shuqun

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Iterative Knowledge-based Scoring Functions Derived from Rigid and Flexible Decoy Structures: Evaluation with the 2013 and 2014 CSAR Benchmarks 由 Yan, Chengfei, Grinter, Sam Z., Merideth, Benjamin Ryan, Ma, Zhiwei, Zou, Xiaoqin

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HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps 由 Yan, Koon-Kiu, Yardımcı, Galip Gürkan, Yan, Chengfei, Noble, William S, Gerstein, Mark

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Performance of MDockPP in CAPRI Rounds 28–29 and 31–35 including the prediction of water-mediated interactions 由 Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Ma, Zhiwei, Grinter, Sam Z., Zou, Xiaoqin

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Inclusion of the orientational entropic effect and low-resolution experimental information for protein-protein docking in CAPRI 由 Huang, Sheng-You, Yan, Chengfei, Grinter, Sam Z., Chang, Shan, Jiang, Lin, Zou, Xiaoqin

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Genomics and data science: an application within an umbrella 由 Navarro, Fábio C. P., Mohsen, Hussein, Yan, Chengfei, Li, Shantao, Gu, Mengting, Meyerson, William, Gerstein, Mark

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Supervised enhancer prediction with epigenetic pattern recognition and targeted validation 由 Sethi, Anurag, Gu, Mengting, Gumusgoz, Emrah, Chan, Landon, Yan, Koon-Kiu, Rozowsky, Joel, Barozzi, Iros, Afzal, Veena, Akiyama, Jennifer A., Plajzer-Frick, Ingrid, Yan, Chengfei, Novak, Catherine S., Kato, Momoe, Garvin, Tyler H., Pham, Quan, Harrington, Anne, Mannion, Brandon J., Lee, Elizabeth A., Fukuda-Yuzawa, Yoko, Visel, Axel, Dickel, Diane E., Yip, Kevin Y., Sutton, Richard, Pennacchio, Len A., Gerstein, Mark

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Comprehensive functional genomic resource and integrative model for the human brain 由 Wang, Daifeng, Liu, Shuang, Warrell, Jonathan, Won, Hyejung, Shi, Xu, Navarro, Fabio C. P., Clarke, Declan, Gu, Mengting, Emani, Prashant, Yang, Yucheng T., Xu, Min, Gandal, Michael J., Lou, Shaoke, Zhang, Jing, Park, Jonathan J., Yan, Chengfei, Rhie, Suhn Kyong, Manakongtreecheep, Kasidet, Zhou, Holly, Nathan, Aparna, Peters, Mette, Mattei, Eugenio, Fitzgerald, Dominic, Brunetti, Tonya, Moore, Jill, Jiang, Yan, Girdhar, Kiran, Hoffman, Gabriel E., Kalayci, Selim, Gümüş, Zeynep H., Crawford, Gregory E., Roussos, Panos, Akbarian, Schahram, Jaffe, Andrew E., White, Kevin P., Weng, Zhiping, Sestan, Nenad, Geschwind, Daniel H., Knowles, James A., Gerstein, Mark B.

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Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment 由 Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen‐You, Schneidman‐Duhovny, Dina, Sali, Andrej, Segura, Joan, Fernandez‐Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan‐Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie‐Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben‐Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung‐Rae, Roy, Amit, Han, Xusi, Esquivel‐Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero‐Durana, Miguel, Jiménez‐García, Brian, Moal, Iain H., Férnandez‐Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Roy Burman, Shourya S., Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.

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