Bilaketaren emaitzak - Wim Vranken

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  1. 1
    An Evolutionary View on Disulfide Bond Connectivities Prediction Using Phylogenetic Trees and a Simple Cysteine Mutation Model

    An Evolutionary View on Disulfide Bond Connectivities Prediction Using Phylogenetic Trees and a Simple Cysteine Mutation Model nork Daniele Raimondi, Gabriele Orlando, Wim Vranken

    Argitaratua 2015
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  2. 2
    ACPYPE - AnteChamber PYthon Parser interfacE

    ACPYPE - AnteChamber PYthon Parser interfacE nork Alan Sousa da Silva, Wim Vranken

    Argitaratua 2012
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  3. 3
    Computational resources for identifying and describing proteins driving liquid–liquid phase separation

    Computational resources for identifying and describing proteins driving liquid–liquid phase separation nork Rita Pancsa, Wim Vranken, Bálint Mészáros

    Argitaratua 2020
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  4. 4
    Computational approaches for inferring the functions of intrinsically disordered proteins

    Computational approaches for inferring the functions of intrinsically disordered proteins nork Mihály Váradi, Wim Vranken, Mainak Guharoy, Péter Tompa

    Argitaratua 2015
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  5. 5
    Deciphering the RRM-RNA recognition code: A computational analysis

    Deciphering the RRM-RNA recognition code: A computational analysis nork Joel Roca‐Martínez, Hrishikesh Dhondge, Michael Sattler, Wim Vranken

    Argitaratua 2023
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  6. 6
    The ACPYPE web server for small-molecule MD topology generation

    The ACPYPE web server for small-molecule MD topology generation nork Luciano Porto Kagami, Alan Wilter, Adrián Díaz, Wim Vranken

    Argitaratua 2023
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  7. 7
    From protein sequence to dynamics and disorder with DynaMine

    From protein sequence to dynamics and disorder with DynaMine nork Elisa Cilia, Rita Pancsa, Péter Tompa, Tom Lenaerts, Wim Vranken

    Argitaratua 2013
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  8. 8
    The DynaMine webserver: predicting protein dynamics from sequence

    The DynaMine webserver: predicting protein dynamics from sequence nork Elisa Cilia, Rita Pancsa, Péter Tompa, Tom Lenaerts, Wim Vranken

    Argitaratua 2014
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  9. 9
    Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins

    Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins nork Daniele Raimondi, Gabriele Orlando, Rita Pancsa, Taushif Khan, Wim Vranken

    Argitaratua 2017
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  10. 10
    Prediction of Disordered Regions in Proteins with Recurrent Neural Networks and Protein Dynamics

    Prediction of Disordered Regions in Proteins with Recurrent Neural Networks and Protein Dynamics nork Gabriele Orlando, Daniele Raimondi, Francesco Codicè, Francesco Tabaro, Wim Vranken

    Argitaratua 2022
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  11. 11
    AmyPro: a database of proteins with validated amyloidogenic regions

    AmyPro: a database of proteins with validated amyloidogenic regions nork Mihály Váradi, Greet De Baets, Wim Vranken, Péter Tompa, Rita Pancsa

    Argitaratua 2017
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  12. 12
    Accurate Random Coil Chemical Shifts from an Analysis of Loop Regions in Native States of Proteins

    Accurate Random Coil Chemical Shifts from an Analysis of Loop Regions in Native States of Proteins nork Alfonso De Simone, Andrea Cavalli, Shang‐Te Danny Hsu, Wim Vranken, Michele Vendruscolo

    Argitaratua 2009
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  13. 13
    Seeing the trees through the forest: sequence-based homo- and heteromeric protein-protein interaction sites prediction using random forest

    Seeing the trees through the forest: sequence-based homo- and heteromeric protein-protein interaction sites prediction using random forest nork Qingzhen Hou, Paul F G De Geest, Wim Vranken, Jaap Heringa, K. Anton Feenstra

    Argitaratua 2017
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  14. 14
    DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins

    DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins nork Daniele Raimondi, Ibrahim Tanyalçin, Julien Ferté, Andrea Gazzo, Gabriele Orlando, Tom Lenaerts, Marianne Rooman, Wim Vranken

    Argitaratua 2017
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  15. 15
    Deep mutational scanning of essential bacterial proteins can guide antibiotic development

    Deep mutational scanning of essential bacterial proteins can guide antibiotic development nork Liselot Dewachter, Aaron N. Brooks, Katherine Noon, Charlotte Cialek, Alia Clark-ElSayed, Thomas Schalck, Nandini Krishnamurthy, Wim Versées, Wim Vranken, Jan Michiels

    Argitaratua 2023
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  16. 16
    CING: an integrated residue-based structure validation program suite

    CING: an integrated residue-based structure validation program suite nork Jurgen F. Doreleijers, Alan Sousa da Silva, Elmar Krieger, Sander B. Nabuurs, Christian A.E.M. Spronk, Tim J. Stevens, Wim Vranken, Gert Vriend, Geerten W. Vuister

    Argitaratua 2012
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  17. 17
    Recommendations of the wwPDB NMR Validation Task Force

    Recommendations of the wwPDB NMR Validation Task Force nork G.T. Montelione, Michaël Nilges, Ad Bax, Peter Güntert, Torsten Herrmann, Jane S. Richardson, Charles D. Schwieters, Wim Vranken, Geerten W. Vuister, David S. Wishart, Helen M. Berman, Gerard J. Kleywegt, John L. Markley

    Argitaratua 2013
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  18. 18
    Small-Angle X-Ray Scattering- and Nuclear Magnetic Resonance-Derived Conformational Ensemble of the Highly Flexible Antitoxin PaaA2

    Small-Angle X-Ray Scattering- and Nuclear Magnetic Resonance-Derived Conformational Ensemble of the Highly Flexible Antitoxin PaaA2 nork Yann G.‐J. Sterckx, Alexander N. Volkov, Wim Vranken, Jaka Kragelj, Malene Ringkjøbing Jensen, L. Buts, Abel Garcia‐Pino, Thomas Jové, Laurence Van Melderen, Martin Blackledge, Nico A. J. van Nuland, Remy Loris

    Argitaratua 2014
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  19. 19
    MobiDB: intrinsically disordered proteins in 2021

    MobiDB: intrinsically disordered proteins in 2021 nork Damiano Piovesan, Marco Necci, Nahuel Escobedo, Alexander Miguel Monzón, András Hatos, Ivan Mičetić, Federica Quaglia, Lisanna Paladin, Pathmanaban Ramasamy, Zsuzsanna Dosztányi, Wim Vranken, Norman E. Davey, Gustavo Parisi, Mónika Fuxreiter, Silvio C. E. Tosatto

    Argitaratua 2020
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  20. 20
    RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank

    RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank nork Aart J. Nederveen, Jurgen F. Doreleijers, Wim Vranken, Zachary Miller, Chris A. E. M. Spronk, Sander B. Nabuurs, Peter Güntert, Miron Livny, John L. Markley, Michaël Nilges, Eldon L. Ulrich, Robert Kaptein, Alexandre M. J. J. Bonvin

    Argitaratua 2005
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