檢索結果 - Walzer, Mathias

ImmunoNodes – graphical development of complex immunoinformatics workflows 由 Schubert, Benjamin, de la Garza, Luis, Mohr, Christopher, Walzer, Mathias, Kohlbacher, Oliver

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FRED 2: an immunoinformatics framework for Python 由 Schubert, Benjamin, Walzer, Mathias, Brachvogel, Hans-Philipp, Szolek, András, Mohr, Christopher, Kohlbacher, Oliver

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ThermoRawFileParser: modular, scalable and cross-platform RAW file conversion 由 Hulstaert, Niels, Shofstahl, Jim, Sachsenberg, Timo, Walzer, Mathias, Barsnes, Harald, Martens, Lennart, Perez-Riverol, Yasset

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OpenPepXL: An Open-Source Tool for Sensitive Identification of Cross-Linked Peptides in XL-MS 由 Netz, Eugen, Dijkstra, Tjeerd M. H., Sachsenberg, Timo, Zimmermann, Lukas, Walzer, Mathias, Monecke, Thomas, Ficner, Ralf, Dybkov, Olexandr, Urlaub, Henning, Kohlbacher, Oliver

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Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry 由 Aiche, Stephan, Sachsenberg, Timo, Kenar, Erhan, Walzer, Mathias, Wiswedel, Bernd, Kristl, Theresa, Boyles, Matthew, Duschl, Albert, Huber, Christian G, Berthold, Michael R, Reinert, Knut, Kohlbacher, Oliver

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Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas 由 Walzer, Mathias, García-Seisdedos, David, Prakash, Ananth, Brack, Paul, Crowther, Peter, Graham, Robert L., George, Nancy, Mohammed, Suhaib, Moreno, Pablo, Papatheodorou, Irene, Hubbard, Simon J., Vizcaíno, Juan Antonio

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Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets 由 Griss, Johannes, Perez-Riverol, Yasset, Lewis, Steve, Tabb, David L., Dianes, José A., del-Toro, Noemi, Rurik, Marc, Walzer, Mathias W., Kohlbacher, Oliver, Hermjakob, Henning, Wang, Rui, Vizcaíno, Juan Antonio

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The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences 由 Perez-Riverol, Yasset, Bai, Jingwen, Bandla, Chakradhar, García-Seisdedos, David, Hewapathirana, Suresh, Kamatchinathan, Selvakumar, Kundu, Deepti J, Prakash, Ananth, Frericks-Zipper, Anika, Eisenacher, Martin, Walzer, Mathias, Wang, Shengbo, Brazma, Alvis, Vizcaíno, Juan Antonio

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The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics([Image: see text]) 由 Walzer, Mathias, Qi, Da, Mayer, Gerhard, Uszkoreit, Julian, Eisenacher, Martin, Sachsenberg, Timo, Gonzalez-Galarza, Faviel F., Fan, Jun, Bessant, Conrad, Deutsch, Eric W., Reisinger, Florian, Vizcaíno, Juan Antonio, Medina-Aunon, J. Alberto, Albar, Juan Pablo, Kohlbacher, Oliver, Jones, Andrew R.

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Proteomics Standards Initiative: Fifteen Years of Progress and Future Work 由 Deutsch, Eric W., Orchard, Sandra, Binz, Pierre-Alain, Bittremieux, Wout, Eisenacher, Martin, Hermjakob, Henning, Kawano, Shin, Lam, Henry, Mayer, Gerhard, Menschaert, Gerben, Perez-Riverol, Yasset, Salek, Reza M., Tabb, David L., Tenzer, Stefan, Vizcaíno, Juan Antonio, Walzer, Mathias, Jones, Andrew R.

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The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics 由 Vizcaíno, Juan Antonio, Mayer, Gerhard, Perkins, Simon, Barsnes, Harald, Vaudel, Marc, Perez-Riverol, Yasset, Ternent, Tobias, Uszkoreit, Julian, Eisenacher, Martin, Fischer, Lutz, Rappsilber, Juri, Netz, Eugen, Walzer, Mathias, Kohlbacher, Oliver, Leitner, Alexander, Chalkley, Robert J., Ghali, Fawaz, Martínez-Bartolomé, Salvador, Deutsch, Eric W., Jones, Andrew R.

