Search Results - Vinod Kumar Yadav

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  1. 1
    An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples

    An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples by Vinod Kumar Yadav, Subhajyoti De

    Published 2014
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  2. 2
    The landscape of somatic mutations in protein coding genes in apparently benign human tissues carries signatures of relaxed purifying selection

    The landscape of somatic mutations in protein coding genes in apparently benign human tissues carries signatures of relaxed purifying selection by Vinod Kumar Yadav, James DeGregori, Subhajyoti De

    Published 2016
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  3. 3
    Genome-Wide Analyses of Recombination Prone Regions Predict Role of DNA Structural Motif in Recombination

    Genome-Wide Analyses of Recombination Prone Regions Predict Role of DNA Structural Motif in Recombination by Prithvi Mani, Vinod Kumar Yadav, Swapan K. Das, Shantanu Chowdhury

    Published 2009
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  4. 4
    Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells

    Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells by Anjali Verma, Vinod Kumar Yadav, Richa Basundra, Akinchan Kumar, Shantanu Chowdhury

    Published 2009
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  5. 5
    QuadBase: genome-wide database of G4 DNA occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes

    QuadBase: genome-wide database of G4 DNA occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes by Vinod Kumar Yadav, J.K. Abraham, Prita Mani, R. Kulshrestha, Shantanu Chowdhury

    Published 2007
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  6. 6
    Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide

    Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide by Pankaj Kumar, Vinod Kumar Yadav, Aradhita Baral, Parveen Kumar, Dhurjhoti Saha, Shantanu Chowdhury

    Published 2011
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  7. 7
    SomVarIUS: somatic variant identification from unpaired tissue samples

    SomVarIUS: somatic variant identification from unpaired tissue samples by Kyle Smith, Vinod Kumar Yadav, Shanshan Pei, Daniel A. Pollyea, Craig T. Jordan, Subhajyoti De

    Published 2015
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  8. 8
    Genome-wide study predicts promoter-G4 DNA motifs regulate selective functions in bacteria: radioresistance of D. radiodurans involves G4 DNA-mediated regulation

    Genome-wide study predicts promoter-G4 DNA motifs regulate selective functions in bacteria: radioresistance of D. radiodurans involves G4 DNA-mediated regulation by Nicolas Beaume, Rajiv Pathak, Vinod Kumar Yadav, Swathi Kota, Hari S. Misra, Hemant K. Gautam, Shantanu Chowdhury

    Published 2012
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  9. 9
    Quadruplex-single nucleotide polymorphisms (Quad-SNP) influence gene expression difference among individuals

    Quadruplex-single nucleotide polymorphisms (Quad-SNP) influence gene expression difference among individuals by Aradhita Baral, Pankaj Kumar, Rashi Halder, Prithvi Mani, Vinod Kumar Yadav, Ankita Singh, Swapan K. Das, Shantanu Chowdhury

    Published 2012
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  10. 10
    Expression Profiling of Macrophages Reveals Multiple Populations with Distinct Biological Roles in an Immunocompetent Orthotopic Model of Lung Cancer

    Expression Profiling of Macrophages Reveals Multiple Populations with Distinct Biological Roles in an Immunocompetent Orthotopic Model of Lung Cancer by Joanna M. Poczobutt, Subhajyoti De, Vinod Kumar Yadav, Teresa T. Nguyen, Howard Li, Trisha R. Sippel, Mary C. Weiser-Evans, Raphael A. Nemenoff

    Published 2016
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  11. 11
    The Tandem Duplicator Phenotype Is a Prevalent Genome-Wide Cancer Configuration Driven by Distinct Gene Mutations

    The Tandem Duplicator Phenotype Is a Prevalent Genome-Wide Cancer Configuration Driven by Distinct Gene Mutations by Francesca Menghi, Floris P Barthel, Vinod Kumar Yadav, Ming Tang, Bo Ji, Zhonghui Tang, Gregory W. Carter, Yijun Ruan, Ralph Scully, Roel G.W. Verhaak, Jos Jonkers, Edison T. Liu

    Published 2018
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  12. 12
    DNA damage-induced ephrin-B2 reverse signaling promotes chemoresistance and drives EMT in colorectal carcinoma harboring mutant p53

    DNA damage-induced ephrin-B2 reverse signaling promotes chemoresistance and drives EMT in colorectal carcinoma harboring mutant p53 by Sk. Kayum Alam, Vinod Kumar Yadav, Swati Bajaj, Arindam Datta, Shamit K. Dutta, Madhumita Bhattacharyya, Sayantani Sarkar Bhattacharya, Subrata Debnath, Siddhartha Roy, Lisa A. Boardman, Thomas C. Smyrk, Jennifer R. Molina, Susmita Chakrabarti, Shantanu Chowdhury, Debaditya Mukhopadhyay, Susanta Roychoudhury

    Published 2015
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  13. 13
    Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines

    Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines by Xing Yi Woo, Anuj Srivastava, Joel H. Graber, Vinod Kumar Yadav, Vishal Sarsani, Al Simons, Glen Beane, Stephen C. Grubb, Guruprasad Ananda, Rangjiao Liu, Grace A. Stafford, Jeffrey H. Chuang, Susan Airhart, R. Krishna Murthy Karuturi, Joshy George, Carol J. Bult

    Published 2019
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  14. 14
    The tandem duplicator phenotype as a distinct genomic configuration in cancer

    The tandem duplicator phenotype as a distinct genomic configuration in cancer by Francesca Menghi, Koichiro Inaki, Xingyi Woo, Pooja Kumar, Krzysztof R. Grzȩda, Ankit Malhotra, Vinod Kumar Yadav, Hyunsoo Kim, Eladio J. Márquez, Duygu Ucar, Phung Trang Shreckengast, Joel P. Wagner, G. Macintyre, Krishna R. Murthy Karuturi, Ralph Scully, James Keck, Jeffrey H. Chuang, Edison T. Liu

    Published 2016
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  15. 15
    Non-metastatic 2 (NME2)-mediated suppression of lung cancer metastasis involves transcriptional regulation of key cell adhesion factor vinculin

    Non-metastatic 2 (NME2)-mediated suppression of lung cancer metastasis involves transcriptional regulation of key cell adhesion factor vinculin by Ram Krishna Thakur, Vinod Kumar Yadav, Akinchan Kumar, Ankita Singh, Krishnendu Pal, Luke H. Hoeppner, Dhurjhoti Saha, Gunjan Purohit, Richa Basundra, Anirban Kar, Rashi Halder, Pankaj Kumar, Aradhita Baral, MJ Mahesh Kumar, Alfonso Baldi, Bruno Vincenzi, Laura Lorenzon, Rintu Banerjee‬‬‬‬‬‬‬‬‬, Praveen Kumar, Viji Shridhar, Debabrata Mukhopadhyay, Shantanu Chowdhury

    Published 2014
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