Bilaketaren emaitzak - Walenz, Brian

Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing nork Walenz, Brian, Florea, Liliana

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An algorithm for automated closure during assembly nork Koren, Sergey, Miller, Jason R, Walenz, Brian P, Sutton, Granger

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Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies nork Rhie, Arang, Walenz, Brian P., Koren, Sergey, Phillippy, Adam M.

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Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation nork Koren, Sergey, Walenz, Brian P., Berlin, Konstantin, Miller, Jason R., Bergman, Nicholas H., Phillippy, Adam M.

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Weighted minimizer sampling improves long read mapping nork Jain, Chirag, Rhie, Arang, Zhang, Haowen, Chu, Claudia, Walenz, Brian P, Koren, Sergey, Phillippy, Adam M

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Integrating Hi-C links with assembly graphs for chromosome-scale assembly nork Ghurye, Jay, Rhie, Arang, Walenz, Brian P., Schmitt, Anthony, Selvaraj, Siddarth, Pop, Mihai, Phillippy, Adam M., Koren, Sergey

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Aggressive assembly of pyrosequencing reads with mates nork Miller, Jason R., Delcher, Arthur L., Koren, Sergey, Venter, Eli, Walenz, Brian P., Brownley, Anushka, Johnson, Justin, Li, Kelvin, Mobarry, Clark, Sutton, Granger

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Nanoliter Reactors Improve Multiple Displacement Amplification of Genomes from Single Cells nork Marcy, Yann, Ishoey, Thomas, Lasken, Roger S, Stockwell, Timothy B, Walenz, Brian P, Halpern, Aaron L, Beeson, Karen Y, Goldberg, Susanne M. D, Quake, Stephen R

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Genetic Variation in an Individual Human Exome nork Ng, Pauline C., Levy, Samuel, Huang, Jiaqi, Stockwell, Timothy B., Walenz, Brian P., Li, Kelvin, Axelrod, Nelson, Busam, Dana A., Strausberg, Robert L., Venter, J. Craig

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HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads nork Nurk, Sergey, Walenz, Brian P., Rhie, Arang, Vollger, Mitchell R., Logsdon, Glennis A., Grothe, Robert, Miga, Karen H., Eichler, Evan E., Phillippy, Adam M., Koren, Sergey

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De novo assembly of haplotype-resolved genomes with trio binning nork Koren, Sergey, Rhie, Arang, Walenz, Brian P., Dilthey, Alexander T., Bickhart, Derek M., Kingan, Sarah B., Hiendleder, Stefan, Williams, John L., Smith, Timothy P. L., Phillippy, Adam M.

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Hybrid error correction and de novo assembly of single-molecule sequencing reads nork Koren, Sergey, Schatz, Michael C., Walenz, Brian P., Martin, Jeffrey, Howard, Jason, Ganapathy, Ganeshkumar, Wang, Zhong, Rasko, David A., McCombie, W. Richard, Jarvis, Erich D., Phillippy, Adam M.

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Gene and alternative splicing annotation with AIR nork Florea, Liliana, Di Francesco, Valentina, Miller, Jason, Turner, Russell, Yao, Alison, Harris, Michael, Walenz, Brian, Mobarry, Clark, Merkulov, Gennady V., Charlab, Rosane, Dew, Ian, Deng, Zuoming, Istrail, Sorin, Li, Peter, Sutton, Granger

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A Rickettsia Genome Overrun by Mobile Genetic Elements Provides Insight into the Acquisition of Genes Characteristic of an Obligate Intracellular Lifestyle nork Gillespie, Joseph J., Joardar, Vinita, Williams, Kelly P., Driscoll, Timothy, Hostetler, Jessica B., Nordberg, Eric, Shukla, Maulik, Walenz, Brian, Hill, Catherine A., Nene, Vishvanath M., Azad, Abdu F., Sobral, Bruno W., Caler, Elisabet

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The genomic structure of a human chromosome 22 nucleolar organizer region determined by TAR cloning nork Kim, Jung-Hyun, Noskov, Vladimir N., Ogurtsov, Aleksey Y., Nagaraja, Ramaiah, Petrov, Nikolai, Liskovykh, Mikhail, Walenz, Brian P., Lee, Hee-Sheung, Kouprina, Natalay, Phillippy, Adam M., Shabalina, Svetlana A., Schlessinger, David, Larionov, Vladimir

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An improved genome assembly uncovers prolific tandem repeats in Atlantic cod nork Tørresen, Ole K., Star, Bastiaan, Jentoft, Sissel, Reinar, William B., Grove, Harald, Miller, Jason R., Walenz, Brian P., Knight, James, Ekholm, Jenny M., Peluso, Paul, Edvardsen, Rolf B., Tooming-Klunderud, Ave, Skage, Morten, Lien, Sigbjørn, Jakobsen, Kjetill S., Nederbragt, Alexander J.

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Hybrid assembly with long and short reads improves discovery of gene family expansions nork Miller, Jason R., Zhou, Peng, Mudge, Joann, Gurtowski, James, Lee, Hayan, Ramaraj, Thiruvarangan, Walenz, Brian P., Liu, Junqi, Stupar, Robert M., Denny, Roxanne, Song, Li, Singh, Namrata, Maron, Lyza G., McCouch, Susan R., McCombie, W. Richard, Schatz, Michael C., Tiffin, Peter, Young, Nevin D., Silverstein, Kevin A. T.

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Effect of sequence depth and length in long-read assembly of the maize inbred NC358 nork Ou, Shujun, Liu, Jianing, Chougule, Kapeel M., Fungtammasan, Arkarachai, Seetharam, Arun S., Stein, Joshua C., Llaca, Victor, Manchanda, Nancy, Gilbert, Amanda M., Wei, Sharon, Chin, Chen-Shan, Hufnagel, David E., Pedersen, Sarah, Snodgrass, Samantha J., Fengler, Kevin, Woodhouse, Margaret, Walenz, Brian P., Koren, Sergey, Phillippy, Adam M., Hannigan, Brett T., Dawe, R. Kelly, Hirsch, Candice N., Hufford, Matthew B., Ware, Doreen

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Improved reference genome for the domestic horse increases assembly contiguity and composition nork Kalbfleisch, Theodore S., Rice, Edward S., DePriest, Michael S., Walenz, Brian P., Hestand, Matthew S., Vermeesch, Joris R., O′Connell, Brendan L., Fiddes, Ian T., Vershinina, Alisa O., Saremi, Nedda F., Petersen, Jessica L., Finno, Carrie J., Bellone, Rebecca R., McCue, Molly E., Brooks, Samantha A., Bailey, Ernest, Orlando, Ludovic, Green, Richard E., Miller, Donald C., Antczak, Douglas F., MacLeod, James N.

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Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition nork Kalbfleisch, Theodore S., Rice, Edward S., DePriest, Michael S., Walenz, Brian P., Hestand, Matthew S., Vermeesch, Joris R., O’Connell, Brendan L., Fiddes, Ian T., Vershinina, Alisa O., Saremi, Nedda F., Petersen, Jessica L., Finno, Carrie J., Bellone, Rebecca R., McCue, Molly E., Brooks, Samantha A., Bailey, Ernest, Orlando, Ludovic, Green, Richard E., Miller, Donald C., Antczak, Douglas F., MacLeod, James N.

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