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The PRIDE database and related tools and resources in 2019: improving support for quantification data 由 Perez-Riverol, Yasset, Csordas, Attila, Bai, Jingwen, Bernal-Llinares, Manuel, Hewapathirana, Suresh, Kundu, Deepti J, Inuganti, Avinash, Griss, Johannes, Mayer, Gerhard, Eisenacher, Martin, Pérez, Enrique, Uszkoreit, Julian, Pfeuffer, Julianus, Sachsenberg, Timo, Yılmaz, Şule, Tiwary, Shivani, Cox, Jürgen, Audain, Enrique, Walzer, Mathias, Jarnuczak, Andrew F, Ternent, Tobias, Brazma, Alvis, Vizcaíno, Juan Antonio

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The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience 由 Griss, Johannes, Jones, Andrew R., Sachsenberg, Timo, Walzer, Mathias, Gatto, Laurent, Hartler, Jürgen, Thallinger, Gerhard G., Salek, Reza M., Steinbeck, Christoph, Neuhauser, Nadin, Cox, Jürgen, Neumann, Steffen, Fan, Jun, Reisinger, Florian, Xu, Qing-Wei, del Toro, Noemi, Pérez-Riverol, Yasset, Ghali, Fawaz, Bandeira, Nuno, Xenarios, Ioannis, Kohlbacher, Oliver, Vizcaíno, Juan Antonio, Hermjakob, Henning

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A community proposal to integrate proteomics activities in ELIXIR 由 Vizcaíno, Juan Antonio, Walzer, Mathias, Jiménez, Rafael C., Bittremieux, Wout, Bouyssié, David, Carapito, Christine, Corrales, Fernando, Ferro, Myriam, Heck, Albert J.R., Horvatovich, Peter, Hubalek, Martin, Lane, Lydie, Laukens, Kris, Levander, Fredrik, Lisacek, Frederique, Novak, Petr, Palmblad, Magnus, Piovesan, Damiano, Pühler, Alfred, Schwämmle, Veit, Valkenborg, Dirk, van Rijswijk, Merlijn, Vondrasek, Jiri, Eisenacher, Martin, Martens, Lennart, Kohlbacher, Oliver

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qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments 由 Walzer, Mathias, Pernas, Lucia Espona, Nasso, Sara, Bittremieux, Wout, Nahnsen, Sven, Kelchtermans, Pieter, Pichler, Peter, van den Toorn, Henk W. P., Staes, An, Vandenbussche, Jonathan, Mazanek, Michael, Taus, Thomas, Scheltema, Richard A., Kelstrup, Christian D., Gatto, Laurent, van Breukelen, Bas, Aiche, Stephan, Valkenborg, Dirk, Laukens, Kris, Lilley, Kathryn S., Olsen, Jesper V., Heck, Albert J. R., Mechtler, Karl, Aebersold, Ruedi, Gevaert, Kris, Vizcaíno, Juan Antonio, Hermjakob, Henning, Kohlbacher, Oliver, Martens, Lennart

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Personalized peptide vaccine-induced immune response associated with long-term survival of a metastatic cholangiocarcinoma patient 由 Löffler, Markus W., Chandran, P. Anoop, Laske, Karoline, Schroeder, Christopher, Bonzheim, Irina, Walzer, Mathias, Hilke, Franz J., Trautwein, Nico, Kowalewski, Daniel J., Schuster, Heiko, Günder, Marc, Carcamo Yañez, Viviana A., Mohr, Christopher, Sturm, Marc, Nguyen, Huu-Phuc, Riess, Olaf, Bauer, Peter, Nahnsen, Sven, Nadalin, Silvio, Zieker, Derek, Glatzle, Jörg, Thiel, Karolin, Schneiderhan-Marra, Nicole, Clasen, Stephan, Bösmüller, Hans, Fend, Falko, Kohlbacher, Oliver, Gouttefangeas, Cécile, Stevanović, Stefan, Königsrainer, Alfred, Rammensee, Hans-Georg

