Rezultati - Walenz, Brian

Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing od Walenz, Brian, Florea, Liliana

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An algorithm for automated closure during assembly od Koren, Sergey, Miller, Jason R, Walenz, Brian P, Sutton, Granger

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Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies od Rhie, Arang, Walenz, Brian P., Koren, Sergey, Phillippy, Adam M.

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Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation od Koren, Sergey, Walenz, Brian P., Berlin, Konstantin, Miller, Jason R., Bergman, Nicholas H., Phillippy, Adam M.

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Weighted minimizer sampling improves long read mapping od Jain, Chirag, Rhie, Arang, Zhang, Haowen, Chu, Claudia, Walenz, Brian P, Koren, Sergey, Phillippy, Adam M

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Integrating Hi-C links with assembly graphs for chromosome-scale assembly od Ghurye, Jay, Rhie, Arang, Walenz, Brian P., Schmitt, Anthony, Selvaraj, Siddarth, Pop, Mihai, Phillippy, Adam M., Koren, Sergey

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Aggressive assembly of pyrosequencing reads with mates od Miller, Jason R., Delcher, Arthur L., Koren, Sergey, Venter, Eli, Walenz, Brian P., Brownley, Anushka, Johnson, Justin, Li, Kelvin, Mobarry, Clark, Sutton, Granger

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Nanoliter Reactors Improve Multiple Displacement Amplification of Genomes from Single Cells od Marcy, Yann, Ishoey, Thomas, Lasken, Roger S, Stockwell, Timothy B, Walenz, Brian P, Halpern, Aaron L, Beeson, Karen Y, Goldberg, Susanne M. D, Quake, Stephen R

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Genetic Variation in an Individual Human Exome od Ng, Pauline C., Levy, Samuel, Huang, Jiaqi, Stockwell, Timothy B., Walenz, Brian P., Li, Kelvin, Axelrod, Nelson, Busam, Dana A., Strausberg, Robert L., Venter, J. Craig

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HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads od Nurk, Sergey, Walenz, Brian P., Rhie, Arang, Vollger, Mitchell R., Logsdon, Glennis A., Grothe, Robert, Miga, Karen H., Eichler, Evan E., Phillippy, Adam M., Koren, Sergey

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De novo assembly of haplotype-resolved genomes with trio binning od Koren, Sergey, Rhie, Arang, Walenz, Brian P., Dilthey, Alexander T., Bickhart, Derek M., Kingan, Sarah B., Hiendleder, Stefan, Williams, John L., Smith, Timothy P. L., Phillippy, Adam M.

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Hybrid error correction and de novo assembly of single-molecule sequencing reads od Koren, Sergey, Schatz, Michael C., Walenz, Brian P., Martin, Jeffrey, Howard, Jason, Ganapathy, Ganeshkumar, Wang, Zhong, Rasko, David A., McCombie, W. Richard, Jarvis, Erich D., Phillippy, Adam M.

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Gene and alternative splicing annotation with AIR od Florea, Liliana, Di Francesco, Valentina, Miller, Jason, Turner, Russell, Yao, Alison, Harris, Michael, Walenz, Brian, Mobarry, Clark, Merkulov, Gennady V., Charlab, Rosane, Dew, Ian, Deng, Zuoming, Istrail, Sorin, Li, Peter, Sutton, Granger

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A Rickettsia Genome Overrun by Mobile Genetic Elements Provides Insight into the Acquisition of Genes Characteristic of an Obligate Intracellular Lifestyle od Gillespie, Joseph J., Joardar, Vinita, Williams, Kelly P., Driscoll, Timothy, Hostetler, Jessica B., Nordberg, Eric, Shukla, Maulik, Walenz, Brian, Hill, Catherine A., Nene, Vishvanath M., Azad, Abdu F., Sobral, Bruno W., Caler, Elisabet

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The genomic structure of a human chromosome 22 nucleolar organizer region determined by TAR cloning od Kim, Jung-Hyun, Noskov, Vladimir N., Ogurtsov, Aleksey Y., Nagaraja, Ramaiah, Petrov, Nikolai, Liskovykh, Mikhail, Walenz, Brian P., Lee, Hee-Sheung, Kouprina, Natalay, Phillippy, Adam M., Shabalina, Svetlana A., Schlessinger, David, Larionov, Vladimir

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An improved genome assembly uncovers prolific tandem repeats in Atlantic cod od Tørresen, Ole K., Star, Bastiaan, Jentoft, Sissel, Reinar, William B., Grove, Harald, Miller, Jason R., Walenz, Brian P., Knight, James, Ekholm, Jenny M., Peluso, Paul, Edvardsen, Rolf B., Tooming-Klunderud, Ave, Skage, Morten, Lien, Sigbjørn, Jakobsen, Kjetill S., Nederbragt, Alexander J.

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Hybrid assembly with long and short reads improves discovery of gene family expansions od Miller, Jason R., Zhou, Peng, Mudge, Joann, Gurtowski, James, Lee, Hayan, Ramaraj, Thiruvarangan, Walenz, Brian P., Liu, Junqi, Stupar, Robert M., Denny, Roxanne, Song, Li, Singh, Namrata, Maron, Lyza G., McCouch, Susan R., McCombie, W. Richard, Schatz, Michael C., Tiffin, Peter, Young, Nevin D., Silverstein, Kevin A. T.

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Effect of sequence depth and length in long-read assembly of the maize inbred NC358 od Ou, Shujun, Liu, Jianing, Chougule, Kapeel M., Fungtammasan, Arkarachai, Seetharam, Arun S., Stein, Joshua C., Llaca, Victor, Manchanda, Nancy, Gilbert, Amanda M., Wei, Sharon, Chin, Chen-Shan, Hufnagel, David E., Pedersen, Sarah, Snodgrass, Samantha J., Fengler, Kevin, Woodhouse, Margaret, Walenz, Brian P., Koren, Sergey, Phillippy, Adam M., Hannigan, Brett T., Dawe, R. Kelly, Hirsch, Candice N., Hufford, Matthew B., Ware, Doreen

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Improved reference genome for the domestic horse increases assembly contiguity and composition od Kalbfleisch, Theodore S., Rice, Edward S., DePriest, Michael S., Walenz, Brian P., Hestand, Matthew S., Vermeesch, Joris R., O′Connell, Brendan L., Fiddes, Ian T., Vershinina, Alisa O., Saremi, Nedda F., Petersen, Jessica L., Finno, Carrie J., Bellone, Rebecca R., McCue, Molly E., Brooks, Samantha A., Bailey, Ernest, Orlando, Ludovic, Green, Richard E., Miller, Donald C., Antczak, Douglas F., MacLeod, James N.

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Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition od Kalbfleisch, Theodore S., Rice, Edward S., DePriest, Michael S., Walenz, Brian P., Hestand, Matthew S., Vermeesch, Joris R., O’Connell, Brendan L., Fiddes, Ian T., Vershinina, Alisa O., Saremi, Nedda F., Petersen, Jessica L., Finno, Carrie J., Bellone, Rebecca R., McCue, Molly E., Brooks, Samantha A., Bailey, Ernest, Orlando, Ludovic, Green, Richard E., Miller, Donald C., Antczak, Douglas F., MacLeod, James N.

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