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Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma 由 Löffler, Markus W., Mohr, Christopher, Bichmann, Leon, Freudenmann, Lena Katharina, Walzer, Mathias, Schroeder, Christopher M., Trautwein, Nico, Hilke, Franz J., Zinser, Raphael S., Mühlenbruch, Lena, Kowalewski, Daniel J., Schuster, Heiko, Sturm, Marc, Matthes, Jakob, Riess, Olaf, Czemmel, Stefan, Nahnsen, Sven, Königsrainer, Ingmar, Thiel, Karolin, Nadalin, Silvio, Beckert, Stefan, Bösmüller, Hans, Fend, Falko, Velic, Ana, Maček, Boris, Haen, Sebastian P., Buonaguro, Luigi, Kohlbacher, Oliver, Stevanović, Stefan, Königsrainer, Alfred, Rammensee, Hans-Georg

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Erratum to “Personalized peptide vaccine-induced immune response associated with long-term survival of a metastatic cholangiocarcinoma patient” 由 Löffler, Markus W., Chandran, P. Anoop, Laske, Karoline, Schroeder, Christopher, Bonzheim, Irina, Walzer, Mathias, Hilke, Franz J., Trautwein, Nico, Kowalewski, Daniel J., Schuster, Heiko, Günder, Marc, Carcamo Yañez, Viviana A., Mohr, Christopher, Sturm, Marc, Nguyen, Huu-Phuc, Riess, Olaf, Bauer, Peter, Nahnsen, Sven, Nadalin, Silvio, Zieker, Derek, Glatzle, Jörg, Thiel, Karolin, Schneiderhan-Marra, Nicole, Clasen, Stephan, Bösmüller, Hans, Fend, Falko, Kohlbacher, Oliver, Gouttefangeas, Cécile, Stevanović, Stefan, Königsrainer, Alfred, Rammensee, Hans-Georg

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Expanding the use of spectral libraries in proteomics 由 Deutsch, Eric W., Perez-Riverol, Yasset, Chalkley, Robert J., Wilhelm, Mathias, Tate, Stephen, Sachsenberg, Timo, Walzer, Mathias, Käll, Lukas, Delanghe, Bernard, Böcker, Sebastian, Schymanski, Emma L., Wilmes, Paul, Dorfer, Viktoria, Kuster, Bernhard, Volders, Pieter-Jan, Jehmlich, Nico, Vissers, Johannes P.C., Wolan, Dennis W., Wang, Ana Y., Mendoza, Luis, Shofstahl, Jim, Dowsey, Andrew W., Griss, Johannes, Salek, Reza M., Neumann, Steffen, Binz, Pierre-Alain, Lam, Henry, Vizcaíno, Juan Antonio, Bandeira, Nuno, Röst, Hannes

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Expression Atlas update: gene and protein expression in multiple species 由 Moreno, Pablo, Fexova, Silvie, George, Nancy, Manning, Jonathan R, Miao, Zhichiao, Mohammed, Suhaib, Muñoz-Pomer, Alfonso, Fullgrabe, Anja, Bi, Yalan, Bush, Natassja, Iqbal, Haider, Kumbham, Upendra, Solovyev, Andrey, Zhao, Lingyun, Prakash, Ananth, García-Seisdedos, David, Kundu, Deepti J, Wang, Shengbo, Walzer, Mathias, Clarke, Laura, Osumi-Sutherland, David, Tello-Ruiz, Marcela Karey, Kumari, Sunita, Ware, Doreen, Eliasova, Jana, Arends, Mark J, Nawijn, Martijn C, Meyer, Kerstin, Burdett, Tony, Marioni, John, Teichmann, Sarah, Vizcaíno, Juan Antonio, Brazma, Alvis, Papatheodorou, Irene

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